KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:18:07 2014 Check: 00 .. Name: BACU009546/1-252 Len: 1351 Check: 1236 Weight: 1.00 Name: ENSTTRP00000004595/1-1346 Len: 1351 Check: 3114 Weight: 1.00 Name: bmy_05141T0/1-830 Len: 1351 Check: 6048 Weight: 1.00 Name: ENSBTAP00000002483/1-1007 Len: 1351 Check: 1291 Weight: 1.00 // 1 50 BACU009546/1-252 MDLLSGTYIF AVLLACVVFQ SGAQEKNYTI REEMPENVLI GDLLKDLNLS ENSTTRP00000004595/1-1346 MDLLSGTYIF AVLLACVVFQ SGAQEKNYTV REEMPENVLI GDLLKDLNLS bmy_05141T0/1-830 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002483/1-1007 MDLLSGTYIF AVLLACVVFQ SGAQEKNYTI REEMPENVLI GDLLKDLNLS 51 100 BACU009546/1-252 LIPDKSLTTP MQFKLVYKTG DVPLIRIEEG TGEIFTTGAR IDREKLCAGV ENSTTRP00000004595/1-1346 LIPDKSLTTP MQFKLVYKTG DVPLIRIEEG TGEIFTTGAR IDREKLCAGV bmy_05141T0/1-830 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002483/1-1007 LIPDKSLTTP MQFKLVYKTG DVPLIRIEEG TGEIFTTGAR IDREKLCAGI 101 150 BACU009546/1-252 LVDTRCFYEV EVAVLPDEIF RLVKIRFLIE DINDNAPLFP ATVINISIPE ENSTTRP00000004595/1-1346 LVDTRCFYEV EVAVLPDEIF RLVKIRFLIE DINDNAPLFP ATVINISIPE bmy_05141T0/1-830 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002483/1-1007 IVDTHCFYEV EVAVLPDEIF RLVKIRFLIE DINDNAPLFP ATVINISIPE 151 200 BACU009546/1-252 NSAINSRYAL PAAIDPDIGI NGVQNYQLIK ---------- ---------- ENSTTRP00000004595/1-1346 NSAINSRYAL PAAIDPDIGI NGVQNYQLIK GQSIFGLDVI ETPEGEKMPQ bmy_05141T0/1-830 ---------- ---------- ---------- ---------- -------MPQ ENSBTAP00000002483/1-1007 NSAINSRYAL PAAIDPDTGI NGVQNYQLIK GQNIFGLDII ETPEGEKMPQ 201 250 BACU009546/1-252 ---------- ---VYL---- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 LIVQKELDRE EKDTYVMKVK VEDGGFPQRS STAILQVSVA DTNDNRPVFK bmy_05141T0/1-830 LIVQQELDRE EKDTYVMKVK VEDGGFPQRS STAILQVSVA DTNDNRPVFK ENSBTAP00000002483/1-1007 LIVQKELDRE EKDTYVMKVK VEDGGFPQRS STAILQVSVA DTNDNHPVFK 251 300 BACU009546/1-252 ---------- ---------- ---------- RARHHAIFG- ---------- ENSTTRP00000004595/1-1346 ENEIEVSIPE NAPVGTSVTQ LHATDADIGE NARIHFYFSN LVSNMAKRLF bmy_05141T0/1-830 ENEIEVSIPE NAPVGTSVTQ LHATDADIGE NARIHFYFSN LVSNMAKRLF ENSBTAP00000002483/1-1007 EDEIEVSIPE NAPVGSSVTQ LHATDADIGE NARIHFYFSS LVSSVAKRLF 301 350 BACU009546/1-252 ---------- ------RPDP ESNRM----- ---------- ---------- ENSTTRP00000004595/1-1346 HLNSTSGLIT IKEPLDREES PNHRLLVLAS DGGLIPARSM VLVNVTDVND bmy_05141T0/1-830 HLNSTTGLIT IKEPLDREES PNHRLLVLAS DGGLIPARAM VLVNVTDVND ENSBTAP00000002483/1-1007 HLNSTTGLIT VKEPLDREES PNHKLLVLAS DGGLMPARAM VLVNVTDVND 351 400 BACU009546/1-252 ---------- ---------- ---------- ---------- -HNAGIRPLT ENSTTRP00000004595/1-1346 NVPSIDIRYI INPINGTVVL SENSPLNTKI ALITVTDKDA DLNGRVTCFT bmy_05141T0/1-830 NVPSIDIRYI INPINGTVVL SENAPLNTKI ALITVTDKDA