KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:19 2014 Check: 00 .. Name: ENSTTRP00000004682/1-796 Len: 971 Check: 6593 Weight: 1.00 Name: ENSP00000318270/1-834 Len: 971 Check: 5507 Weight: 1.00 Name: ENSBTAP00000002536/1-833 Len: 971 Check: 1530 Weight: 1.00 Name: bmy_21344T0/1-833 Len: 971 Check: 988 Weight: 1.00 Name: BACU017730/1-961 Len: 971 Check: 6545 Weight: 1.00 // 1 50 ENSTTRP00000004682/1-796 MVR------- APGLLTALLG LGLGLALAL- EVGAADCGL- ----HTLF-- ENSP00000318270/1-834 MKH------- TLALLAPLLG LGLGLALSQL AAGATDCKFL GPAEHLTFTP ENSBTAP00000002536/1-833 MVR------- SPDLLAALLG LGLGAVLTLP GAGAAGCRAL GPAERLVFAP bmy_21344T0/1-833 MVR------- APGLLAALLG LGLALALALR RAGAADCGAL GPAERLAFAP BACU017730/1-961 MPRRGHWKDA AEWLDAGLWG LGPIKLLMMF EV---KCG-- ----KVALGS 51 100 ENSTTRP00000004682/1-796 -----WLVSR VRALGLWTSL YGAVXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000318270/1-834 AARARWLAPR VRAPGLLDSL YGTVRRFLSV VQLNPFPSEL VKALLNELAS ENSBTAP00000002536/1-833 AAKARWLAPR VRAPGPLDSL YGTVRGFLSV VQLNPFPAEL IKTLLNEPAS bmy_21344T0/1-833 AAKTRWLAPR VRAPGPLDPL YGTVRRFLSV VQLNPLPAEL IKALLNEPSS BACU017730/1-961 VPKTRWLTPR VRPPGPLDPL YGTVRRFLSV VQLNPLPAEL IKALLNEPSS 101 150 ENSTTRP00000004682/1-796 XXXXXVVQYE AGYVVCAVIT GLYLLVVPAA GLCFCCCRCR RPCGGRVKME ENSP00000318270/1-834 VKVNEVVRYE AGYVVCAVIA GLYLLLVPTA GLCFCCCRCH RRCGGRVKTE ENSBTAP00000002536/1-833 VKVDEVVRYQ AGYVVCAVIA GLYLLAMPTA GLCFCCLRCR RRCGGRVKME bmy_21344T0/1-833 VKADEVVRYE AGYMVCAVIT GLYLLVVPTA GLCFCCCRCR RRCGGRVKME BACU017730/1-961 VKADEVVRYE AGYVVCAVIT GLYLLVVPTA GLCFCCCRCR RRCGGRVKME 151 200 ENSTTRP00000004682/1-796 HKTMACERGT LMAFLLLTTL VLLIGVVTAF VTNQRTHEQM GPSAKALPET ENSP00000318270/1-834 HKALACERAA LMVFLLLTTL LLLIGVVCAF VTNQRTHEQM GPSIEAMPET ENSBTAP00000002536/1-833 HKAMACERAV LVTFLLLTTL VLLIGVVTAF VTNQHMHEQM GPSAEAVPET bmy_21344T0/1-833 HKTMACERGT LVAFLLLTTL VLLIGVVTAF VTNQRTHEQM GPSAKALPET BACU017730/1-961 HKTMACERGT LVAFLLLTTL VLLIGVVTAF VTNQRTHEQM GPSAKALPET 201 250 ENSTTRP00000004682/1-796 LLSLRGLVSD VPQELQAVAQ QFSLP-EQVL EELNXXXXXX XXXXXXXXXX ENSP00000318270/1-834 LLSLWGLVSD VPQELQAVAQ QFSLPQEQVS EELDGVGVSI GSAIHTQLRS ENSBTAP00000002536/1-833 LLSLRGLVSE VPLELQAVAE QFSLPQEQVL KELNGVGSSI GKAIHSQLKS bmy_21344T0/1-833 LLSLRGLVSD VPQELQAVAQ QFSLPQEQVL EELDGVSRSI GNVIHTQLKS BACU017730/1-961 LLSLRGLVSD VPQELQAVAQ QFSLPQEQVL EELDGVSRSI GNVIHTQLKS 251 300 ENSTTRP00000004682/1-796 XXXXXXXXXX XXXXXLQVSV DHLRA-NATS VELQEGQRAL APAVQGHRER ENSP00000318270/1-834 SVYPLLAAVG SLGQVLQVSV HHLQTLNATV VELQAGQQDL EPAIREHRDR ENSBTAP00000002536/1-833 TMYEALASVL SLGQALQVSV DHLRGLNATS VELQEGQEAL APALHGHRQR bmy_21344T0/1-833 TVYEVLASVL SLGQALQVSV DHLRALNATS VELQEGQQAL APAVQGHRER BACU017730/1-961 