KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:00 2014 Check: 00 .. Name: bmy_10955T0/1-654 Len: 740 Check: 3529 Weight: 1.00 Name: ENSP00000451211/1-667 Len: 740 Check: 247 Weight: 1.00 Name: ENSTTRP00000008879/1-653 Len: 740 Check: 2510 Weight: 1.00 Name: BACU000949/1-375 Len: 740 Check: 5581 Weight: 1.00 Name: ENSBTAP00000002464/1-659 Len: 740 Check: 7865 Weight: 1.00 // 1 50 bmy_10955T0/1-654 ---------- ---------- --------MN LVDFLKAFL- ---------- ENSP00000451211/1-667 MHFTGAVMQE NLRFASSGDD IKIWDASSMT LVDKFNPHTS PHGISSICWS ENSTTRP00000008879/1-653 -------MQE NLRFASSGDD VKIWDASSMT LVDKFNPHTS PHGISSVCWS BACU000949/1-375 -------MQE NLRFASSGDD VKIWDASSMT LVDKFNPHTS PHGISSVCWS ENSBTAP00000002464/1-659 -------MQE NLRFASSGDD VKIWDASSMT LVDKFNPHTA PHAISSVCWS 51 100 bmy_10955T0/1-654 ---NTLQTIE SMGQIMRAKA DMCQ------ ---------- ---------- ENSP00000451211/1-667 SNNNFLVTAS SSGDKIVVSS CKCKPVPLLE LAEGQKQTCV NLNSTSMYLV ENSTTRP00000008879/1-653 SNNNFLVTAS SSGDKIVVSS CKCKPVPLLE LGEGQKQTCV SLNSTSMYLV BACU000949/1-375 SNNNFLVTAS SSGDKIVVSS CKCKPVPLLE LGEGQKQTCV SLNSTSMYLV ENSBTAP00000002464/1-659 SNNNFLVTAS SSGDKIVVSS CKCKPVPLLE LGEGQKQTCV SLNSTSMYLV 101 150 bmy_10955T0/1-654 ---FKFNINV FG-----CLT IIMDHKDEVT CVTYNWNDCY IASGSLSGEI ENSP00000451211/1-667 SGGLNNTVNI WDLKSKRVHR SLKDHKDQVT CVTYNWNDCY IASGSLSGEI ENSTTRP00000008879/1-653 SGGLNNTVNI WDLKSKRVHR SLKDHKDEVT CVTYNWNDCY IASGSLSGEI BACU000949/1-375 SGGLNNTVNI WDLKSKRVHR SLKDHKDEVT CVTYNWNDCY IASGSLSGEI ENSBTAP00000002464/1-659 SGGLNNTVNI WDLKSKRVHR SLKDHKDEVT CVTYNWNDCY IASGSLSGEI 151 200 bmy_10955T0/1-654 ILHSVTTNLS STPFGHGSNQ VTGIAFVSIN KPYEYGDLSV RHLKYSLFKK ENSP00000451211/1-667 ILHSVTTNLS STPFGHGSNQ ---------- --------SV RHLKYSLFKK ENSTTRP00000008879/1-653 ILHSVTTNLS STPFGHGSNQ ---------- --------SV RHLKYSLFKK BACU000949/1-375 ILHSVTTNLS STPFGHGSNQ ---------- --------SV RHLKYSLFKK ENSBTAP00000002464/1-659 ILHSVTTNLS STPFGHGSNQ ---------- --------SI RHLKYSLFKK 201 250 bmy_10955T0/1-654 SLLGSVSDNG IVTLWDVNSQ SPYHSFDGTH KAPGSGICFS PVNELLFVTI ENSP00000451211/1-667 SLLGSVSDNG IVTLWDVNSQ SPYHNFDSVH KAPASGICFS PVNELLFVTI ENSTTRP00000008879/1-653 SLLGSVSDNG IVTLWDVNSQ SPYHNFDSTH KAPGSGICFS PVNELLFVTI BACU000949/1-375 SLLGSVSDNG IVTLWDVNSQ SPYHNFDGTH KAPGSGICFS PVNELLFVTI ENSBTAP00000002464/1-659 SLLGSVSDNG IVTLWDVNSQ SPYHNFDSTH KAPASGICFS PVNELLFVTV 251 300 bmy_10955T0/1-654 GLDKRIILYD TSSKKLVKTL VADAPLTAVD FMPDGATLAI GSSRGKIYQY ENSP00000451211/1-667 GLDKRIILYD TSSKKLVKTL VADTPLTAVD FMPDGATLAI GSSRGKIYQY ENSTTRP00000008879/1-653 GLDKRIILYD TSSKXXXXXX XXXXXXTAVD FMPDGAL--- -AASWKIYQY BACU000949/1-375 GLDKRIILYD TSSKKLVKTL VADAPLTAVD FMPDGAALAI GSSRGKVYQY ENSBTAP00000002464/1-659 GLDKRIILYD TSSKKLVKTL VADAPLTAVD FMPDGATLAI GSSRGKIYQY 301 350 bmy_10955T0/1-654 DLRMLKSPVK TISAHKTSVQ CVAFQYSTVL SKSGLNKGCS NKPTAVNKRT ENSP00000451211/1-667 DLRMLKSPVK TISAHKTSVQ CIAFQYSTVL TKSSLNKGCS NKPTTVNKRS ENSTTRP00000008879/1-653 DLRMLKSQ-K TISAH-TSVQ CIAFQYSTVL SKSGLNKGCS NKPTAVNKRT BACU000949/1-375 DLRMLKSPVK TISAHKTSVQ CIAFQYSTVL SKSGLNKGCS NKPTAVNKRT ENSBTAP00000002464/1-659 