KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:08 2014 Check: 00 .. Name: ENSP00000318999/1-467 Len: 485 Check: 4808 Weight: 1.00 Name: ENSBTAP00000002494/1-481 Len: 485 Check: 7449 Weight: 1.00 Name: ENSTTRP00000004446/1-470 Len: 485 Check: 8018 Weight: 1.00 Name: bmy_04480T0/1-444 Len: 485 Check: 3590 Weight: 1.00 Name: BACU004463/1-384 Len: 485 Check: 258 Weight: 1.00 // 1 50 ENSP00000318999/1-467 MESSTGPRMP LLKYCSVATS LKAPGWDGAA PPWDLSFTYP F----ALQAP ENSBTAP00000002494/1-481 MDSSARPGTP LPKYCSVATT LKAPAWAGTA PPWDLSFTCP L----ACRAP ENSTTRP00000004446/1-470 MDSSPGPGMP LPKYCSVATT LKAPAWAGTA PPWELSFACP L----TSQAP bmy_04480T0/1-444 MDSAAGPGMP LPKYCSVATT LKXPAWAGTA PPWDFSFACP LXSPLASQAP BACU004463/1-384 ----MGPGKK GSR------- ---------- ---------- ---------- 51 100 ENSP00000318999/1-467 WLTGHKPLAR HASSCPCLHV ADPAWQGPGW LGRAGDAANT WVLARREADG ENSBTAP00000002494/1-481 WLTRHSLLTR YASYYPCLHI ADPAWQGPGW LGRVGEAADT WVLARREPDG ENSTTRP00000004446/1-470 WLTRQRPLTR YASHDPCLHI ADPAWQGPGW LRRGGDAADA WVLARREADG bmy_04480T0/1-444 WLTWQSPLTR YASYDPCFHI ADPAWQGPDW LGRGGDAADA W--------- BACU004463/1-384 WLL------- ---------- ----LQGSDK GCSQGKS--- ---------- 101 150 ENSP00000318999/1-467 FYYRAQIKAT PELERQGVLL VEFEAPLVAG PKLPAQQQRV VLEEDVIPLS ENSBTAP00000002494/1-481 FYYRAQIKAA PELERQGVLL VEFEAPLATG PELPAQRQSV VLEEDVIQFS ENSTTRP00000004446/1-470 FYYRAQIKAA PELERQGFLL VEFEAPLVTC PGLPAQRQSV VLEEDVIQFS bmy_04480T0/1-444 ---------- --LERQGVLL VEFEAPLVTC PGLPAQRQSM VLEEDVIQFS BACU004463/1-384 ---------- --LERQGVLL VEFEAPLVTC PGLPAQRQSV VLEEDVIQFS 151 200 ENSP00000318999/1-467 PSVGYSLRPG DKVLALWEPG QQQYGPGTVL LGLEMRDPQR AS-KEKEITV ENSBTAP00000002494/1-481 PTMEFSLRPG DKVLAPWGPD QQRYGPGTVL LGLEAGDLQR ASRKEEEITV ENSTTRP00000004446/1-470 PSVEYSLRLG DKVLALWGPD QQCYGPGTIP LGLEARDPQR AS-KEEEITV bmy_04480T0/1-444 PSVEYSLRLG DKVLALWGPD QQRYGPGTIV LGLEARDPQR AS-KEEEITV BACU004463/1-384 PSVEYSLRLG DKVLALWGPD QQRYGPGTVV LGLEARDPQR AS-KEEEITV 201 250 ENSP00000318999/1-467 HFWNGKAAKV PLGGVQSVSL TIWKKAVERL HKSFTREHPR PLHWAPCCSL ENSBTAP00000002494/1-481 HFWNGRTAPV PLRGVQWVPP AVWKKAVDGL HKPFARQHPR