KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:18:20 2014 Check: 00 .. Name: bmy_18624T0/1-1360 Len: 1405 Check: 4332 Weight: 1.00 Name: ENSTTRP00000000817/1-982 Len: 1405 Check: 8310 Weight: 1.00 Name: ENSP00000257189/1-999 Len: 1405 Check: 4168 Weight: 1.00 Name: ENSBTAP00000002538/1-988 Len: 1405 Check: 6758 Weight: 1.00 // 1 50 bmy_18624T0/1-1360 IPSTDWRLRQ TREHRCCCVR CSVSIPLAAT PHELPIIILG QVNGASLNQA ENSTTRP00000000817/1-982 ---------- ---------- ---------- ---------- ---------- ENSP00000257189/1-999 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002538/1-988 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_18624T0/1-1360 KSGTLLSYNG AHTLFTPPNQ ESLDGISKYK NEIPVKSLTC VQLPTEDFIA ENSTTRP00000000817/1-982 ---------- ---------- ---------- ---------- ---------- ENSP00000257189/1-999 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002538/1-988 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_18624T0/1-1360 SGIETAETLR GLSSDVACRR LEGLKQQLPW IRSPRKSETM AWLLFRTTGA ENSTTRP00000000817/1-982 ---------- ---------- ---------- ---------M AWLLFRTTGA ENSP00000257189/1-999 ---------- ---------- ---------- ---------M MGLFPRTTGA ENSBTAP00000002538/1-988 ---------- ---------- ---------- ---------M AWLPFRTTGA 151 200 bmy_18624T0/1-1360 LTILMVVLLV HGELRIETRG QHGEYETAVQ QGKRRYKREW VKFARPCREE ENSTTRP00000000817/1-982 LAILMVVLLV HGELRIETKG QHGEYETAV- QGKRRYKREW VKFARPCREE ENSP00000257189/1-999 LAIFVVVILV HGELRIETKG QYDEEEMTMQ QAKRRQKREW VKFAKPCREG ENSBTAP00000002538/1-988 LAILMVVLLV HGELRIQTKG QYEEYETAI- QGKRRYKREW VKFARPCREG 201 250 bmy_18624T0/1-1360 EDNSKRNPIA TITSDFQANQ DITYHISGIG IDQPPFGIFI VDRNTGGINI ENSTTRP00000000817/1-982 EDNSKRNPIA TITSDFKATQ NITYHISGIG VDQPPLGIFI IDKYTGEINI ENSP00000257189/1-999 EDNSKRNPIA KITSDYQATQ KITYRISGVG IDQPPFGIFV VDKNTGDINI ENSBTAP00000002538/1-988 EDNSNRNPIA KITSDFEATQ KITYHISGIG IDQPPFGIFV VDRNTGEINI 251 300 bmy_18624T0/1-1360 TTIVDREETP SFQITCRALN VLGEDVEKPL ILTVKILDIN DNVPVFSKSI ENSTTRP00000000817/1-982 TAIVDREVTP SFQITCRALS VLGQEVEKPL ILTVKILDIN DNAPVFSQSV ENSP00000257189/1-999 TAIVDREETP SFLITCRALN AQGLDVEKPL ILTVKILDIN DNPPVFSQQI ENSBTAP00000002538/1-988 TAIVDREVTP SFQITCRALN ALGQDVEKPL ILTVKILDIN DNAPVFSQSI 301 350 bmy_18624T0/1-1360 FMGEIEERSA SNSLVMTLNA TDADEPNNLN SKIAFKILSQ EPAGTPMFLL ENSTTRP00000000817/1-982 LTGEIEENSA SNSLVMILNA