KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:17 2014 Check: 00 .. Name: ENSP00000364965/1-854 Len: 933 Check: 5317 Weight: 1.00 Name: ENSBTAP00000002523/1-858 Len: 933 Check: 1671 Weight: 1.00 Name: ENSTTRP00000003138/1-847 Len: 933 Check: 7588 Weight: 1.00 Name: bmy_07978T0/1-865 Len: 933 Check: 2157 Weight: 1.00 Name: BACU015637/1-840 Len: 933 Check: 6270 Weight: 1.00 // 1 50 ENSP00000364965/1-854 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002523/1-858 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003138/1-847 ---------- ---------- ---------- ----SACRRA TGLPGQASS- bmy_07978T0/1-865 QAGSRAGPGR VFVTHFLESA PKVEKRGGGA SRFGSASRRT TGLPGQASSQ BACU015637/1-840 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000364965/1-854 ---MASEGPR EPESEGIKLS ADVKPFVPRF AGLNVAWLES SEACVFPSSA ENSBTAP00000002523/1-858 ---MASEGRR EPAAEGIKLS ADVKPFVPKF AGLNVGWSES SEARVFPSCA ENSTTRP00000003138/1-847 PPAMASEGPR EPAGEGIKLS ADVKPFVPKF AGLSVAWSEP SEARVFPSCA bmy_07978T0/1-865 PPAMASAGRR EPAGEGIKLS ADVKPFVPKF AGLSVAWSES SEARVFPSCA BACU015637/1-840 ---MASEGPR EPAGEGIKLS ADVKPFVPKF AGLSVAWSES SEARVFPSCA 101 150 ENSP00000364965/1-854 AT-YYPFVQE PPVTEQKIYT EDMAFGASTF PPQYLSSEIT LHPYAYSPYT ENSBTAP00000002523/1-858 ATPYYPCVQE LAVPEQKLYT DDMAFGASAF PSQYFSAEIP LHPYAYSPYT ENSTTRP00000003138/1-847 ATTYYPCVQE LAVPEQKLYA EDMAFGASTF PPQYLSPEIP LHPYAYSPYT bmy_07978T0/1-865 ATTYYPCVQE LAVPEQKLYA EDMAFGASTF PPQYLSPEIP LHPYAYSPYT BACU015637/1-840 ATTYYPCVQE LAVPEQKLYA EDMAFGASTF PPQYLSPEIH LHPYGYSPYT 151 200 ENSP00000364965/1-854 LDSTQNVYSV PGSQYLYNQP SCYRGFQTVK HRNENTCPLP QEMKALFKK- ENSBTAP00000002523/1-858 LQSPQNVCPV PGSPYDDNQP SCFGGFQRLK PRSEHTCPLS QDTKAVFKHL ENSTTRP00000003138/1-847 LESSQNVCPV PGSQYDYNQP GCFGGFQTVK PRNEHVCPLP QDTKALFK-- bmy_07978T0/1-865 LESSRNVCPV PGSQYDYNQP SCFGGFQTVK PRNEHMCPLP QNTKALLK-- BACU015637/1-840 LESSRNVCPV PGSQYDYNQP R-FRGFQTVK PRNKHMCPLP QDTKALFK-- 201 250 ENSP00000364965/1-854 KTYDEKKTYD QQKFDSERAD GTISSEIKSA RGSHHLSIYA ENSLKS---D ENSBTAP00000002523/1-858 KHKEQKKTYD EQKFDSKKTD GPVSSDLKSV KDSPRVSIHA ENSLKSVNAD ENSTTRP00000003138/1-847 -----KKTCD EQKFDTKKTD RPISSDLKSV KSSPRMSIHA ENSLKS---D bmy_07978T0/1-865 -----KKTCD EQKFDTKKTD GPISSDLKSV KSSPRMSIHA ENSLKS---D BACU015637/1-840 -----KKTCD EQKFDTKKTD GPVSSDLKSV KSSPRMSIHA ENSLKS---D 251 300 ENSP00000364965/1-854 GYHKRTDRKS RIIAKNVSTS KPEFEFTTLD FPELQGAENN -MSEIQKQPK ENSBTAP00000002523/1-858 GYYKRTDRKS RIIEKSGSAS KPEFGFTRLD FPELQSPENS EIPKIQKQPK ENSTTRP00000003138/1-847 GYYKRTDRKS RIIEKSGSAS KPEFEFTRLD FPELQGRENS EIPEIQKQLK bmy_07978T0/1-865 