KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:31 2014 Check: 00 .. Name: ENSTTRP00000014313/1-839 Len: 911 Check: 1880 Weight: 1.00 Name: ENSP00000362244/1-841 Len: 911 Check: 125 Weight: 1.00 Name: ENSBTAP00000002583/1-595 Len: 911 Check: 3810 Weight: 1.00 Name: bmy_10791T0/1-779 Len: 911 Check: 7725 Weight: 1.00 Name: BACU009670/1-761 Len: 911 Check: 6312 Weight: 1.00 // 1 50 ENSTTRP00000014313/1-839 MESGSRSEPG AGAAPDVAAR TPPEPRPSPE GDPSPPPPPP PMSALVPDTP ENSP00000362244/1-841 MESGPRAELG AGAPPAVVAR TPPEPRPSPE GDPSPPPPP- -MSALVPDTP ENSBTAP00000002583/1-595 PEKGPRSSKS TGQVPAMAAR TPPEPRPSPE GDPSPPPPPP PTSTLVPDTP bmy_10791T0/1-779 ---------- ---------- ---------- ---------- -MSALVPDTP BACU009670/1-761 ---------- ------VAAR TPPEPRPSPE GDPSPPPPPP PMSALVPDTP 51 100 ENSTTRP00000014313/1-839 PDTPPAMKNT TGPKQLPLEP ESPPELVGPR PAPKQEESPF SEVKIRGPTP ENSP00000362244/1-841 PDTPPAMKNA TSSKQLPLEP ESPSGQVGPR PAPPQEESPS SEAKSRGPTP ENSBTAP00000002583/1-595 PDTPPAMKNT TSPKQLPLEP ESPSELVGPR PAPQQEESPS SEVKTRGPTP bmy_10791T0/1-779 PDTPPAMKNT TGPKQLPLEP ESPPELVGPR PALQQEESPF SEVKIRGPTP BACU009670/1-761 PDTPPAMKNT TGPKQLPLEP ESPPELVGPR PALQQEESPF SEVKIRGPTP 101 150 ENSTTRP00000014313/1-839 PATGPRDARP PRRSSQPSPT AGSAADSPPA KQDAKKAGER HKLAKERREE ENSP00000362244/1-841 PAMGPRDARP PRRSSQPSPT AVPASDSPPT KQEVKKAGER HKLAKERREE ENSBTAP00000002583/1-595 PATGPRDARP PRRSSQPSPP AAPASDSPPT KQDVKKAGER HKLAKERREE bmy_10791T0/1-779 PATGPRDARP PRRSSQPSPT AVSAADSPPT KQ-------- ---------- BACU009670/1-761 PATGPRDARP PRRSSQPSPT AVSAANSPPT KQ-------- ---------- 151 200 ENSTTRP00000014313/1-839 RAKYLAAKKA VWLEKEEKAK VLREKQLQER RRRLEEQRLK AEQRRAALEE ENSP00000362244/1-841 RAKYLAAKKA VWLEKEEKAK ALREKQLQER RRRLEEQRLK AEQRRAALEE ENSBTAP00000002583/1-595 RAKYLAAKKA VWLEKEEKAK ALREKQLQER RRRLEEQRLK AEQRRAALEE bmy_10791T0/1-779 -----AAKKA VWLEKEEKAK VLREKQLQER RRRLEEQRLK AEQRRAALEE BACU009670/1-761 -----AAKKA VWLEKEEKA- ---------- ---------- ---------- 201 250 ENSTTRP00000014313/1-839 RQRQKLEKNK ERYEAAIQRS VKKTWAEIRQ QRWSWAGALH HSSPGRKPSG ENSP00000362244/1-841 RQRQKLEKNK ERYEAAIQRS VKKTWAEIRQ QRWSWAGALH HSSPGHKTSG ENSBTAP00000002583/1-595 RQRQKLEKNK ERYEAAIQRS VKKTWAEIRQ QRWSWAGALH HGSPGRKTSG bmy_10791T0/1-779 RQRQKLEKNK ERYEAAIQRS VKKTWAEIRQ QRWSWAGALH HSSPGRKTSG BACU009670/1-761 ---------K ERYEAAIQRS VKKTWAEIRQ QRWSWAGALH HSSPGRKTSG 251 300 ENSTTRP00000014313/1-839 SRCSVSAVNL PKHVDSIINK RLSKSSATLW NSPSRNRSLQ LSPWESSIVD ENSP00000362244/1-841 SRCSVSAVNL PKHVDSIINK RLSKSSATLW NSPSRNRSLQ LSAWESSIVD ENSBTAP00000002583/1-595 