PLLWAPCCSL ENSTTRP00000004446/1-470 HFWNGRTAPV PLGGVRWVPP AVWKKAVDRL HKPFTTEHPR PLLWAPCCSL bmy_04480T0/1-444 HFWNGRTASV PLGGVRWVPP AIWKKAVDRL HKPFTTEHPR PLLWAPSCSL BACU004463/1-384 HFWNGRTAPV PLGGVRWVPP AVWKKAVDRL HKPFTTEHPR PLLWAPCCSL 251 300 ENSP00000318999/1-467 LGPITGRITN ELPPDAPFLC PLCHHHACCQ LLCQGCLCGC PPCGTTWWPL ENSBTAP00000002494/1-481 VGPVTGFVTS GLPLSPPFLC APCYPHAGCR LPVQGCLCCC PLAGPTWWPP ENSTTRP00000004446/1-470 VGPVAGCVTG RLPLTAPFLC PPCHPHACCQ LLGQGCLCCR PLAGPTWWPL bmy_04480T0/1-444 VGPVAGCVTG GLPLSTPFLC PPCHPHACCQ LLGQGCLCCC PLAGPTWWPL BACU004463/1-384 MGPVAGCVTG GLPLSTPFLC PPCHPHAYCQ LLGQGCLCCC PLAGPTWWPL 301 350 ENSP00000318999/1-467 TRTSEVMARE LPELE--PTA QLLPLEGPKE EKVAMHAPLA VSSSS-SSSC ENSBTAP00000002494/1-481 IRTSGVAARE PPEAELKPTA QLLPLENPEE EEVAVQAPAA VSSSSTSSSS ENSTTRP00000004446/1-470 TRTSGVTARE HPETELKPTA QLLPLEGPKE EEVAVQAPMA VSSSSTSSSS bmy_04480T0/1-444 TRTSGVTARE HLQAELKPTA QLLPLEDPEE EEAAVQAPMA VSSSSTSSSS BACU004463/1-384 TITSGVTARE HLQAELKPTA QLLPLEDPEE EEAAVQPPMA ISSSSTSSSS 351 400 ENSP00000318999/1-467 EQDGVENDLE MGPPQRLMVN SAVNTDPIFL EM-PLRQSGL CQPEWRYWKR ENSBTAP00000002494/1-481 EDEDLENELE MGPPQRLLVD STVNTDPILL EKSPRKQGGL CQPEWRYWRR ENSTTRP00000004446/1-470 EEEDLENELK MGLPQRLLVD STGNTAPVLL EESPRRQGGL CQPEWRYWRR bmy_04480T0/1-444 EEEDLENKLE MGLPQRLLVD STGNTAPILL EESPRRQGGL CQPEWRYWRR BACU004463/1-384 SEEDLENKLE MGLPQRLLVD STGNTAPILL EESPRRQGGL CQPEWRYWRR 401 450 ENSP00000318999/1-467 NGPEPCLGKP GTRYSNICKE EKDHKQQRAQ TAVVGTTKEL VSKATHMKPP ENSBTAP00000002494/1-481 NGPEPYPGKP GIRLCSTQKD EKSNRQQREK PAAAGSPREL ALNVTGMKLL ENSTTRP00000004446/1-470 NGSEPHPRKP GTRLCNIGKE EKGNKQQKVK TAAAGSPREL VLEATGMKPL bmy_04480T0/1-444 NGSEPHPRKP GTRLCNIGKE EKGNEQQTVK TAAVGSPREL VLEATGMKPL BACU004463/1-384 NGSEPHPRKP GTRLCNIGKE EKGNKQQTVK TAAVGSPREL VLEATGMKPL 451 500 ENSP00000318999/1-467 RTPPGEAEHR KRSQSLAICQ WNKNSR---- ----- ENSBTAP00000002494/1-481 QILPKEAGHR KLSQGTAAHQ RGQNSETKSP KDQGS ENSTTRP00000004446/1-470 QILPEEAEHK KLSRGTAAHQ DQNSP----- ----- bmy_04480T0/1-444 QILPEEAEHK KLSRGS---- ---------- ----- BACU004463/1-384 QILPEEAEHK KLSRGTAAHQ GD-------- -----