TDADEPNHLN SIIAFKIISQ EPAGTPMFLI ENSP00000257189/1-999 FMGEIEENSA SNSLVMILNA TDADEPNHLN SKIAFKIVSQ EPAGTPMFLL ENSBTAP00000002538/1-988 FQGEIEENSA SNSLVMILNA TDADEPNHLN SKIAFKIISQ EPAGTSMFLL 351 400 bmy_18624T0/1-1360 SRHTGEVHTL TNSLDREQVS SYNLVVHGAD RDGEGLATQC ECNIKVKDVN ENSTTRP00000000817/1-982 SRHTGEVHTL TSSLDREQVS EYHLVVSGTD KDGEGLAAQC ECSIKVKDVN ENSP00000257189/1-999 SRNTGEVRTL TNSLDREQAS SYRLVVSGAD KDGEGLSTQC ECNIKVKDVN ENSBTAP00000002538/1-988 SRHTGEVRTL TNSLDREQVS SYRLVVSGAD RDGEGLSSQC ECSIKVKDVN 401 450 bmy_18624T0/1-1360 DNIPMFRKLQ YSASIKENTL SSDLLRFQVI DLDEEFTDNW FAVYSFTSGN ENSTTRP00000000817/1-982 DNIPSFTELQ YSASIKENTL SSDLLRFQVI DLDEEFTDNW LAEYFFTSGN ENSP00000257189/1-999 DNFPMFRDSQ YSARIEENIL SSELLRFQVT DLDEEYTDNW LAVYFFTSGN ENSBTAP00000002538/1-988 DNFPTFRESQ YLARIEENTL SSELLRIQVI DLDEEFTDNW LADFFFTSGN 451 500 bmy_18624T0/1-1360 DGNWFEIQTD PITNEGILKV VKSLDYEQLQ TWKLNVIVTN KAEFHKSIIS ENSTTRP00000000817/1-982 DGNWFEIQTD LTTNEGILKV VKSLDYEELQ TLQLGIAVKN KAEFHKSIIS ENSP00000257189/1-999 EGNWFEIQTD PRTNEGILKV VKALDYEQLQ SVKLSIAVKN KAEFHQSVIS ENSBTAP00000002538/1-988 EGHWFEIETD PRTNEGILKV VKSLDYEQVQ SMQLGIAVKN KAEFHQSVIS 501 550 bmy_18624T0/1-1360 QHGVQPIQLI IQVINGR--- ---------- ---------- -NYIPSSFQ- ENSTTRP00000000817/1-982 QYTVQSTSLI IKVINMREGI VFRPASKTFT VQKGISGKNL ISYIVGSYQA ENSP00000257189/1-999 RYRVQSTPVT IQVINVREGI AFRPASKTFT VQKGISSKKL VDYILGTYQA ENSBTAP00000002538/1-988 QYQVQSTPLI VQVINVREGI AFRPSSKTFT VRKGISSRQL INYVLGTYQA 551 600 bmy_18624T0/1-1360 ---DIYYPKR HKQYTLGYNY GDLLIIGSKT AQIEFVKSIN WAATFMVNKT ENSTTRP00000000817/1-982 IDEDTGKPAL FVKYTLRRND GGLLTIDSNT AEIKFVKNTV RDVAVIVNKT ENSP00000257189/1-999 IDEDTNKAAS NVKYVMGRND GGYLMIDSKT AEIKFVKNMN RDSTFIVNKT ENSBTAP00000002538/1-988 IDEDTGEVAS FVRYVLGRND GGLLMIDSET AGIKFVKNID RDVTFIVNKT 601 650 bmy_18624T0/1-1360 ITAEVLAIDE ITGKTSTGTI CVQIPGFNED CPIIVLEKET ICSSSPSVVV ENSTTRP00000000817/1-982 ITAEVLATDE KTGETATGTI FVRLPDFNDK CPTIVLEKKT TCSSSPSVVV ENSP00000257189/1-999 ITAEVLAIDE YTGKTSTGTV YVRVPDFNDN CPTAVLEKDA VCSSSPSVVV ENSBTAP00000002538/1-988 ITAEVLAIDG NTGKTSTGTI FVLVPDFNEK CPTIALEKEA VCSSSPSVVV 651 700 bmy_18624T0/1-1360 KIILMGKGEY TGPYTFLQKE KTTEL---WE ITTLDATSAI LRSTQQVSPG ENSTTRP00000000817/1-982 TARSLE-DDY TGPYTFSQDN QIINVP-VWT ITKLNDTSAT LTTLQPVYPG ENSP00000257189/1-999 SARTLN-NRY TGPYTFALED QPVKLPAVWS