SRCSVSAVNL PKHVDSIINK RLSKSSATLW NSPSRNRSLQ LSPWESSIVD bmy_10791T0/1-779 SRCSVSAVNL PKHVDSIINK RLSKSSATLW NSPSRNRSLQ LSPWESSIVD BACU009670/1-761 SRCSVSAVNL PKHVDSIINK RLSKSSATLW NSPSRNRSLQ LSPWESSIVD 301 350 ENSTTRP00000014313/1-839 RLMTPTLSFL ARSRSAVTLP RNGRDQGRGH GPGRAPSRGG TGASLVSRPR ENSP00000362244/1-841 RLMTPTLSFL ARSRSAVTLP RNGRDQGRGC DPGRGPTWGR AGASLARGPQ ENSBTAP00000002583/1-595 RLMTPTLSFL ARSRSAVTLP RNGRDQ---- ---------- ---------- bmy_10791T0/1-779 RLMTPTLSFL ARSRSAVTLP RNGRDQGRGH GPGRAPSRGG TGASLVSGPH BACU009670/1-761 RLMTPTLSFL ARSRSAVTLP RNGRDQGRGH GPGRAPSRGG TG-------- 351 400 ENSTTRP00000014313/1-839 PDRTHPSAAV PVCPRSASAS PLTPCSAPRS GHRCAPAGE- --RRKASAGG ENSP00000362244/1-841 PDRTHPSAAV PVCPRSASAS PLTPCSVTRS VHRCAPAGER GERRKPNAGG ENSBTAP00000002583/1-595 --------VV PLCPRSASAS PLTPCSAPRS GHRCAPAGER GDRRKASAGG bmy_10791T0/1-779 PDLTHPSAAV PVCPRSASAS PLTPCSAPRS GHRCAPAGE- --RRKASAGG BACU009670/1-761 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000014313/1-839 SPAPARLRPE ASLVQKKEKK DKERENEKEK SALARERSLK KRQSLPASPR ENSP00000362244/1-841 SPAPVRRRPE ASPVQKKEKK DKERENEKEK SALARERSLK KRQSLPASPR ENSBTAP00000002583/1-595 SPAPARLRPE ASPVQKKEKK DKERENEKEK SALARERSLK KRQSLPASLR bmy_10791T0/1-779 SPAPARLRPE ASLVQKKEKK DKERENEKEK SALARERSLK KRQSLPASLR BACU009670/1-761 ---------- ASLVQKKEKK DKERENEKEK TALARERSLK KRQSLPASPR 451 500 ENSTTRP00000014313/1-839 ARLSTGNAE- -FXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000362244/1-841 ARLSASTAS- ELSPKSKARP SSPSTSWHRP ASPCPSPGPG HTLPPKPPSP ENSBTAP00000002583/1-595 PRLSASNVEH SLSPKSKGRP SSPSTTSHRP ASPCLSPGPG HALPPKPPSP bmy_10791T0/1-779 TRLSTGNSE- -LSPKSKARP SSPSTSWHRP ASPCLSPGPG HALPPKPPSP BACU009670/1-761 TRLSTGNSE- -LSPKSKARP SSPSTSWHRP ASPCLSPGPG HALPPKPPSP 501 550 ENSTTRP00000014313/1-839 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000362244/1-841 RGTTASPKGR VRRKEEAKES PSAAGPEDKS QSKRRASNEK ESAAPASPAP ENSBTAP00000002583/1-595 RGTTASPKGR VRRKEEAKES PSVAGPEDKT QSKGKASDER EPAAPASPAP bmy_10791T0/1-779 RGTTASPKGR IRRKDEAKES LSVAGPEDKN QSKGKASDEK EPAAPASPAP BACU009670/1-761 RGTTASPKGR VRRKDEAKES LSVAGPEDKN QSKGKASDEK EPAAPASPAP 551 600 ENSTTRP00000014313/1-839 XXXXXXXXXX XXXXXXXXXX XXXTAVLTSP PAPAPLVTPG KPMAGTTDRE ENSP00000362244/1-841 SPAPSPTPAP PQKEQPPAET PTDAAVLTSP PAPAPPVTPS KPMAGTTDRE ENSBTAP00000002583/1-595 SPVPSPTPAQ PPKEQ-PTEI PAKTAVLTSP PAPAPPVTPS KPMAGTTDRE bmy_10791T0/1-779 SPVPSPTPAQ PQEEQ-PTEI PADAAVLTSP PAPAPLVTPS KPMAGTTDRE BACU009670/1-761 SPVPSPTPAQ PQEEQ-PTEI PADAAVLTSP PAPAPLVTAS