TVYEVLASVL SLGQALQVSV DQLRALNATS TELQEGQQAL APAVQGHRER 301 350 ENSTTRP00000004682/1-796 LLALLQEPSC RG-CAEALDR AHALELGADF SQVPSVDEAL HRLKGVPEAS ENSP00000318270/1-834 LLELLQEARC QGDCAGALSW ARTLELGADF SQVPSVDHVL HQLKGVPEAN ENSBTAP00000002536/1-833 LLSLLQEPPC QG-CAGALDK SHTLELGADF SQVPSVDHVL HRLKGVPEAN bmy_21344T0/1-833 LLALLQEPGC RG-CAEALDR AHALELGADF SQVPSVDDAL HRLKGVPEAN BACU017730/1-961 LLALLQEPGC RG-CAEALDR AHALELGADF SQVPSVDDAL HQLKGVPEAN 351 400 ENSTTRP00000004682/1-796 FSSMVQEENS TFNALPALAT LQTADVIREL KKVVAQQPRE LRTLVEAFPG ENSP00000318270/1-834 FSSMVQEENS TFNALPALAA MQTSSVVQEL KKAVAQQPEG VRTLAEGFPG ENSBTAP00000002536/1-833 FYSMVLEENT TFNALPILAA LQTADMISEL KKVVAEQPRG LNTMGEAFPV bmy_21344T0/1-833 FSSMVQEENS TFNALPALAT LQMADVIREL KKVVAQQPRE LRTLVEAFPG BACU017730/1-961 FSSMVQEENS TFNALPALAA LQTADVIREL KKVVAQQPRE LRTLVEAFPG 401 450 ENSTTRP00000004682/1-796 WEAASRWSQA LEEVEQCSRP YLKEVQRYEK YRWMVGCLLC SVVLLVVVCN ENSP00000318270/1-834 LEAASRWAQA LQEVEESSRP YLQEVQRYET YRWIVGCVLC SVVLFVVLCN ENSBTAP00000002536/1-833 WEAASRWSQA LEEVEERSRP FLEEVQSYER YRWIAGCVLC SVVLLVVVCN bmy_21344T0/1-833 WEAAAHWSQA LEEMEQSSRP YLKEVQRYEK YRWIVGCVLC SVVLLVVVCN BACU017730/1-961 WEAAARWSQA LEEVEQSSRP YLKEVQRYEK YRWIVGCVLC SVVLLVVVCN 451 500 ENSTTRP00000004682/1-796 LLGLNLGIWG LCNREDPSHS EAKGKAGARF LMVGVGFSFL FAAPLILLVF ENSP00000318270/1-834 LLGLNLGIWG LSARDDPSHP EAKGEAGARF LMAGVGLSFL FAAPLILLVF ENSBTAP00000002536/1-833 LLGLNLGIWG LSAREDPSHS EAKGESGARF LMVGVGFSFL FAVPLIILIF bmy_21344T0/1-833 LLGLNLGIWG LCNREDPSHS EAKGEAGARF LMVGVGFSFL FAAPLILLVF BACU017730/1-961 LLGLNLGIWG LCNREDPSHS EAKGEAGARF LMVGVGFSFL FAAPLILLVF 501 550 ENSTTRP00000004682/1-796 ATFLLGGNVQ TLVCRSWESG ELYEFADTPG SLPSSMNLSQ LL-LKKNLSV ENSP00000318270/1-834 ATFLVGGNVQ TLVCQSWENG ELFEFADTPG NLPPSMNLSQ LLGLRKNISI ENSBTAP00000002536/1-833 STFLVGGNVQ TLVCQSWESG ELYEFVDTPG NLPPSMNLSQ LLGLKKNLSI bmy_21344T0/1-833 ATFLVGGNVQ TLVCRSWESG ELYEFADTPG NLPSSMNLSQ LLGLKKNLSV BACU017730/1-961 ATFLVGGNVQ TLVCRSWESG ELYEFADTPG NLPSSMNLSQ LLGLKKNLSV 551 600 ENSTTRP00000004682/1-796 LLAYQQCRQG AALWTVLQLN DSYDLEKHLD ISEXXXXXXX XXXXXXXXXX ENSP00000318270/1-834 HQAYQQCKEG AALWTVLQLN DSYDLEEHLD INQYTNKLRQ ELQSLKVDTQ ENSBTAP00000002536/1-833 LLAYEQCKQG AVLWTVLQLN DSYDLEKHLD ISQYTIKLQQ ELQKLKVDVK bmy_21344T0/1-833 LLAYQQCKQG AALWTVLQLN DSYDLEKHLD ISQYTGKLQQ ELQKLKVDVK BACU017730/1-961 LLAYQQCKQG AALWTVLQLN DSYDLEKHLD ISQYTAKLQQ ELQKLKVDVK 601 650 ENSTTRP00000004682/1-796 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXKLAQLK ENSP00000318270/1-834 SLDLLSSAAR RDLEALQSSG LQRIHYPDFL VQIQRPVVKT SMEQLAQELQ ENSBTAP00000002536/1-833 NLDLLSPAAR RDLEALQSSG LESIHYPGFL AEIQKPVVNS DVEKLAQELE bmy_21344T0/1-833 NLDLLSPAAR