KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:15 2014 Check: 00 .. Name: ENSBTAP00000002512/1-342 Len: 435 Check: 2549 Weight: 1.00 Name: bmy_14628T0/1-252 Len: 435 Check: 8130 Weight: 1.00 Name: ENSP00000305664/1-376 Len: 435 Check: 6337 Weight: 1.00 Name: BACU013503/1-360 Len: 435 Check: 9941 Weight: 1.00 Name: ENSTTRP00000006156/1-376 Len: 435 Check: 55 Weight: 1.00 // 1 50 ENSBTAP00000002512/1-342 MEEPEEQPPH E--------- ---------- ---------- --ADTEPVVT bmy_14628T0/1-252 MEGQEEQPPR EVGRPGALHS PPVLGPSAAW GLPSEWGLAT RPGEQGPVAR ENSP00000305664/1-376 MDGEEQQPPH E--------- ---------- ---------- --ANVEPVVP BACU013503/1-360 ------MPPQ A--------- ---------- ---------- -------VLR ENSTTRP00000006156/1-376 MEGQDEQPLR E--------- ---------- ---------- --ASTEPIVT 51 100 ENSBTAP00000002512/1-342 SGASEAVPRV LPGDPQN--- ---------- ---------- -LSDVDAFNL bmy_14628T0/1-252 GRERPPCASA FRGAARTPVP APRRPRPPVR EDGPELGLAV PAADVDAFNL ENSP00000305664/1-376 SEASEPVPRV LSGDPQN--- ---------- ---------- -LSDVDAFNL BACU013503/1-360 GQSGSAVTPV --G------- ---------- ---------- -GADVDAFNL ENSTTRP00000006156/1-376 SGGSEVVPRV LPGEPQN--- ---------- ---------- -LSDVDAFHL 101 150 ENSBTAP00000002512/1-342 LLEMKLKRRR ERPNLPHTVT ELVAEDGSRV YVVGTAHFSD DSKRDVVKTI bmy_14628T0/1-252 LLEMKLKRRQ ERPNLPRTVT ELVAEDGSRV YVVGTAHFSD DSKKDVVKTI ENSP00000305664/1-376 LLEMKLKRRR QRPNLPRTVT QLVAEDGSRV YVVGTAHFSD DSKRDVVKTI BACU013503/1-360 LLEMKLKRRQ ERPNLPRTVT ELVAEDGSRV YVVGTAHFSD DSKKDVVKTI ENSTTRP00000006156/1-376 LLEMKLKRRQ ERPNLPRTVT ELVAEDGSRV YVVGTAHFSD DSKKDVAKTI 151 200 ENSBTAP00000002512/1-342 REVQPDVVVV ELCQYRVSML KMDERTLLRE AKEISLEKLQ QAIRQNGVAS bmy_14628T0/1-252 REVQPDVVVV ELCQYRVSML KMDERTLLRE AKEISLEKLQ QAVRQNGVMS ENSP00000305664/1-376 REVQPDVVVV ELCQYRVSML KMDESTLLRE AQELSLEKLQ QAVRQNGLMS BACU013503/1-360 REVQPDVVVV ELCQYRVSML KMDERTLLRE AKEISLEKLQ QAVRQNGVMS ENSTTRP00000006156/1-376 R-VQPD--VV ELCQYRVSML -MDERTLLRE AKEISLEKLQ QAVRQNGVMS 201 250 ENSBTAP00000002512/1-342 GLMQMLLLKV SAHITEQLGV APGGEFREAF KEASRVPFCK FHLGDRPIPV bmy_14628T0/1-252 GLMQMLLLKV SAHITEQLGM APGGEFREAF KEVG------ ------PGPA ENSP00000305664/1-376 GLMQMLLLKV SAHITEQLGM APGGEFREAF KEASKVPFCK FHLGDRPIPV BACU013503/1-360 GLMQMLLLKV SAHITEQLGV APGGEFREAF KEASKVPFCK FHLGDRPIPV ENSTTRP00000006156/1-376 GLMQMLLLKV SAHITEQLGM APGGEFREAF KEASKVPFCK FHLGDRPIPV 251 300 ENSBTAP00000002512/1-342 TFKRAIAALS LWQKVKLAWG LCFLSDPISK DDVERCKQKD LLEQMMAEMV bmy_14628T0/1-252 GERRGLG--- -------AWE L--------- ---------- ---------- ENSP00000305664/1-376 TFKRAIAALS FWQKVRLAWG LCFLSDPISK DDVERCKQKD LLEQMMAEMI BACU013503/1-360 TFKRAIAALS FWQKIKLAWG LCFLSDPISK DDVERCKQKD LLEQMMAEMI ENSTTRP00000006156/1-376 TFKRAIAALS FWQKIKLAWG LCFLSDPISK DDVERCKQKD LLEQMMAEMI 301 350 ENSBTAP00000002512/1-342 GEFPDLHRTI VSERDVYLTY MLRQAARRLE LPRASDGEHG ----ARGHGP bmy_14628T0/1-252 ---------- ---------- ---------- ---------- ---------- ENSP00000305664/1-376 GEFPDLHRTI VSERDVYLTY MLRQAARRLE LPRASDAEPR KCVPSVVVGV BACU013503/1-360 GEFPDLHCTI VSERDIYLTY MLRQAAWCLE LPRASDAEHR KCVPSVVVGV ENSTTRP00000006156/1-376 GEFPDLHRTI VSERDIYLTY MLRQAARRLE LPRASDAEPR KCVPSVVVGV 351 400 ENSBTAP00000002512/1-342 RGVG------ -------GAQ VLMRLPPQPS PGS----ASP PWWWASWAWA bmy_14628T0/1-252 ---------- ---------- ---------- SGA------- ---------- ENSP00000305664/1-376 VGMGHVPGIE KNWSTDLNIQ EIMTVPPPSV SGRVSRLAVK AAFFGLLGYS BACU013503/1-360 VGVGHIPGIK KNWSTDLNIQ EIMIVPLLSV SGRVSWLAMK AAFLDLLGYG ENSTTRP00000006156/1-376 VGMGHVPGIE KNWTTDLNIQ EIMTVPPPSV CGRVSWLAAK AAFLGLLGYG 401 450 ENSBTAP00000002512/1-342 TSLALRRTGP LTSTSRRS-- ---------- ----- bmy_14628T0/1-252 ---------- ---------- ---------- ----- ENSP00000305664/1-376 LYWMGRRTAS LVLSLPAAQY CLQRVTEA-R HK--- BACU013503/1-360 LYWLGRRASS LVLSLPAAQY CLQRASEAWP HK--- ENSTTRP00000006156/1-376 LYWMGRRASS LVLSLPAAQY CLQRASEAWP HKTNR