KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:52 2014 Check: 00 .. Name: ENSBTAP00000002437/1-311 Len: 327 Check: 9583 Weight: 1.00 Name: ENSP00000454062/1-237 Len: 327 Check: 424 Weight: 1.00 Name: ENSTTRP00000008167/1-236 Len: 327 Check: 9814 Weight: 1.00 Name: bmy_16980T0/1-277 Len: 327 Check: 1016 Weight: 1.00 Name: BACU008665/1-277 Len: 327 Check: 1114 Weight: 1.00 // 1 50 ENSBTAP00000002437/1-311 HPSESSPRMA LPPSPLAMEY VNDFDLMKFE VKREPSEGRS GPPTASLGST ENSP00000454062/1-237 --------MA LPPSPLAMEY VNDFDLMKFE VKREPSEGRP GPPTASLGST ENSTTRP00000008167/1-236 --------MA LPPSPLAMEY VNDFDLMKFE VKREPLEGRS GPPTASLGST bmy_16980T0/1-277 --------MA LPPSPLAMEY VNDFDLMKFE VKREPLEGRS GPPTASLGST BACU008665/1-277 --------MA LPPSPLAMEY VNDFDLMKFE VKREPLEGRS GPPTASLGST 51 100 ENSBTAP00000002437/1-311 PYSSVPPSPT FSEPGMVGAT EGTRPGLEEL YWLATLQQQL GAGEVLGLSP ENSP00000454062/1-237 PYSSVPPSPT FSEPGMVGAT EGTRPGLEEL YWLATLQQQL GAGEALGLSP ENSTTRP00000008167/1-236 PYSSVPPSPT FSEPGTVGAT EGTRPGLEEL YWLATLQQQL GAGEVLGLSP bmy_16980T0/1-277 PYSSVPPSPT FSEPGTVGAT EGTRPGLEEL YWLATLQQQL GAGEVLGLSP BACU008665/1-277 PYSSVPPSPT FSEPGTVGAT EGTRPGLEEL YWLATLQQQL GAGEVLGLSP 101 150 ENSBTAP00000002437/1-311 EEAVELLQGQ SPVPVEGSHA YYPGSPEETG AQHAQGQGER GGQPREEDSV ENSP00000454062/1-237 EEAMELLQGQ GPVPVDGPHG YYPGSPEETG AQHVQ----- ---------- ENSTTRP00000008167/1-236 EEAVELLQGQ GPVPVEGPHT YYPGSPEETG AQHAQ----- ---------- bmy_16980T0/1-277 EEAVELLQGQ GPVPVEGTHP YYPGSPEETG AQHAQREMSS LNQEEEGE-- BACU008665/1-277 EEAVELLQGQ GPVPVEGSHP YYPGSPEETG AQHAQREMSS LNQEEEGE-- 151 200 ENSBTAP00000002437/1-311 LPRHPTFSGR IGTHPINHRQ MGALRALRYN PNPLRVTGLR SELAERFSDA ENSP00000454062/1-237 ---------- ---------- ---------- ---------- --LAERFSDA ENSTTRP00000008167/1-236 ---------- ---------- ---------- ---------- --LAERFSDA bmy_16980T0/1-277 ---------- ---------- ---------- ---------- DKLAERFSDA BACU008665/1-277 ---------- ---------- ---------- ---------- DKLAERFSDA 201 250 ENSBTAP00000002437/1-311 ALVSMSVREL NRQLRGCGRD EALRLKQRRR TLKNRGYAQA CRSKRLQQRR ENSP00000454062/1-237 ALVSMSVREL NRQLRGCGRD EALRLKQRRR TLKNRGYAQA CRSKRLQQRR ENSTTRP00000008167/1-236 ALVSMSVREL NRQLRGCGRD EALRLKQRRR TLKNRGYAQA CRSKRLQQRR bmy_16980T0/1-277 ALVSMSVREL NRQLRGCGRD EALRLKQRRR TLKNRGYAQA CRSKRLQQRR BACU008665/1-277 ELVSMSVREL NRQLRGCGRD EALRLKQRRR TLKNRGYAQA CRSKRLQQRR 251 300 ENSBTAP00000002437/1-311 GLEAERARLA TQLDALRAEV ARLARERDLY KARCELLAPS GLGPEATPTS ENSP00000454062/1-237 GLEAERARLA AQLDALRAEV ARLARERDLY KARCDRLTSS GPGSGDPSH- ENSTTRP00000008167/1-236 GLEAERARLA AQLDALRAEV ARLARERDLY KARCDRLAPS GPGGGHAP-- bmy_16980T0/1-277 GLEAERARLA AQLDALRAEV TRLARERDLY KARCDRLAPS GPGPEATPTS BACU008665/1-277 GLEAERARLA AQLDALRAEV TRLARERDLY KARCDRLAPS GPGPEATPTS 301 350 ENSBTAP00000002437/1-311 SSEPLATEWW S--------- ------- ENSP00000454062/1-237 ---------- ---------- ----LFL ENSTTRP00000008167/1-236 ---------- ---------- ----FFL bmy_16980T0/1-277 SSEPLAAEWW SRWAGGAHHP GGGCTIH BACU008665/1-277 SSEPLAAEWW SRWAGGAHHP GGGCTIH