KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:18 2014 Check: 00 .. Name: ENSBTAP00000002525/1-735 Len: 936 Check: 1708 Weight: 1.00 Name: ENSP00000416523/1-862 Len: 936 Check: 6943 Weight: 1.00 Name: ENSTTRP00000003147/1-863 Len: 936 Check: 520 Weight: 1.00 Name: bmy_07976T0/1-905 Len: 936 Check: 6524 Weight: 1.00 Name: BACU015638/1-898 Len: 936 Check: 1818 Weight: 1.00 // 1 50 ENSBTAP00000002525/1-735 MRMCGPVGGL LTALAVVFGT AVAFAPVPRI TWEHREVQLV QFHEPGIFNY ENSP00000416523/1-862 MRMCTPIRGL LMALAVMFGT AMAFAPIPRI TWEHREVHLV QFHEPDIYNY ENSTTRP00000003147/1-863 MRMCAPVGGL LTALTVVFGT AVAFAPIPRI TWEHREVQLV QFHEPGIFNY bmy_07976T0/1-905 MRMCAPVGGL LTALAVVFGT AVAFAPIPRI TWEHREVQLV QFHEPGIFNY BACU015638/1-898 MRMCAPVGGL LTALAVVFGT AVAFAPIPRI TWEHREVQLV QFHEPGIFNY 51 100 ENSBTAP00000002525/1-735 SALLLSENED TLFVGAREAV FALNAHNISK KQHEAYWKVS EDKKARCAEK ENSP00000416523/1-862 SALLLSEDKD TLYIGAREAV FAVNALNISE KQHEVYWKVS EDKKAKCAEK ENSTTRP00000003147/1-863 SSLLLSEDKD TLYVGAREAV FALNAHNISR KQHEAYWKVS EDKKAKCAEK bmy_07976T0/1-905 SALLLSEDKD TLYVGAREAV FALNAHNISK KQHEAYWKVS EDKKAKCAEK BACU015638/1-898 SALLLSEDKD TLYVGAREAV FALNAHNISK KQHEAYWKVS EDKKAKCAEK 101 150 ENSBTAP00000002525/1-735 GKSKQTECLN YIRVLQPLST NALYVCGTNA FQPACDHLNL TSFKFLGKNE ENSP00000416523/1-862 GKSKQTECLN YIRVLQPLSA TSLYVCGTNA FQPACDHLNL TSFKFLGKNE ENSTTRP00000003147/1-863 GKSKQTECLN YIRVLQPLSA SALYVCGTNA FQPACDHLNL TXXXXXXXXX bmy_07976T0/1-905 GKSKQTECLN YIRVLQPLSA SALYVCGTNA FQPACDHLNL TSFKFLGKNE BACU015638/1-898 GKSKQTECLN YIRVLQPLSA SALYVCGTNA FQPACDHLNL TSFKFLGKNE 151 200 ENSBTAP00000002525/1-735 DGKGRCPFDP AQSYTSVMV- ---------- ----DGELYS GTSYNFLGSE ENSP00000416523/1-862 DGKGRCPFDP AHSYTSVMV- ---------- ----DGELYS GTSYNFLGSE ENSTTRP00000003147/1-863 XXXXXXXFDP AQSYTSVMV- ---------- ----DGELYS GTSYNFLGSE bmy_07976T0/1-905 DGKGRCPFDP AQSYTSVMV- ---------- ----DGELYS GTSYNFLGSE BACU015638/1-898 DGKGRCPFDP AQSYTSVMVV VSLCFVPIFS ILTEDGELYS GTSYNFLGSE 201 250 ENSBTAP00000002525/1-735 PIISRNSTHS PLRTEYAIPW LNEPSFVFAD VVRESPEGED LGDDRVYFFF ENSP00000416523/1-862 PIISRNSSHS PLRTEYAIPW LNEPSFVFAD VIRKSPDSPD GEDDRVYFFF ENSTTRP00000003147/1-863 PIISRNSSHS PLRTEYAIPW LNEPSFVFAD VIGESPEGGD DGDDKVYFFF bmy_07976T0/1-905 PIISRNSSHS PLRTEYAIPW LNEPSFVFAD VIGESPEGGD GEDDKVYFFF BACU015638/1-898 PIISRNSSHS PLRTEYAIPW LNEPSFVFAD VIGESPEGGD GEDDKVYFFF 251 300 ENSBTAP00000002525/1-735 TEVSVEYEFV FKLMIPRIAR VCKGDQGGLR TLQKKWTSFL KARLICSRPD ENSP00000416523/1-862 TEVSVEYEFV FRVLIPRIAR VCKGDQGGLR TLQKKWTSFL KARLICSRPD ENSTTRP00000003147/1-863 TEVSVEYEFV FKLMIPRVAR VCKGDQGGLR TLQKKWTSFL KARLICSRPD