KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:01 2014 Check: 00 .. Name: ENSTTRP00000005694/1-1198 Len: 1204 Check: 7721 Weight: 1.00 Name: ENSP00000331727/1-1196 Len: 1204 Check: 7799 Weight: 1.00 Name: ENSBTAP00000002469/1-1095 Len: 1204 Check: 4552 Weight: 1.00 Name: bmy_06224T0/1-973 Len: 1204 Check: 1503 Weight: 1.00 Name: BACU019098/1-1096 Len: 1204 Check: 6173 Weight: 1.00 // 1 50 ENSTTRP00000005694/1-1198 MPVRRGHVAP QNTFLGTIIR KFEGQNKKFI IANARVQNCA IIYCNDGFCE ENSP00000331727/1-1196 MPVRRGHVAP QNTFLGTIIR KFEGQNKKFI IANARVQNCA IIYCNDGFCE ENSBTAP00000002469/1-1095 ---------- ---------- ---------- ---------- ---------- bmy_06224T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU019098/1-1096 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000005694/1-1198 MTGFSRPDVM QKPCTCDFLH GPETKRHDIA QIAQALLGSE ERKVEVTYYH ENSP00000331727/1-1196 MTGFSRPDVM QKPCTCDFLH GPETKRHDIA QIAQALLGSE ERKVEVTYYH ENSBTAP00000002469/1-1095 ---------- ---------- ---------- ---------- ---------- bmy_06224T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU019098/1-1096 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000005694/1-1198 KNGSTFICNT HIIPVKNQEG VAMMFIINFE YVTDEENSAS PERLNTILPV ENSP00000331727/1-1196 KNGSTFICNT HIIPVKNQEG VAMMFIINFE YVTDNENAAT PERVNPILPI ENSBTAP00000002469/1-1095 --GSTFICNT HIIPVKNQEG VAMMFIINFE YVRNEENAAS PERVNPILPV bmy_06224T0/1-973 MVGSTFICNT HIIPVKNQEG VAMMFIINFE YVTDEENSAS PERLNTILPV BACU019098/1-1096 --GSTFICNT HIIPVKNQEG VAMMFIINFE YVTDEENSAS PERLNTILPV 151 200 ENSTTRP00000005694/1-1198 KTVNXXXXXX XXXXXXXXX- XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000331727/1-1196 KTVNRKFFGF KFPGLRVLT- YRKQSLPQED PDVVVIDSSK HSDDSVAMKH ENSBTAP00000002469/1-1095 KTVNRKLFGF KFPGLRVLT- YRKQSLPQED PDVVVIESSK HSDDSVAMKH bmy_06224T0/1-973 KTVNRKLFGF KFPGLRVLT- YRKQSLPQED PDVVVIDSSK HSDDSVAMKH BACU019098/1-1096 KTVNRGEMN- KISGLIGFRG WRKQSLPQED PDVVVIDSSK HSDDSVAMKH 201 250 ENSTTRP00000005694/1-1198 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000331727/1-1196 FKSPTKESCS PSEADDTKAL IQPSKCSPLV NISGPLDHSS PKRQWDRLYP ENSBTAP00000002469/1-1095 LKSPTKESCS PSEADDTKAL IQPSKCSPLV NISGPLDHSS PKRQWDRLYP bmy_06224T0/1-973 FKSPTKESCS PSEADDTKAL IQPSKCSPLV NISGPLDHSS PKRQWDRLYP BACU019098/1-1096 FKSPTKESCS PSEADDTKAL IQPSKCSPLV NISGPLDHSS PKRQWDRLYP 251 300 ENSTTRP00000005694/1-1198 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX EGFSVHPKNI FRDRHASEDN ENSP00000331727/1-1196 DMLQSSSQLS HSRSRESLCS IRRASSVHDI EGFGVHPKNI