KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:56 2014 Check: 00 .. Name: ENSP00000359668/1-258 Len: 320 Check: 8545 Weight: 1.00 Name: ENSBTAP00000002447/1-245 Len: 320 Check: 8668 Weight: 1.00 Name: bmy_09194T0/1-291 Len: 320 Check: 9153 Weight: 1.00 Name: ENSTTRP00000002131/1-183 Len: 320 Check: 9133 Weight: 1.00 Name: BACU018606/1-165 Len: 320 Check: 9886 Weight: 1.00 // 1 50 ENSP00000359668/1-258 MEEMKKTAIR LPKGKQKPIK TEWNSRCVLF TYFQGDISSV VDEHFSRALS ENSBTAP00000002447/1-245 MEDVTKTTVH T----QSPIK TEWNSRCVLF TYFQGDISSV VDEHFSRALG bmy_09194T0/1-291 MEEVRKTAVQ M----QSPIK TEWNSRCVLF TYFQGDISSV VDEHFSRALG ENSTTRP00000002131/1-183 ---------- ---------- ---------- ---------- ---------- BACU018606/1-165 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000359668/1-258 NIKSPQELTP SSQSEGVMLK ND-------- ---------- ---------- ENSBTAP00000002447/1-245 NVKSPQGQNP SSPSGDVLLR ND-------- ---------- ---------- bmy_09194T0/1-291 NVKSPQGLSP SSQSGDVILR NDSYVKRRRT HARNALLPLE DGPASKWDLC ENSTTRP00000002131/1-183 ---------- ---------- ---------- ---------- ---------- BACU018606/1-165 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000359668/1-258 ---------- ---------- ---------- DSMSPNQWRY SSPWTKPQPE ENSBTAP00000002447/1-245 ---------- ---------- ---------- SDMPPNQWRF SAPWTKPQPE bmy_09194T0/1-291 FQTPTPWLAR LFRSGQGLGK GTWITSKRLD SDMPPNQWRF SSQWTKPQPE ENSTTRP00000002131/1-183 ---------- ---------- ---------- SGMPPNQWRF SSQWTKPQPE BACU018606/1-165 ---------- ---------- ---------- SDMPPNQWRF SSQWTKPQPE 151 200 ENSP00000359668/1-258 VPVTNRAANC NLHVPGPMAV NQFSPSLARR ASVRPGELWH FSSLAGTSSL ENSBTAP00000002447/1-245 VSFANGAASC SLNGSGLMPM DQYPLSLTGG PSVQPGELWH FSSLASPSFP bmy_09194T0/1-291 VSFANGAASC SLSGSGPVAM DQYPVSLTGS PSIQPGELRH FSSLASSSFP ENSTTRP00000002131/1-183 VSFANGAASC SLSGSGPMAV DQYPVSLTGS PSIQPGEPRH FSSLASSSFP BACU018606/1-165 VSFANGAASC SLSGSGPMAM DQYPVSLTGS PSIQPGELRH FSSPASSSFP 201 250 ENSP00000359668/1-258 EPGYSHPFPA RHLVPEPQPD GKREPLLSLL QQDRCLARPQ ESAARENGNP ENSBTAP00000002447/1-245 EPGYPHAFST GHLVPEPQPE GKYEPLLSLL QPERCLTHPQ ESASWEDGNS bmy_09194T0/1-291 EPGYPHAFST GHLVPEPQPD GKYEPLLSLL QPERCLTHPQ ESASWEDGYS ENSTTRP00000002131/1-183 ELGYPHAFST GHSVPETQPD GKYEPLLSLL QPERCLTHPQ ESASWEDGNS BACU018606/1-165 EPGYPHAFST GHLVPEPQPD GKYEPLLSLL QPERCLTRPQ ESASWEDGYS 251 300 ENSP00000359668/1-258 GQIAGSTGLL FNLPPGSVHY KKLYVSR--- -GSASTSLPN ETLSELETPG ENSBTAP00000002447/1-245 A---GSTGLL FNLPPSSAHC KEM--PPSTF LGAESPSLAF CTLDEFSF-- bmy_09194T0/1-291 AQTSGSMGLL FNLPSGSAHC KEM--PPNTW -RIASDRLWL RAASIVTV-- ENSTTRP00000002131/1-183 AQTAGSMGLL FNLPSGSAHS KKIYFPPDG- -GPASSSLAV ETLPLLVTSG BACU018606/1-165 AQTSGSMGLL FNLPSGSAHF KKIYFPPDG- -GPASASLAV ESKYLLL--- 301 350 ENSP00000359668/1-258 KYSLTPPNHW GHPHRYLQHL ENSBTAP00000002447/1-245 ----TAP--W SVPERNCQKL bmy_09194T0/1-291 ---------- ---------- ENSTTRP00000002131/1-183 K--LPAQNRW GHQCGCP--- BACU018606/1-165 ---------- ----------