bmy_07976T0/1-905 TEVSVEYEFI FKLMIPRVAR VCKGDQGGLR TLQKKWTSFL KARLICSRPD BACU015638/1-898 TEVSVEYEFI FKLMIPRVAR VCKGDQGGLR TLQKKWTSFL KARLICSRPD 301 350 ENSBTAP00000002525/1-735 SNLVFNVLRD VFVLRSADLK EPVFYGVFTP QLNNVGLSAV CAYNLSTAEA ENSP00000416523/1-862 SGLVFNVLRD VFVLRSPGLK VPVFYALFTP QLNNVGLSAV CAYNLSTAEE ENSTTRP00000003147/1-863 SNLVFNVLRD VFVLRSPSLK EPMFYGVFTP QLNNVGLSAV CAYNLSTAEA bmy_07976T0/1-905 SNLVFNVLRD VFVLRSPSLK EPMFYGVFTP QLNNVGLSAV CAYNLSTAEA BACU015638/1-898 SNLVFNVLRD VFVLRSPSLK EPVFYGVFTP QLNNVGLSAV CAYNLSTAEA 351 400 ENSBTAP00000002525/1-735 VFSRGKYMQS ATVEQSHTKW VRYNGAVPTP RPGACINREA RAANFSSSLN ENSP00000416523/1-862 VFSHGKYMQS TTVEQSHTKW VRYNGPVPKP RPGACIDSEA RAANYTSSLN ENSTTRP00000003147/1-863 VFSRGKYMQS ATVEQSHTKW VRYNGAVPTP RPGACINREA RAANFSSSLN bmy_07976T0/1-905 VFSRGKYMQS ATVEQSHTKW VRYNGAVPTP RPGACINREA RAANFSSSLN BACU015638/1-898 VFSRGKYMQS ATVEQSHTKW VRYNGAVPTP RPGACINREA RAANFSSSLN 401 450 ENSBTAP00000002525/1-735 LPDKTLQFVK DHPLMDDSVT PIDSRPRLIK GDVNYTQIVV DRARALDGTI ENSP00000416523/1-862 LPDKTLQFVK DHPLMDDSVT PIDNRPRLIK KDVNYTQIVV DRTQALDGTV ENSTTRP00000003147/1-863 LPDKTLXXXX XXXXXXXXXX XXDNRPRLIK SDVNYTQIVV DRTWALDGTV bmy_07976T0/1-905 LPDKTLQFVK DHPLMDDSVT PIDNRPRLIK SDVNYTQIVV DRTRALDGTV BACU015638/1-898 LPDKTLQFVK DHPLMDDSVT PIDNRPRLIK SDVNYTQIVV DRTRALDGTV 451 500 ENSBTAP00000002525/1-735 HDVMFVST-- --------DR GALHKAISLE NDIHIIEETQ LFQDFEPIQS ENSP00000416523/1-862 YDVMFVST-- --------DR GALHKAISLE HAVHIIEETQ LFQDFEPVQT ENSTTRP00000003147/1-863 HDVMFVST-- --------DR GALHKAISLE NNVHIIEETQ LFQDFEPVQT bmy_07976T0/1-905 HDVMFVSTGG SRALGKNMDR GALHKAISLE NDVHIIEETQ LFQDFEPVQT BACU015638/1-898 HDVMFVST-- --------DR GALHKAISLE NDVHIIEETQ LFQDFEPVQT 501 550 ENSBTAP00000002525/1-735 LLLSSKKGRK FVYAGSNSGV VQAPVAFCGK HGTCEDCVLA RDPYCAWSPA ENSP00000416523/1-862 LLLSSKKGNR FVYAGSNSGV VQAPLAFCGK HGTCEDCVLA RDPYCAWSPP ENSTTRP00000003147/1-863 LLLSSKKGRR FVYAGSNSGV VQAPVAFCGK HGTCEDCVLA RDPYCAWSPA bmy_07976T0/1-905 LLLSSKKGRR FVYAGSNSGV VQAPVAFCGK HGTCEDCVLA RDPYCAWSPA BACU015638/1-898 LLLSSKKGRR FVYAGSNSGV VQAPVAFCGK HGTCEDCVLA RDPYCAWSPA 551 600 ENSBTAP00000002525/1-735 VAACVALHQT DSPSRGLIQE M--------- ---------- -------NGD ENSP00000416523/1-862 TATCVALHQT ESPSRGLIQE M--------- ---------- -------SGD ENSTTRP00000003147/1-863 AAACIALYQT DGPSRGLIQE M--------- ---------- -------SGD bmy_07976T0/1-905 AAACIALHQT DGPSRYRPHC MQALLPAPWC QAHALCNLCP VVLQGFDSGD BACU015638/1-898 AAACIALHQT DGPSRGLIQE M--------- ---------- -------SGD 601 650 ENSBTAP00000002525/1-735 ASTC------ ---------- ----PA---- -SSPLPFPPP