FRDRHASEDN ENSBTAP00000002469/1-1095 DMLQSSSQLT HSRSKESICS IRRASSVHDI EGFSVHPKNI FRDRHASEDN bmy_06224T0/1-973 DMLQSSSQLT HSRSKESICS IRRASSVQDI EGFSVHPKNI FRDRHASE-- BACU019098/1-1096 DMLQSSSQLT HSRSKESICS IRRASSVQDI EGFSVHPKNI FRDRHASEDN 301 350 ENSTTRP00000005694/1-1198 GRNVKGPFNH IKSSLLGSTS DSNLNKYSTI NKIPQLTLNF SDVKTEKKNT ENSP00000331727/1-1196 GRNVKGPFNH IKSSLLGSTS DSNLNKYSTI NKIPQLTLNF SEVKTEKKNS ENSBTAP00000002469/1-1095 GRNVKGPFNH IKSSLLGSTS DSNLNKYSTI NKIPQLTLNF SDVKAEKKNA bmy_06224T0/1-973 -----GPFNH IKSSLLGSTS DSNLNKYSTI NKIPQLTLNF SDVKTEKKNT BACU019098/1-1096 GRNVKGPFNH IKSSLLGSTS DSNLNKYSTI NKIPQLTLNF SDVKTEKKNT 351 400 ENSTTRP00000005694/1-1198 SPPSSDKTII APKVKDRTHN VTEKVTQVLS LGADVLPEYK LQTPRINKFT ENSP00000331727/1-1196 SPPSSDKTII APKVKDRTHN VTEKVTQVLS LGADVLPEYK LQTPRINKFT ENSBTAP00000002469/1-1095 SPPSSDKTII APKVKDRTHN VTEKVTQVLS LGADVLPEYK LQTPRINKFT bmy_06224T0/1-973 SPPSSDKTII APKVKDRTHN VTEKVTQVLS LGADVLPEYK LQTPRINKFT BACU019098/1-1096 SPPSSDKTII APKVKDRTHN VTEKVTQVLS LGADVLPEYK LQTPRINKFT 401 450 ENSTTRP00000005694/1-1198 ILHYSPFKAV WDWLILLLVI YTAIFTPYSA AFLLNDREEQ KRRECGYSCS ENSP00000331727/1-1196 ILHYSPFKAV WDWLILLLVI YTAIFTPYSA AFLLNDREEQ KRRECGYSCS ENSBTAP00000002469/1-1095 ILHYSPFKAV WDWLILLLVI YTAIFTPYSA AFLLNDREEQ KRRECGYSCS bmy_06224T0/1-973 ILHYSPFKAV WDWLILLLVI YTAIFTPYSA AFLLNDREEQ KRRECGYSCS BACU019098/1-1096 ILHYSPFKAV WDWLILLLVI YTAIFTPYSA AFLLNDREEQ KRRECGYSCS 451 500 ENSTTRP00000005694/1-1198 PLNVVDLIVD IMFIIDILIN FRTTYVNQNE EVVSDPAKIA IHYFKGWFLI ENSP00000331727/1-1196 PLNVVDLIVD IMFIIDILIN FRTTYVNQNE EVVSDPAKIA IHYFKGWFLI ENSBTAP00000002469/1-1095 PLNVVDLIVD IMFIIDILIN FRTTYVNQNE EVVSDPAKIA IHYFKGWFLI bmy_06224T0/1-973 PLNVVDLIVD IMFIIDILIN FRTTYVNQNE EVVSDPAKIA IHYFKGWFLI BACU019098/1-1096 PLNVVDLIVD IMFIIDILIN FRTTYVNQNE EVVSDPAKIA IHYFKGWFLI 501 550 ENSTTRP00000005694/1-1198 DMVAAIPFDL LIFGSGSDET TTLIGLLKTA RLLRLVRVAR KLDRYSEYGA ENSP00000331727/1-1196 DMVAAIPFDL LIFGSGSDET TTLIGLLKTA RLLRLVRVAR KLDRYSEYGA ENSBTAP00000002469/1-1095 DMVAAIPFDL LIFGSGSDET TTLIGLLKTA RLLRLVRVAR KLDRYSEYGA bmy_06224T0/1-973 DMVAAIPFDL LIFGSGSDET TTLIGLLKTA RLLRLVRVAR KLDRYSEYGA BACU019098/1-1096 DMVAAIPFDL LIFGSGSDET TTLIGLLKTA RLLRLVRVAR KLDRYSEYGA 551 600 ENSTTRP00000005694/1-1198 AVLMLLMCIF ALIAHWLACI WYAIGNVERP YLTDKIGWLD SLGQQIGKRY ENSP00000331727/1-1196 AVLMLLMCIF ALIAHWLACI WYAIGNVERP YLTDKIGWLD SLGQQIGKRY ENSBTAP00000002469/1-1095 AVLMLLMCIF ALIAHWLACI WYAIGNVERP YLTDKIGWLD SLGQQIGKRY bmy_06224T0/1-973 AVLMLLMCIF ALIAHWLACI