KPMAGTTDRE 601 650 ENSTTRP00000014313/1-839 EATRLLAEKR RQAREQRERE EQERRLQAER DKRMREEQLA REAEARAERE ENSP00000362244/1-841 EATRLLAEKR RQAREQRERE EQERRLQAER DKRMREEQLA REAEARAERE ENSBTAP00000002583/1-595 EATRLLAEKR RQAREQRERE EQERRLQA-- ---------- ---------- bmy_10791T0/1-779 EATRLLAEKR RQAREQRERE EQERRLQAER DKRMREEQLA REAEARAERE BACU009670/1-761 EATRLLAEKR RQAREQRERE EQERRLQAER DKRMREEQLA REAEARAERE 651 700 ENSTTRP00000014313/1-839 AEARRREEQE AR---EKAQA EQEELERLQK QKEEAEARSR EEAERQRLER ENSP00000362244/1-841 AEARRREEQE AR---EKAQA EQEEQERLQK QKEEAEARSR EEAERQRLER ENSBTAP00000002583/1-595 ---------- ---------- ---------- ---------- ---------- bmy_10791T0/1-779 AEARRREEQE AREKAEKAQA EQEEQERLQK QKEEAEARSR EEAERQRLER BACU009670/1-761 AEARRREEQE AREKAEKAQA EQEEQERLQK QKEEAEARSR EEAERQRLER 701 750 ENSTTRP00000014313/1-839 EKHFQREEQE RQERKKRLEE IMKRTRKSEA AETKQKQDRK EAKANNSSP- ENSP00000362244/1-841 EKHFQQQEQE RQERRKRLEE IMKRTRKSEV SETKQKQDSK EANANGSSP- ENSBTAP00000002583/1-595 ---------- ---------- ---------- ---------- ---------- bmy_10791T0/1-779 EKHFQREEQE RQERKKRLEE IMKRTRKSEA AETKQKQDRK EAKANNSSPG BACU009670/1-761 EKHFQREEQE RQERKKRLEE IMKRTRKSEA AETKQKQDRK EAKANNSSPG 751 800 ENSTTRP00000014313/1-839 -DPVKAMEAR SSGLQKEAVQ KEELAPQEPQ WSLPNKESPG SLVNGLQPLP ENSP00000362244/1-841 -EPVKAVEAR SPGLQKEAVQ KEEPIPQEPQ WSLPSKELPA SLVNGLQPLP ENSBTAP00000002583/1-595 ---------- ---------- ---------- ---------- ---------- bmy_10791T0/1-779 IDPVKATEAR PSGLQKEAVQ KEELAPQEPQ WSLPNKESPG SLVNGLQPLP BACU009670/1-761 IDPVKATEAR PSGLQKEAVQ KEELAPQEPQ WSLPNKESPG SLVNGLQPLP 801 850 ENSTTRP00000014313/1-839 AHQENGFSPK GSSGDKSLGR TPEALLPFAE AEAFLKKAVV QAPQVT---- ENSP00000362244/1-841 AHQENGFSTN GPSGDKSLSR TPETLLPFAE AEAFLKKAVV QSPQVT---- ENSBTAP00000002583/1-595 ---------- ---------- ---------- ---------- ---------- bmy_10791T0/1-779 AHQENGFSPK GPSGDKSLGR TPEALLPFAE AEAFLKKAVV QAPQVT---- BACU009670/1-761 VHQENGFSPK GPSGDKSLGR TPEALLPFAE AEAFLKKAVV QAPQVTGRFP 851 900 ENSTTRP00000014313/1-839 ---------- ---------- ---------- ---------- ---------- ENSP00000362244/1-841 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002583/1-595 ---------- ---------- ---------- ---------- ---------- bmy_10791T0/1-779 ---------- ---------- ---------- ---------- ---------- BACU009670/1-761 CLLDLYLYLP AAFPGLLSRA LSSRSSARGP LKLYPEDPQP SELGAWFPLT 901 950 ENSTTRP00000014313/1-839 --------EV L ENSP00000362244/1-841 --------EV L ENSBTAP00000002583/1-595 ---------- - bmy_10791T0/1-779 --------EV L BACU009670/1-761 VSPPAFFSEV L