GYYKRTDRKS RIIEKSGSAS KPEFEFTRLD FPELQGRENS EIPEIQKQLK BACU015637/1-840 GYYKRTDRKS RIIEKSGSAS KPEFEFTRLD FPELQGRENS EIPEIQKQLK 301 350 ENSP00000364965/1-854 WGPVHSVSTD ISLLREVVKP AAVLSK---- --------GE IVVK-NNPNE ENSBTAP00000002523/1-858 WGPLRSTSTD ISLLREMGTP SAVLSE---- --------GE IVVKNNNRTE ENSTTRP00000003138/1-847 WGPLRSASTD VSLLREVGKP AAVLAE---- --------GE TVVKNNNRTG bmy_07978T0/1-865 WGPLRSASTD VSLLREVGKP AAVLAEIDFE TSRKKLYWGE IVVKNNNRTE BACU015637/1-840 WGPLRSASTD VSLLREVGKP AAVLAE---- --------GE VVVKNNNRTE 351 400 ENSP00000364965/1-854 SVTANAATNS PSCTR-ELSW TPMGYVVRQT LSTELSAAPK NVTSMINLKT ENSBTAP00000002523/1-858 SVTDNAVTSP SSCTRAELSW TPMGYVVRQT LSTELSPAPK NVTSMINLKM ENSTTRP00000003138/1-847 SV-------- -------IML LPVPLHVQET LSTELSPAPK NVTSMINLKM bmy_07978T0/1-865 SVTGNAATSP SSCTR-ELSW TPMGYVVRQT LSTELSPAPK NVTSMINLKM BACU015637/1-840 SVTGNAATSP SSCTR-ELSW TPMGYVVRQT LSTELSPAPK NVTSMINLKM 401 450 ENSP00000364965/1-854 IASSADPKNV SIPSSEALSS DPSYNKEKHI IHPTQKSKAS QGSDLEQNEA ENSBTAP00000002523/1-858 VASPADPKND SMSSSEVLSL EPSY-KEKHV VHLTEKSKAS QGGNPEQNEA ENSTTRP00000003138/1-847 VASSADPKNG SMSSSEVLSS EPSY-KEKHV VHPTKKSRAS QGDDPEQNEA bmy_07978T0/1-865 VASSADPKNG SMSSSEVLSS EPSY-KEKHV VHPTKK---- ---------- BACU015637/1-840 VASSADPKNG SMSSSEVLSS EPSY-KEKHV VHPTKKSRAS QGDDPEQNEA 451 500 ENSP00000364965/1-854 SRKNKKKKEK STSKYEVLTV QEPPRIEDAE EFPNLAVASE RRDRIETPKF ENSBTAP00000002523/1-858 SRKNKKKKEK SKSKYEVLTV QEPPRIEDAE EFPNLAVASE RRDRVESPKF ENSTTRP00000003138/1-847 SRKNKKKKEK SKSKYEVLTV QEPPRIEDAE EFPNLAVASE RRDRVESPKF bmy_07978T0/1-865 ---------- ---------- -------DAE EFPNLAVASE RRDRVESPRF BACU015637/1-840 SRKNRKKKEK SKSKYEVLTV QEPPRIEDAE EFPNLAVASE RRDRVESPKF 501 550 ENSP00000364965/1-854 QSKQQPQDNF KNNVKKSQLP VQLDLGGMLT ALEKKQHSQH AKQSSKPVVV ENSBTAP00000002523/1-858 QSKQQPQNNF KSSRKKSQIP VQLDLGGMLT ALEKKQHSPN AKQSSKPVVF ENSTTRP00000003138/1-847 QSKQQPQNNF KSSGKKSQIP VQLDLGGMLT ALEKKQHSQN AKQSSKPVVF bmy_07978T0/1-865 QSKQQPQNNF KSSGKKSQIP VQLDLGGMLT ALEKKQHSQN AKQSSKPVVF BACU015637/1-840 QSKQQPQNNF KSSGKKSQIP VQLDLGGMLT ALEKKQHSQN AKQSSKPVVF 551 600 ENSP00000364965/1-854 SVGAVPVLSK ECASGERGRR MSQMKTPHNP LDSSAPLMKK GKQREIPKAK ENSBTAP00000002523/1-858 SVGAVPVLSK DSMSGKKGHR LAQVKTPHNP LDSTSPMMKK GKQREVPKAK ENSTTRP00000003138/1-847 SVGAVPVLSK DSMSGKKGHR FGQVKTPHNP LDSSAPLMKK GKQREVPKAK bmy_07978T0/1-865 SVGAVPVLSK DSMSGKKGHR FGQVKTPHNP LDSSAPLMKK GKQREVPKAK BACU015637/1-840 SVGAVPVLSK DSMSGKKGHS FGQVKTPHNP LDSSAPLMKK GKQREVPKAK 601 650 ENSP00000364965/1-854 KPTSLKKIIL KERQERK-QR LQENAVSPAF TSD---DTQD GESGGDDQFP