QDLEALQSSG LESIHYPGFL VEIQKPVVNV SVEKLAQELE BACU017730/1-961 NLDLLSPAAR QDLEALQSSG LESIHYPGFL VEIQKPVVNI SVEKLAQELE 651 700 ENSTTRP00000004682/1-796 GLAQTQGNTV LAQQLQKEAQ GLRNLRQEKL LLQQRLVAKL NLSVHALASS ENSP00000318270/1-834 GLAQAQDNSV LGQRLQEEAQ GLRNLHQEKV VPQQSLVAKL NLSVRALESS ENSBTAP00000002536/1-833 GLSQTQGNAT LGQKLQEEAR GLQHLHQEKI LPQQNLVAKL NRSVQALASS bmy_21344T0/1-833 RLSQTQGNTV LGQQLQEEAQ GLRNLHQEKL LLQQSLVAKL NLSVHALASS BACU017730/1-961 RLSQTQGNTV LGQRLQKEAQ GLRNLHQEKL LLQQSLVAKL NLSVHALASS 701 750 ENSTTRP00000004682/1-796 APLLQLETSD VLDRVTHLKG ELPTWATRIL KNETECFLTR EMGYFSQYVA ENSP00000318270/1-834 APNLQLETSD VLANVTYLKG ELPAWAARIL RNVSECFLAR EMGYFSQYVA ENSBTAP00000002536/1-833 APHLQSEISG VLDRVTHLKE ELPTWATHIL RNESECFLKR EMGYFSQYMA bmy_21344T0/1-833 APLLQPETSD VLDRVTHLKG ELPTWATRIL KNESECFLTR EMGYFSQYVA BACU017730/1-961 APLLQLETSD VLDRVTHLEG ELPTWATRIL KNESECFLTR EMGYFSQYVA 751 800 ENSTTRP00000004682/1-796 WVREEVTQRI ATCQPLSTAL DNGRVILCDM VADPWNAFWF CLGWCAFFLI ENSP00000318270/1-834 WVREEVTQRI ATCQPLSGAL DNSRVILCDM MADPWNAFWF CLAWCTFFLI ENSBTAP00000002536/1-833 WVREEVTQRI ATCQPLSGAL DSGRVILCDM VADPWNAFWF CLGWCTFFLI bmy_21344T0/1-833 WVREEVTQRI ATCQPLSGAL DNGRVILCDM VADPWNVFWF CLGWCTFFLI BACU017730/1-961 WVREEVTQRI ATCQPLSGAL DNGRVILCDM VADPWNAFWF CLGWCAFLLI 801 850 ENSTTRP00000004682/1-796 PSVIFAVKTS RYFHPIGKRL ---------- ---------- ---------- ENSP00000318270/1-834 PSIIFAVKTS KYFRPIRKRL S--------- ---------- ---------- ENSBTAP00000002536/1-833 PSIVFAIKTS KYFRPIRKRL S--------- ---------- ---------- bmy_21344T0/1-833 PSIIFAVKTS KYFXPIRKRL S--------- ---------- ---------- BACU017730/1-961 PSVIFAVKTS KYFRPIRKRL SWKLISLLIQ KKASLGSGSS VLTPNLGGGA 851 900 ENSTTRP00000004682/1-796 ---------- ---------- ---------- ---------- ---------- ENSP00000318270/1-834 -STSSEETQ- ---------- ---------- ---------- ---------- ENSBTAP00000002536/1-833 -STSSEETQ- ---------- ---------- ---------- ---------- bmy_21344T0/1-833 -SXSSEETQ- ---------- ---------- ---------- ---------- BACU017730/1-961 FSGSTSEDQA ITKARPVLDG MTGKVSKLMY GVWETRRLGR KLRPTLGPHW 901 950 ENSTTRP00000004682/1-796 ---------- ---------- ---------- ---------- ---------- ENSP00000318270/1-834 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002536/1-833 ---------- ---------- ---------- ---------- ---------- bmy_21344T0/1-833 ---------- ---------- ---------- ---------- ---------- BACU017730/1-961 LGRSCKSGNS LHGGPGTCEY TCGVHVRSLS PASWDDQKHE VTTISYKQLN 951 1000 ENSTTRP00000004682/1-796 ---------- ---------- - ENSP00000318270/1-834 --------LF HIPRVTSLKL - ENSBTAP00000002536/1-833 --------LF HIPRVTSLKL - bmy_21344T0/1-833 --------LF HIPRVTSLKL - BACU017730/1-961 WEAHIFTGLF FCSRVKAIVF H