DLRMLKSPIK TISAHKTSVQ CIAFQYSTVL SKSGLNKGCS NKPTAVNKRT 351 400 bmy_10955T0/1-654 VNVSAASGGV QNSGVVREAA TTSIATVLPQ PTTAVVGKGT VAVQDKAGLP ENSP00000451211/1-667 VNVNAASGGV QNSGIVREAP ATSIATVLPQ PMTSAMGKGT VAVQEKAGLP ENSTTRP00000008879/1-653 VNVSTASGGV QNSGVVREAA TTSIATVLPQ ATTAVVGKGT VALHDKAGLP BACU000949/1-375 VNVSAASGGA QNSGVVREAA TTSIATVLPQ PTTAVVGKGT VAVQDKAG-- ENSBTAP00000002464/1-659 ANVSAGGGGA QNPGVVREAA TTSIATVPPQ PTAAAVGKGA VAPQDKAGLP 401 450 bmy_10955T0/1-654 RSINTDILSK ETESGKTQDF SSFDDTGKSS LGDMFSPIRD DAVVNKGS-- ENSP00000451211/1-667 RSINTDTLSK ETDSGKNQDF SSFDDTGKSS LGDMFSPIRD DAVVNKGSDE ENSTTRP00000008879/1-653 RSINTDILSK ETESGKTQDF SSFDDTGKSS LGDMFSPIRD DAVVNKGSDE BACU000949/1-375 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002464/1-659 RSINTDTLSK EAESGKNQDF SNFDDSGKSS LGDMFSPVRD DAVVSKGGDE 451 500 bmy_10955T0/1-654 -------LDY LPQLNSVFPP RKNPVASGTP VLHSSPLNVF TGSPGKEENE ENSP00000451211/1-667 SIGKGDGFDF LPQLNSVFPP RKNPVTSSTS VLHSSPLNVF MGSPGKEENE ENSTTRP00000008879/1-653 SVGKGDGLDF LPQLNSVFPP RKNPVASSTS VLHSSPLNVF MGSPGKEENE BACU000949/1-375 ---------- ---------- ---------- -------NI- ---------- ENSBTAP00000002464/1-659 SIGKGDGLDF LPQLNSVFPP RKNPVVSSTS VLHSSPLNVF MGSPGKEENE 501 550 bmy_10955T0/1-654 NRDLTAESKK MYLGKQEPKD SFKQFAKLI- SGAETGNLNT SPSSNQTRSP ENSP00000451211/1-667 NRDLTAESKK IYMGKQESKD SFKQLAKLVT SGAESGNLNT SPSSNQTRNS ENSTTRP00000008879/1-653 NHDLTAESKK MYLGKQEPKD SFKQFAKLI- SGAETGNLNT SPSSNQTRSP BACU000949/1-375 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002464/1-659 NHDLTAESKK MYLGKQESKD SFKQFAKLI- SGAETGNLNA SPSSNQTRSP 551 600 bmy_10955T0/1-654 EKFEKPEKET EAQFIYEPPV NGSSTPNPKI ASSVTAGVAS SLSEKIADTI ENSP00000451211/1-667 EKFEKPENEI EAQLICEPPI NGSSTPNPKI ASSVTAGVAS SLSEKIADSI ENSTTRP00000008879/1-653 EKFEKPEKEI EGQFIYELPV NGSSTPNPKI ASSVTAGVAS SLSEKIADTI BACU000949/1-375 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002464/1-659 EKFEKPEKEI EAQLINEPPG NGSSTPNPKI ASSVTAGVAG SLSEKIVDTI 601 650 bmy_10955T0/1-654 GNNRPNAPLT SVQIHFIQNM IQETLDDFRM RQNLLSTLAQ IWNTMSKNVG ENSP00000451211/1-667 GNNRQNAPLT SIQIRFIQNM IQETLDDFR- ---------- ---------- ENSTTRP00000008879/1-653 GNNRPNAPLT SVQIRFIQNM IQETLDDFR- ---------- ---------- BACU000949/1-375 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002464/1-659 GNSRPNAPLS SVQIRFIQNM IQETLDDFR- ---------- ---------- 651 700 bmy_10955T0/1-654 EDVQFLEACH RDIVNLQVEM IKQFHMQLNE MHSLEACHRD IVNLQVEMIK ENSP00000451211/1-667 ---------- ---------- ---------- ----EACHRD IVNLQVEMIK ENSTTRP00000008879/1-653 ---------- ---------- ---------- ----EACHKD IVNLQVEMIK BACU000949/1-375 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002464/1-659 ---------- ---------- ---------- ----EACHRD IVNLQVEMIK 701 750 bmy_10955T0/1-654 QFHMQLNEMH SLLERYSVNE GLVAEIERLR EENKRLRAHF ENSP00000451211/1-667 QFHMQLNEMH SLLERYSVNE GLVAEIERLR EENKRLRAHF ENSTTRP00000008879/1-653 QFHMQLNEMH SLLERYSVNE GLVAEIERLR EENKRLRAHF BACU000949/1-375 ---------- ---------- ---------- ---------- ENSBTAP00000002464/1-659 QFHMQLNEMH SLLERYSVNE GLVAEIERLR EENKRLRAHF