KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:18:32 2014 Check: 00 .. Name: ENSTTRP00000010385/1-1575 Len: 1629 Check: 2029 Weight: 1.00 Name: ENSP00000382476/1-1585 Len: 1629 Check: 4996 Weight: 1.00 Name: bmy_06105T0/1-1549 Len: 1629 Check: 1775 Weight: 1.00 Name: ENSBTAP00000002589/1-1589 Len: 1629 Check: 8024 Weight: 1.00 // 1 50 ENSTTRP00000010385/1-1575 --------IL EIFGEINLTL GMLNKEDNIS KEDIYGHLTS VIQNTDILDD ENSP00000382476/1-1585 MTLSTEESI- EMFGDINLTL GMLNKEDIVN KEDIYSHLTS VIQNTDILDD bmy_06105T0/1-1549 MAKDTEESA- EIFGEINLTL GMLNKEDNIS KEDIYGHLTS IIQNTDILDD ENSBTAP00000002589/1-1589 MEGSTEEGVL EILGDINLTL GMLNKEDNIS KEDIYGHLAS IIQNTDILDD 51 100 ENSTTRP00000010385/1-1575 AIVQRLIYYA SKDMRDDNXX XXXXXXXXQE VLVSLAAHDF NSVMYEVQSN ENSP00000382476/1-1585 AIVQRLIYYA SKDMRDNNML REIRMLAG-E VLVSLAAHDF NSVMYEVQSN bmy_06105T0/1-1549 AVVQRLIYYA SKDMRDDNIL REIRMLAG-E VLVSLAARDF NSVMYEVQSN ENSBTAP00000002589/1-1589 AIVQRLIYYA SKDMRDDNIL REIRMLAG-E VLVSLAAHDF NSVMYEVQSN 101 150 ENSTTRP00000010385/1-1575 FGILELPNEF VVLALAELAT SYASQSIPFM MMTLLTMQTM LRLAEEERMK ENSP00000382476/1-1585 FRILELPDEF VVLALAELAT SYVSQSIPFM MMTLLTMQTM LRLAEDERMK bmy_06105T0/1-1549 FRILELPNEF VVLALAELAT SYMSQSIPFM TMTLLTMQTM LRLAEEERMK ENSBTAP00000002589/1-1589 FRILELPNEF VVLALAELAT SYVSQSIPFM MMTLLTMQTM LRLTEEERMK 151 200 ENSTTRP00000010385/1-1575 GAFCIDLEKF SRAIYKYVNH WRDFPYPRLD ASHLSDKIFM LFRYIMDKWA ENSP00000382476/1-1585 GTFCIALEKF SKAIYKYVNH WRDFPYPRLD ANRLSDKIFM LFWYIMEKWA bmy_06105T0/1-1549 GAFCIALEKF SRAIYKYVNH WRDFPYPRLD ANRLSDKIFM LFRYIMDKWA ENSBTAP00000002589/1-1589 GAFCVALEKF SRAIYKYVNH WRDFPYPRLD ANRLSDKIFM LFRYIMDKWA 201 250 ENSTTRP00000010385/1-1575 ATTLPTQIWA IIKAHSPTVS LLLHREDLCE YALGQVPWLL KQYKDKEIDF ENSP00000382476/1-1585 PLASPMQTLS IVKAHGPTVS LLLHREDFRG YALGQVPWLL NQYKDKEIDF bmy_06105T0/1-1549 ATTSPTQILA IIKAHGPTVS LLLCREDLCE YALGQVPWLL KQYKDKEIDF ENSBTAP00000002589/1-1589 STTSPTQILA IIKAHGPTVS LLLHREDLCE YALGQVPWLL NQYKDKEIDF 251 300 ENSTTRP00000010385/1-1575 HVTQSLRQIL TAAVLYDVSL PKALRKTIFI NLLHQVCRVL DPPVKENEIE ENSP00000382476/1-1585 HVTQSLKQIL TAAVLYDIGL PRSLRRSIFI NLLQQICRAP EPPVKENEMK bmy_06105T0/1-1549 HVTQSLRQIL TAAVLYDVSL PKALRKTIFI NLLHQVCRVL DPPVKENEIE ENSBTAP00000002589/1-1589 HVTQSLRQIL