ITTLNATSAL LRAQEQIPPG ENSBTAP00000002538/1-988 RASPLERDKY AGPYEFSVEH QSLKLPVVWS ISGRDATSAL LTAPQPVSPG 701 750 bmy_18624T0/1-1360 TYRISPVITD SKGMWCETPK SLVLEVCQCD NSGTCRVPIT TETPEQPTEE ENSTTRP00000000817/1-982 VYRISLVVTD DKGTWCKTLE DLTLEVCLCD NNNICKTLPT TTTPQPVE-- ENSP00000257189/1-999 VYHISLVLTD SQNNRCEMPR SLTLEVCQCD NRGICGTSYP TTSPGTRYGR ENSBTAP00000002538/1-988 VYRISVMVTD SEGRRCEEPE SLTLEVCQCD YRDICPNVYP TSIPNPIIGE 751 800 bmy_18624T0/1-1360 -RPGRLGSAA IGLLLLGLLL LLLALLLLLT CYCGTGPIGG VTGGFNPVPD ENSTTRP00000000817/1-982 -TPGRLGPAA IGLLFLGLLL LLLAPLLLLT CYFGTGPIGG VSGGFMPVPD ENSP00000257189/1-999 PHSGRLGPAA IGLLLLGLLL LLLAPLLLLT CDCGAGSTGG VTGGFIPVPD ENSBTAP00000002538/1-988 -RSGRMGAAA IGLLFLGLLL LLLALLLLLT CDCGAGPIGG VTGGFVPVPD 801 850 bmy_18624T0/1-1360 GSEGTIRPWG IEGAQPEDKE IANIYVPPII ANGVDFTENS EVRTNTYAGG ENSTTRP00000000817/1-982 GSEGAIRPWG IEGAQPEDKE IANIYVPPIT ANRVDYMENS EVFTNTCTGG ENSP00000257189/1-999 GSEGTIHQWG IEGAHPEDKE ITNICVPPVT ANGADFMESS EVCTNTYARG ENSBTAP00000002538/1-988 GSEGTIHPWG IEGAQPEDKE ITNIGVPPIT ANGVDFMENS EVCTNTYAGG 851 900 bmy_18624T0/1-1360 TVVEGALGME VTTHPGAAAG SGAAA----- -------EFR TAAGLSNYST ENSTTRP00000000817/1-982 TVMEGASGME VTTRIGAAAG SGAAA----- -------AFG AAAGLSNCSA ENSP00000257189/1-999 TAVEGTSGME MTTKLGAATE SGGAAGFATG TVSGAASGFG AATGVGICSS ENSBTAP00000002538/1-988 TVVEGASGME LTTNLGAAAG SGGAA----- -------GFG ATAGLSNFSV 901 950 bmy_18624T0/1-1360 GQSGTMRTRH SMEGTNMDYG EGAINMNFLD SYLSQKAFAC AEEDDGQEAN ENSTTRP00000000817/1-982 GRSGTMRTRH SMEGTNMDYG EGAINMNFLD SYFSQKAFAC AEEDDGQEAN ENSP00000257189/1-999 GQSGTMRTRH STGGTNKDYA DGAISMNFLD SYFSQKAFAC AEEDDGQEAN ENSBTAP00000002538/1-988 GQSGTMRTRH STGGTNKDFG EGAINMKFLD SYFSQKAFAC ADEDDSQEAN 951 1000 bmy_18624T0/1-1360 DCLLIYDNEG MGAPGSPIGS LGCCSFIADE FDDSCLDSLS PKFKKLAEIS ENSTTRP00000000817/1-982 DCLLIYDNEG KGAPGSPVGS LGCCSFIADE FDDSCLDSLS SKFKKLAEIS ENSP00000257189/1-999 DCLLIYDNEG ADATGSPVGS VGCCSFIADD LDDSFLDSLG PKFKKLAEIS ENSBTAP00000002538/1-988 DCLLVYDNEG IEAPSSPVGS LGCCSFIADD FDESFLDSLG PKFKKLAEIS 1001 1050 bmy_18624T0/1-1360 LGMDDEAKNS QLPTKESGSG IESSGQSVQV QQSESVRYQT LSGSQGASVL ENSTTRP00000000817/1-982 LGMDDEAKNS QPPTKESGSG IESRGQSVQV QQSESVRYQI LPGSQGASAV ENSP00000257189/1-999 LGVDGEGKEV QPPSKDSGYG IESCGHPIEV QQTGFVKCQT LSGSQGASAL ENSBTAP00000002538/1-988 LGMDDETKSS QPPTKDSSSR VDACGQHVQV