DHNGRVTCFT ENSBTAP00000002483/1-1007 NVPLIDIRYI INPINGTVVL SENAPLNTKI ALITVTDKDA DHNGRVTCFT 401 450 BACU009546/1-252 DLVFTF---- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 DHEVPFRLRP VFSNQFLLET AAYLDYESTR EYAIKLLAAD AGKPPLNQSS bmy_05141T0/1-830 DHEVPFRLRP VFSNQFLLET AAYLDYESTR EYAIKLLAAD AGKPPLNQSS ENSBTAP00000002483/1-1007 DHEVPFRLRP VFSNQFLLET AAYLDYESTR EYAIKLLASD AGKPPLNQSS 451 500 BACU009546/1-252 ---------- ---------- ---------- -ASQLLHLEM DDTETGLHSA ENSTTRP00000004595/1-1346 MLLIKVKDEN DNAPVFTQPF ISLSVPENNS PGTQLTKISA TDADTGHNAE bmy_05141T0/1-830 MLLIKVKDEN DNAPVFTQPF ISLSVPENNS PGTQLTKISA TDADTAHNAE ENSBTAP00000002483/1-1007 MLLIKLKDEN DNAPVFTQPF ISLSVPENNS PGTQLTKISA TDADTGRNAE 501 550 BACU009546/1-252 ICLICG---- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 INYLLGIDAP SEFNLDRRTG ILTAAKKLDR EKQEKYSFTV LAKDNGMPPL bmy_05141T0/1-830 INYLLSIDAP SEFNLDHRTG ILTAVKKLDR EKQEKYSFTV LAKDNGMPPL ENSBTAP00000002483/1-1007 IHYLLGIDAP SEFNLDHRTG ILTAVKKLDR EKQEKYSFTV LAKDNGMPSL 551 600 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 ITNATVLVTV LDQNDNSPIF THNEYNFYVP ENLPRHGTVG LITVTDPDYG bmy_05141T0/1-830 ITNATVLVTV LDQNDNSPIF THNEYNFYVP ENLPRHGTVG LITVTDPDYG ENSBTAP00000002483/1-1007 ITNATVLVTI LDQNDNSPVF THNEYNFYVP ENLPRHGTVG LITVTDPDYG 601 650 BACU009546/1-252 ---------- ---------- ---------- -DR------- ---------- ENSTTRP00000004595/1-1346 ENSAVTLSIL DASDDFTIDP QTGVIRPNIS FDREKQESYT FYVKAEDGGR bmy_05141T0/1-830 ENSAVTLSIL DANDDFTIDP QTGVIRPNIS FDREKQESYT FYVKAEDGGR ENSBTAP00000002483/1-1007 ENSAVTLSIL DANDDFTIDP QSGVIQPNIS FDREKQESYT FNVKAEDGGR 651 700 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 VSRSSTAKVT INVVDVNDNK PV-VVPSSNY SF-LVLPSTN PGTXXXXXXX bmy_05141T0/1-830 VSRSSTAKVT INVVDVNDNK PVFVVPSSNY SFELVLPSTN PGTVVFTVVA ENSBTAP00000002483/1-1007 VSHSSTAKVT INVVDVNDNK PVFVVPPSNY SFELVSPSAN PGTVVFTVVA 701 750 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05141T0/1-830 VDNDTGMNAE LHYSIVGGNT KGLFMIDQAT GNITLKEKCV LADLGLHKLV ENSBTAP00000002483/1-1007 IDNDTGMNAE LRYSILGGNT KGLFMIDQTT GNITLKEKCV LADLGLHKLI 751 800 BACU009546/1-252 ---------- ---------- ---------- -------QDL EEPTKK---- ENSTTRP00000004595/1-1346 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXV-KNI ETPVTQSIET bmy_05141T0/1-830 VKAKDLGQPD SLFNVVNVNL FVNESVTNAT LIYELVRKNI ETPVTQNIET ENSBTAP00000002483/1-1007 VKAKDLGQPD SLFSVINVNL FVNESMTNAT LIYELVRKNI EIPVTQNVET 801 850 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 ADTSSPSSDY VKIVVAIVAG TITVILVIFI TAVVRCRQSP HLKAAQKNKQ bmy_05141T0/1-830 ADTSSPSSDY VKIVVAIVAG TITVILVIFI TAVVRCRQSP HLKAAQKNKQ ENSBTAP00000002483/1-1007 THTSSPSSDY VKIMVAIVAG TITVILVIFI TAVVRCRQSP HLKAAQKNKQ 851 900 