TAAVLYDVSL PKALRKAIFI NLLRQVCRVP EPPEKENETE 301 350 ENSTTRP00000010385/1-1575 ASDYFLIL-- AHSSPADLIE FFDEQMRSNN EATRMGILTL LRSAISAEEP ENSP00000382476/1-1585 ASSCFLIL-- AHSNPGELME FFDEQVRSNN EAIRVGILTL LRLAVNADEP bmy_06105T0/1-1549 ASDCFLIL-- AHSSPADLIE FFDEQMRSNN EATRMGILTL LRSAISAEEP ENSBTAP00000002589/1-1589 ASNCFLILAT AHSNPADLMD FFDEQMRNNN EAIRMGILTL LRSAINAEEP 351 400 ENSTTRP00000010385/1-1575 KLRDHIT-IE KTVKVVMGNL SIKVRNSTLL LNQTMCEKRY IEAQEGWPLI ENSP00000382476/1-1585 RLRDHIISIE RTVKIVMGDL STKVRNSVLL LIQTMCEKSY IEAREGWPLI bmy_06105T0/1-1549 KLRDHITSIE KTVKVIMGDL SIKVRNSALL LIQTMCEKCY IEAQEGWPLI ENSBTAP00000002589/1-1589 KLRDHVTSIE KAVKVVMGDL SIKVRNSTLL LIQTMCEKCY IEAREGWPLI 401 450 ENSTTRP00000010385/1-1575 DYIFSQFATS NKNL-KPIKP NSQETEKGEK GIQETSLEVL KTLDPLIIGM ENSP00000382476/1-1585 DYVFSQFATL NRNLEKPVKT NFHENEKEEE SVRETSLEVL KTLDPLVIGM bmy_06105T0/1-1549 DYIFSQFAMS NKNLEKPIKP NSQETKKGEK CIQETSLEVL KTLDPLIIGM ENSBTAP00000002589/1-1589 DYIFTQFSMS NKNLEKPIKP NSQETEKGET SIREISLEVL KTLDPLVIGM 451 500 ENSTTRP00000010385/1-1575 PQMLWPRILT LVVPAEYTGT LKYLFNIIRI LFMAEERKKK NAKDSTALVI ENSP00000382476/1-1585 PQVLWPRILT FVVPAEYTEA LEPLFSIIRI LIMAEEKKQH SAKESTALVV bmy_06105T0/1-1549 PQVLWPRILT FVVPAEYTGT LKYLFNIIRI LFMAEERKRN NAKESTALVT ENSBTAP00000002589/1-1589 PQVLWPRILT FVVPAEYTGT LKYLFNIIRI LFMAEERKKK NAKESTALVI 501 550 ENSTTRP00000010385/1-1575 STGAVKLPSP QQLLARLL-- ---------- ---------- VISMLASLGK ENSP00000382476/1-1585 STGAVKLPSP QQLLARLL-- ---------- ---------- VISMPASLGE bmy_06105T0/1-1549 STGAVKLPSP QQLLARLLKK IGQMDCLRFK RIQNSDKKEK VISMLASLGK ENSBTAP00000002589/1-1589 STGTVKLPSP QQLLARLL-- ---------- ---------- VISMLASVGK 551 600 ENSTTRP00000010385/1-1575 LHGVGAIGLL KILPEIIHPN LVELWKTRIP ELLQPLEGKN TSIVLWETML ENSP00000382476/1-1585 LRGAGAIGLL KILPEIIHPK LVDLWKTRLP ELLQPLEGKN ISTVLWETML bmy_06105T0/1-1549 LRGVGAIGLL XILPEIIHPN LVELWKTRIP ELLQPLEGKN TSIVLWETML ENSBTAP00000002589/1-1589 LRGAGAIGLL KILPEIIHPN LVELWKTRIP ELLQPLEGKN SSIVLWETML 601 650 ENSTTRP00000010385/1-1575 LQQLLKESLW KINDVAWTIQ LSRDFNQQMD SYGNTSVEKK FLWKALGTTL ENSP00000382476/1-1585 L-QLLKESLW KISDVAWTIQ LTQDFKQQMG SYSNNSTEKK FLWKALGTTL bmy_06105T0/1-1549 L-QLLKESLW KINDVAWTIQ LSRDFNQQMD SYGNTSVEKK FLWKALGTTL