GSSSLSCLGP ENSP00000416523/1-862 ASVC------ ---------- ----PDKSKG SYRQHFFKHG GTAELKC--S ENSTTRP00000003147/1-863 ASAC------ ---------- ----PDKIKE SYLQHFFKHG GTAELKC--S bmy_07976T0/1-905 ERGCVRLPRT ---------- ----GYKIKE SYLQHFFKHG GTAELKC--S BACU015638/1-898 ASACPVLKEV SSRVVDAVHV YFDVPDKIKE SYLQHFFKHG GTAELKC--S 651 700 ENSBTAP00000002525/1-735 DSSSSPRSPW -------PAS GPG------- ---------- ---------- ENSP00000416523/1-862 QKSNLARVFW KFQNGVLKAE SPKYGLMGRK NLLIFNLSEG DSGVYQCLSE ENSTTRP00000003147/1-863 QKSNLARVVW KFQNGVLKAE SPKYSLVGRK NLLIFNLSEG DSGVYQCLSE bmy_07976T0/1-905 QKSNLARVVW KFQNGVLKAE SPKYSLVGRK NLLIFNLSEG DSGVYQCLSE BACU015638/1-898 QKSNLARVVW KFQNGALKAE SPKYSLVGRK NLLIFNLSEG DSGVYQCLSE 701 750 ENSBTAP00000002525/1-735 ---------- --PDRRLQVT LLP------- -PFLSDQAQH VHA------- ENSP00000416523/1-862 ERVKNKTVFQ VVAKHVLEVK VVPKPVVAPT LSVVQTEGSR IATKVLVAST ENSTTRP00000003147/1-863 ERVKNKTVLQ VVAKHVLEVK VVPRTPVAST SPVTRTEGSR ITSKVSAGPT bmy_07976T0/1-905 ERVKNKTVLQ VVAKHVLEVK VVPRTPVVST SPVTRTEGSR ITSKVSAGPT BACU015638/1-898 ERVKNKTVLQ VVAKHVLEVK VVPRTPVVST SPVTRTEGSR ITSKVSAGPT 751 800 ENSBTAP00000002525/1-735 LGTF--HLFC QATGPADVHF LWEKNGRELE VCVPT----- --QTHA---- ENSP00000416523/1-862 QGSSPPTPAV QATSSGAITL PPKP-APTGT SCEPKIVINT VPQLHSEKTM ENSTTRP00000003147/1-863 QGSFPQTPAL QVTTPSSIAL PSSPEGPTSM SCEPKIVINT VPQVHSEKTM bmy_07976T0/1-905 RGSFPQTPAV QATTPSAIAP PSSPEGPTGT SCEPKIVINT VPEVHSEKTM BACU015638/1-898 RGSFPQTPAV QATTPSAIAP PSSPEGPTGT SCEPKIVINT VPEVHSEKTM 801 850 ENSBTAP00000002525/1-735 ---LPDGRAL VLSWL----- ---------- RDAL-RESAE YRCSAL---- ENSP00000416523/1-862 YLKSSDNRLL MSLFLFFFVL FLCLFFYNCY KGYLPRQCLK FRSALLIGKK ENSTTRP00000003147/1-863 YLKSSDNRLL MFLFLFFFVL FLCLFTYNCY KGYLPGQCLK FRSAMLLGKK bmy_07976T0/1-905 YLKYSDNRLL MFLFLFFFAL FLCLFTYNCY KAYLPGQCLK FRSAMLLGKK BACU015638/1-898 YLKSSDNRLL MFLFLFFFAL FLCLFTYNCY KAYLPGQCLK FRSAMLLGKK 851 900 ENSBTAP00000002525/1-735 ---------- ---------- -SRAGNKTSK ARVTVTRLEA TQQERWTREL ENSP00000416523/1-862 KPKSDFCDRE QSLKETLVEP GSFSQQNGEH PKPALDTGYE TEQDTITSKV ENSTTRP00000003147/1-863 QPTSDFLDCE QSVKETLVEQ GSFSQQNGGQ PKPALDTGYE TEQDTMASRL bmy_07976T0/1-905 QPTSDFSDCE QSMKETLVEQ GSFSQQNGGQ PKPALDTGYE TEQDTVASRL BACU015638/1-898 QPASDFSDCE QSVKETLVEQ GSFSQQNGGQ PKPALDTGYE TEQDTMASRL 901 950 ENSBTAP00000002525/1-735 ASWRAVVGEH DRMMQSWRK- ------AWES CNQDAF ENSP00000416523/1-862 PTDREDSQRI DDLSARDKPF DVKCELKFAD SDADGD ENSTTRP00000003147/1-863 PTDREDSQKI DELPVRDRPF DVKCELKFAD SDADGD bmy_07976T0/1-905 PTDREDSQKI DELPVRDRPF DVKCELKFAD SDADGD BACU015638/1-898 PTDREDSQKI DELPVRDRPF DVKCELKFAD SDADGD