ENSBTAP00000002523/1-858 KPTPLKKIIL KERQERKQQR LQENALSPAF PSDDVQDVQD EESGGDDQVL ENSTTRP00000003138/1-847 KPTSLKKIIL KERQERKQQR LQENAVSPAF ASD---DVQD GESGGDDQAL bmy_07978T0/1-865 KPTSLKKIIL KERQERKQQR LQENAVSPAF ASD---DVQD GESGGDDQAL BACU015637/1-840 KPTSLKKIIL KERQERKQQR LQENAVSPAF ASD---DVQD GESGGDDQAL 651 700 ENSP00000364965/1-854 EQAE-LSGPE GMDELISTPS V-EDKSEEPP GTELQRDTEA SHLAPNHTTF ENSBTAP00000002523/1-858 RPPDMLETPG ETKESVSCVP VVESKSEEQP GAEPQKETEA C--------- ENSTTRP00000003138/1-847 GQPD-PSAPG GTEELVSCAS VAESKSEDQL GAEPQKEVDA C--------- bmy_07978T0/1-865 GQPD-PS--G GMEELVSCAS VAESKSEDRL GAEPQKEVEA C--------- BACU015637/1-840 GQPD-PS--G RTEESVSCAS VAESKSEDRL GAEPQKEVEA C--------- 701 750 ENSP00000364965/1-854 PKIHSRRFRD YCSQMLSKEV DACVTDLLKE LVRFQDRMYQ KDPVKAKTKR ENSBTAP00000002523/1-858 PKIHSRRFRD YCSQMLSKEV DACVTDLLKE LVRFQDRMYQ KDPVKAKAKR ENSTTRP00000003138/1-847 PKIHSRRFRD YCSQMLSKEV DACVTDLLKE LVRFQDRMYQ KDPVKAKTKR bmy_07978T0/1-865 PKIHSRRFRD YCSQMLSKEV DACVTDLLKE LVRFQDRMYQ KDPVKAKTKR BACU015637/1-840 PKIHSRRFRD YCSQMLSKEV DACVTDLLKE LVRFQDRMYQ KDPVKAKTKR 751 800 ENSP00000364965/1-854 RLVLGLREVL KHLKLKKLKC VIISPNCEKI QSKGGLDDTL HTIIDYACEQ ENSBTAP00000002523/1-858 RLVLGLREVL KHLKLRKLKC IIISPNCEKI QSKGGLDDTL HTIIDYACDQ ENSTTRP00000003138/1-847 RLVLGLREVL KHLKLKKLKC VIISPNCEKI QSKGGLDDTL HTIIDYACEQ bmy_07978T0/1-865 RLVLGLREVL KHLKLKKLKC IIISPNCEKI QSKGGLDDTL HTIIDYACEQ BACU015637/1-840 RLVLGLREVL KHLKLKKLKC IIISPNCEKI QSKGGLDDTL HTIIDYACEQ 801 850 ENSP00000364965/1-854 NIPFVFALNR KALGRSLNKA VPVSVVGIFS YDGAQDQFHK MVELTVAARQ ENSBTAP00000002523/1-858 NIPFVFALNR KALGRSLNKA VPVSVVGIFS YDGAQDQFHK MVELTMAARQ ENSTTRP00000003138/1-847 NIPFVFALNR KALGRSLNKA VPVSVVGIFS YDGAQDQFHK MVELTMAARQ bmy_07978T0/1-865 NIPFVFALNR KALGRSLNKA VPVSVVGIFS YDGAQDQFHK MVELTMAARQ BACU015637/1-840 NIPFVFALNR KALGRSLNKA VPVSVVGIFS YDGAQDQFHK MVELTMAARQ 851 900 ENSP00000364965/1-854 AYKTMLENVQ QELVGEPRPQ APPSLPTQGP SCPAEDGPPA LKEKEEPHYI ENSBTAP00000002523/1-858 AYRTMLENAR QELPGELGPC APVGPPSQGP GCPVEDSPLA PTEKEEPHYI ENSTTRP00000003138/1-847 AYRTMLENAH WELPGAPGPL APASPPTQGP SCSAENRPLA PAGKEEPHYI bmy_07978T0/1-865 AYRTMLENAH WELPGEPGPL APASPPTQGP SCSAEDRPLA PAGKEEPRYI BACU015637/1-840 AYRTMLENAR WELPGEPGPL APASPPTQGP SCSAEDRPLA PAGKEEPRYI 901 950 ENSP00000364965/1-854 EIWKKHLEAY SGCTLELEES LEASTSQMMN LNL ENSBTAP00000002523/1-858 QVWRNHVEAY SRCGLELEES LEASTSQMMN LNL ENSTTRP00000003138/1-847 EIWRNHLEAY TRRALELEES LEASTSQMMN LNL bmy_07978T0/1-865 EIWRNHLEAY TQCALELEES LEASTSQMMN LNL BACU015637/1-840 EIWRNHLEAY TQCALELEES LKASTSQMMN LNL