WYAIGNVERP YLTDKIGWLD SLGQQIGKRY BACU019098/1-1096 AVLMLLMCIF ALIAHWLACI WYAIGNVERP YLTDKIGWLD SLGQQIGKRY 601 650 ENSTTRP00000005694/1-1198 NDSDSSSGPS IKDKYVTALY FTFSSLTSVG FGNVSPNTNS EKIFSICVML ENSP00000331727/1-1196 NDSDSSSGPS IKDKYVTALY FTFSSLTSVG FGNVSPNTNS EKIFSICVML ENSBTAP00000002469/1-1095 NDSDSSSGPS IKDKYVTALY FTFSSLTSVG FGNVSPNTNS EKIFSICVML bmy_06224T0/1-973 NDSDSSSGPS IKDKYVTALY FTFSSLTSVG FGNVSPNTNS EKIFSICVML BACU019098/1-1096 NDSDSSSGPS IKDKYVTALY FTFSSLTSVG FGNVSPNTNS EKIFSICVML 651 700 ENSTTRP00000005694/1-1198 IGSLMYASIF GNVSAIIQRL YSGTARYHMQ MLRVKEFIRF HQIPNPLRQR ENSP00000331727/1-1196 IGSLMYASIF GNVSAIIQRL YSGTARYHMQ MLRVKEFIRF HQIPNPLRQR ENSBTAP00000002469/1-1095 IGSLMYASIF GNVSAIIQRL YSGTARYHMQ MLRVKEFIRF HQIPNPLRQR bmy_06224T0/1-973 IGSLMYASIF GNVSAIIQRL YSGTARYHMQ MLRVKEFIRF HQIPNPLRQR BACU019098/1-1096 IGSLMYASIF GNVSAIIQRL YSGTARYHMQ MLRVKEFIRF HQIPNPLRQR 701 750 ENSTTRP00000005694/1-1198 LEEYFQHAWT YTNGIDMNMV LKGFPECLQA DICLHLNQTL LQNCKAFRGA ENSP00000331727/1-1196 LEEYFQHAWT YTNGIDMNMV LKGFPECLQA DICLHLNQTL LQNCKAFRGA ENSBTAP00000002469/1-1095 LEEYFQHAWT YTNGIDMNMV LKGFPECLQA DICLHLNQTL LQNCKAFRGA bmy_06224T0/1-973 LEEYFQHAWT YTNGIDMNMV LKGFPECLQA DICLHLNQTL LQNCKAFRGA BACU019098/1-1096 LEEYFQHAWT YTNGIDMNMV LKGFPECLQA DICLHLNQTL LQNCKAFRGA 751 800 ENSTTRP00000005694/1-1198 SKGCLRALAM KFKTTHAPPG DTLVHCGDVL TALYFLSRGS IEILKDDIVV ENSP00000331727/1-1196 SKGCLRALAM KFKTTHAPPG DTLVHCGDVL TALYFLSRGS IEILKDDIVV ENSBTAP00000002469/1-1095 SKGCLRALAM KFKTTHAPPG DTLVHCGDVL TALYFLSRGS IEILKDDIVV bmy_06224T0/1-973 SKGCLRALAM KFKTTHAPPG DTLVHCGDVL TALYFLSRGS IEILKDDIVV BACU019098/1-1096 SKGCLRALAM KFKTTHAPPG DTLVHCGDVL TALYFLSRGS IEILKDDIVV 801 850 ENSTTRP00000005694/1-1198 AILGKNDIFG EMVHLYAKPG KSNADVRALT YCDLHKIQRE DLLEVLDMYP ENSP00000331727/1-1196 AILGKNDIFG EMVHLYAKPG KSNADVRALT YCDLHKIQRE DLLEVLDMYP ENSBTAP00000002469/1-1095 AILGKNDIFG EMVHLYAKPG KSNADVRALT YCDLHKIQRE DLLEVLDMYP bmy_06224T0/1-973 AILGKNDIFG EMVHLYAKPG KSNADVRALT YCDLHKIQRE DLLEVLDMYP BACU019098/1-1096 AILGKNDIFG EMVHLYAKPG KSNADVRALT YCDLHKIQRE DLLEVLDMYP 851 900 ENSTTRP00000005694/1-1198 EFSDHFLTNL ELTFNLRHES AKADLLLQSQ SMNDSEGDNC KLRRRRLSFD ENSP00000331727/1-1196 EFSDHFLTNL ELTFNLRHES AKADLL-RSQ SMNDSEGDNC KLRRRKLSFE ENSBTAP00000002469/1-1095 EFSDHFLTNL ELTFNLRHES AK-----RSQ SVNDSEADHC KLRRR-LSFD bmy_06224T0/1-973 EFSDHFLTNL ELTFNLRHES AK-------- CMNDSEGDNC KLRRRRLSFD BACU019098/1-1096 EFSDHFLTNL ELTFNLRHES AKADLLLQSQ CMNDSEGDNY KLRRRRLSFD 901 950 