QQSESVRYQT LSGSQGASAL 1051 1100 bmy_18624T0/1-1360 SASGSVLQPA ISIRDPLQHG SYLVTETCSA -SGSHVQTST AVFDPLLTQN ENSTTRP00000000817/1-982 SASGSVLQPA ISILDPLQHG SYLVMETSSA -AGSYVQPST AVFDPLLT-N ENSP00000257189/1-999 STSGSV-QPA VSIPDPLQHG NYLVTETYSA -SGSLVQPST AGFDPLLTQN ENSBTAP00000002538/1-988 SASSSVLQPA VSITDPLQHG SYLVTETYSA SSGSLVQPPA AVFDPLLTQN 1101 1150 bmy_18624T0/1-1360 VIVRERVICP ISSVPGNLHG LAELQGSGSK ICTEDPCSLL MIYLKKIFYI ENSTTRP00000000817/1-982 VIVTERVICP ISSVPGHLHG LAELQGSGRK ICTEDPCSLL M--------- ENSP00000257189/1-999 VIVTERVICP ISSVPGNLAG PTQLRGSHTM LCTEDPCSRL I--------- ENSBTAP00000002538/1-988 VIVTERVICP TPSITGNLHG PTELRGSDSK IFTEDPSSRL I--------- 1151 1200 bmy_18624T0/1-1360 KLLPTHFSDP EIKILKGCHK TTPFRTQILL WLTLLILKCR QFKLDLGKMK ENSTTRP00000000817/1-982 ---------- ---------- ---------- ---------- ---------- ENSP00000257189/1-999 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002538/1-988 ---------- ---------- ---------- ---------- ---------- 1201 1250 bmy_18624T0/1-1360 AMQVNSKKIT SSSSSQKVER IKTARSVSLI FIFRNQQSSA RNNTFSTKNT ENSTTRP00000000817/1-982 ---------- ---------- ---------- ---------- ---------- ENSP00000257189/1-999 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002538/1-988 ---------- ---------- ---------- ---------- ---------- 1251 1300 bmy_18624T0/1-1360 EISSALPDPE CTTIPSMTRH RPFQVGVFAF FFFYTWTLFF FFTNAKKKKK ENSTTRP00000000817/1-982 ---------- ---------- ---------- ---------- ---------- ENSP00000257189/1-999 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002538/1-988 ---------- ---------- ---------- ---------- ---------- 1301 1350 bmy_18624T0/1-1360 SKHNAVVVKT QDNDGHSEQF SSTFNNRNKL PGSHGISFPK SEEVFIFFHN ENSTTRP00000000817/1-982 ---------- ---------- ---------- ---------- ---------- ENSP00000257189/1-999 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002538/1-988 ---------- ---------- ---------- ---------- ---------- 1351 1400 bmy_18624T0/1-1360 QEKIAKKFLN YKAIQNQSLS CLLYSALEIP LNTQANRDEF IQIKLWLIHT ENSTTRP00000000817/1-982 ---------- ---------- ---------- ---------- ---------- ENSP00000257189/1-999 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002538/1-988 ---------- ---------- ---------- ---------- ---------- 1401 1450 bmy_18624T0/1-1360 SKVKI ENSTTRP00000000817/1-982 ----- ENSP00000257189/1-999 ----- ENSBTAP00000002538/1-988 -----