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 NSEWVTPNPE NRQMIMM--K KKKKKKKHTP KNLLLNFVTI EETKADDADN bmy_05141T0/1-830 NSEWVTPNPE NRQMIMMKKK KKKKKKKHTP KNLLLNFVTI EETKADDADN ENSBTAP00000002483/1-1007 NSEWVTPNPE NRQMMMM--- --KKKKKHTP KNLLLNFVTI EEAKADDADN 901 950 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 DGNSITLDLP IELEEQTVGK YNWGTTPTTF KPESPDLARH YKSASPQPAF bmy_05141T0/1-830 DGNSVTLDLP IELEEQTMGK YNWGTTPTTF KPDSPDLARH YKSASPQPAF ENSBTAP00000002483/1-1007 DRNTVTLDLP VELEEQTMVK YNWGTTPTTF KPDSPDLAQH YKSASPQPAF 951 1000 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 QIQPETPLNS KHHIIQELPL DNTFVGCDSI SKCSSSSSDP YSVSECSYPV bmy_05141T0/1-830 QIQPETPLNS KHHIIQELPL DNTFVGCDSI SKCSSSSSDP YSVSECSYPV ENSBTAP00000002483/1-1007 QIQPETPLNL KHHIIQELPL DNTFVGCDSI SKCSSSSSDP YSISECSYPV 1001 1050 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 TTFKTPVSVH TRLPMKEVIR SRTPMKETTT VEIWTHPQPQ QKSEGKKAGK bmy_05141T0/1-830 TTFKTPVSVH TR-------- ---------- ---------- ---------- ENSBTAP00000002483/1-1007 TNIKTPVSVH TR-------- ---------- ---------- ---------- 1051 1100 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05141T0/1-830 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002483/1-1007 ---------- ---------- ---------- ---------- ---------- 1101 1150 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 XXXXXXXXXX XXXXXXXXXX XXXXXAEITV QPTLEEASDN CTQECLILGH bmy_05141T0/1-830 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002483/1-1007 ---------- ---------- ---------- ---------- ---------- 1151 1200 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 SDACWMPASL THSSPLQAQT SALCHSPPLT QTTLRRRNPP VTQTVVLCHS bmy_05141T0/1-830 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002483/1-1007 ---------- ---------- ---------- ---------- ---------- 1201 1250 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 PPVTQAIALC HSPPPAQTST LHHSPPLAQA TALRHSPSPA QASALRYSPP bmy_05141T0/1-830 ---------- --PTDSRTST IEIYSEI--- ---------- ---------- ENSBTAP00000002483/1-1007 ---------- ---------- ---------- ---------- ---------- 1251 1300 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 LAQAATIHCS PPLPQAAALH CSPAQPPMGL QQGWGQSAGP DGLLSLDQGA bmy_05141T0/1-830 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002483/1-1007 ---------- ---------- ---------- ---------- ---------- 1301 1350 BACU009546/1-252 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004595/1-1346 QGSTRSQFYA MSERLHPSDD SIKVIPLKTF TPGQQARPSR GDSPTMEEHP bmy_05141T0/1-830 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002483/1-1007 ---------- ---------- ---------- ---------- ---------- 1351 1400 BACU009546/1-252 - ENSTTRP00000004595/1-1346 L bmy_05141T0/1-830 - ENSBTAP00000002483/1-1007 -