ENSTTRP00000005694/1-1198 SEGE----KG STTNDPEDSV DTIRHYQRSK KHFEEKKSRS SSFISSIDDE ENSP00000331727/1-1196 SEGE----KE NSTNDPEDSA DTIRHYQSSK RHFEEKKSRS SSFISSIDDE ENSBTAP00000002469/1-1095 SEEDKDFGKG STTNDPEDSV DTIRHYQSSK KHFEEKKSRS SSFISSIDDE bmy_06224T0/1-973 SEGEKDFGKG STTNDPEDSV DTIRHYQRSK KHFEEKKSRS SSFISSIDDE BACU019098/1-1096 SEGE----KG STTNDPEDSV DTIRHYQRSK KHFEEKKSRS SSFISSIDDE 951 1000 ENSTTRP00000005694/1-1198 QKPLFSGIVD SPPGIGKVTG LDLEETVPTS GRIPIDKRSH SCKDIADTRS ENSP00000331727/1-1196 QKPLFSGIVD SSPGIGKASG LDFEETVPTS GRMHIDKRSH SCKDITDMRS ENSBTAP00000002469/1-1095 QKPLFSGLAD SPPGIGKATG LDLEETVPTS GRIHIDKRSH SCKDITDTRS bmy_06224T0/1-973 QKPLFSGIVD SPPGIGKVTG LDLEETVPTS GRIPIDKRSH SCKDIADTRS BACU019098/1-1096 QKPLFSGIVD SPPGIGKVTG LDLEETVPTS GRIPIDKRSH SCKDIADTRS 1001 1050 ENSTTRP00000005694/1-1198 WERETAGTQA DESSPSALPR AAWGISETES DLAYGEVEQR LDLLQEQLNR ENSP00000331727/1-1196 WERENAHPQP EDSSPSALQR AAWGISETES DLTYGEVEQR LDLLQEQLNR ENSBTAP00000002469/1-1095 WERENAGTQA DESSPSALQR AAWGVSETES DLTYGEVEQR LDLLQEQLNR bmy_06224T0/1-973 WERETAGTQA DESSPSALPR AAWGISETES DLAYGEVEQR LDLLQEQLNR BACU019098/1-1096 WERETAGTQA DESSPSALPR AAWGISETES DLAYGEVEQR LDLLQEQLNR 1051 1100 ENSTTRP00000005694/1-1198 LESQMTADVQ TILQLLQKQT TVVPPAYSMV TTGTEYQRPV IHLMRTSHPV ENSP00000331727/1-1196 LESQMTTDIQ TILQLLQKQT TVVPPAYSMV TAGSEYQRPI IQLMRTSQPE ENSBTAP00000002469/1-1095 LESQMTADIQ TILQLLQKQT TVVPPAYSMV TAGGEYQRPT IRLMRPRHPV bmy_06224T0/1-973 LESQMTADIQ TILQLLQKQT TVVPPAYSMV ---------- ---------- BACU019098/1-1096 LESQMTADIQ TILQLLQKQT TVVPPAYSMV TTGAEYQRPV IRLMRTSHPV 1101 1150 ENSTTRP00000005694/1-1198 ASIKTDRSFS PSS-QCPEFL DLEKSKLKSK EPLSSGVHLN TASEDNLTSL ENSP00000331727/1-1196 ASIKTDRSFS PSS-QCPEFL DLEKSKLKSK ESLSSGVHLN TASEDNLTSL ENSBTAP00000002469/1-1095 ASIKTDRTFS PSSQQCPEFL DLEKSKLKSK ESLSSGVHLN TASEDNLTSL bmy_06224T0/1-973 ---------- ---------- --EKQGHERQ E--------- ---------- BACU019098/1-1096 ASIKTDRSFS PPS-QCPEFL DLEKSKLKSK ESLSSGVHLN TASEDNLTSL 1151 1200 ENSTTRP00000005694/1-1198 LKQDSDLSLE LHPPRQRKTC LHPIRHPSLT DSSLSTVGIL GLHRHVSDPG ENSP00000331727/1-1196 LKQDSDLSLE LH-LRQRKTY VHPIRHPSLP DSSLSTVGIV GLHRHVSDPG ENSBTAP00000002469/1-1095 LKQDSDLSLE LHPPRQRKTC LHPIRHPSLT DSSLSTVGVL GLHRHVSDPG bmy_06224T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU019098/1-1096 LKQDSNLSLE LHPPRQRKTC LHPIRHPSLT DSSLSPVGIL GLHRHVSDPG 1201 1250 ENSTTRP00000005694/1-1198 LPGK ENSP00000331727/1-1196 LPGK ENSBTAP00000002469/1-1095 LPGK bmy_06224T0/1-973 ---- BACU019098/1-1096 LPGK