ENSBTAP00000002589/1-1589 L-QLLKESLW KISDVAWTIQ LSRDFNQQMD SYSNTSVEKK FLWKALGTTL 651 700 ENSTTRP00000010385/1-1575 ASCQDTDFVS SQIKEALAAP NHLGDQCQGI TSILGYCAKN HFEIVLKVLK ENSP00000382476/1-1585 ACCQDSDFVN SQIKEFLTAP NQLGDQRQGI TSILGYCAEN HLDIVLKVLK bmy_06105T0/1-1549 ASCQDTDFVS SQIKESLVAP NHLGDQRQGI ---------- ---------- ENSBTAP00000002589/1-1589 ASCQDVDFVS SQIKEFLAAP HHLGDQRQGI TSILGYCAEK HFEVVLKVLK 701 750 ENSTTRP00000010385/1-1575 TFQDREKFFM NRCKGSFSGK KSLTKTDVMV IYGAVALHAP KRQLLPRLDQ ENSP00000382476/1-1585 TFQNQEKFFM NRCKSLFSGK KSLTKTDVMV IYGAVALHAP KKQLLSRLNQ bmy_06105T0/1-1549 ---------- ------FSGK KSLTKTDVML IYGAVALHAP KRQLLTRLDQ ENSBTAP00000002589/1-1589 TFQDREKFFM NRCKGIFSGK KSLSKTDVMV IYGAVALHAP KSQLLTRLDQ 751 800 ENSTTRP00000010385/1-1575 DIVSQV-FLY GQCSQVLGMA VMNKXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000382476/1-1585 DIISQVLSLH GQCSQVLGMS VMNKDMDLQM SFTRSITEIG IAVQDAEDQG bmy_06105T0/1-1549 DIVSQVLFLY GQCSQVLGMA VMNKDMDLQM SFIRSITEIA IAVQDAEDEK ENSBTAP00000002589/1-1589 DIVSQVLFLY GQCSRVLGMS VANKDMDLQM SFTRSITEIG IAVQDAEDET 801 850 ENSTTRP00000010385/1-1575 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XKLKPQLSLN ENSP00000382476/1-1585 FQFSYKEMLI GYMLDFIRDE PLDSLASPIR WKALIAIRYL SKLKPQLSLQ bmy_06105T0/1-1549 FKFSYKEVLL GYMLDFIRDE PLDSLASPVR WKALIAIRYL SKLKPQLSLN ENSBTAP00000002589/1-1589 FKFSYKEVLL GYMLDFIRDE PLDSLASPIR WKALIAIRYL SKLKPQLSLN 851 900 ENSTTRP00000010385/1-1575 DHLNILEENI RKLLPLPPLE KLKNEGKTDT DTEHIHFLYE RSMDALGKLL ENSP00000382476/1-1585 DHLNILEENI RRLLPLPPLE NLKSEGQTDK DKEHIQFLYE RSMDALGKLL bmy_06105T0/1-1549 DHLNILEENI RKLLPLPPLE KLKNEGDTDK DKEHIHFLYE RSMDALGKLL ENSBTAP00000002589/1-1589 DHLNILEENI RRLLPLPPLE KLRNEGETDK DKEHIQFLYE RSMDALGKLL 901 950 ENSTTRP00000010385/1-1575 RTMM-CNVKA EDCQEMVNLL RMWLVSQKEW ERERAFQITA KVLTNDTEAP ENSP00000382476/1-1585 KTMMWDNVNA EDCQEMFNLL QMWLVSQKEW ERERAFQITA KVLTNDIEAP bmy_06105T0/1-1549 RTMMWENAKA EDCQEMFNLL RMWLVSQKEW ERERAFQITA KVLTNDIEAP ENSBTAP00000002589/1-1589 RTMMWDNMKA EDCQEMFNLL RMWLVSQKDW ERERAFQITA KVLTNDVEAP 951 1000 ENSTTRP00000010385/1-1575 ENFKIGSLLG LLVPHSCDTS PSIRQAAASS AISLFCIKGI RLEVERLQDL ENSP00000382476/1-1585 ENFKIGSLLG LLAPHSCDTL PTIRQAAASS TIGLFYIKGI HLEVERLQGL bmy_06105T0/1-1549 ENFKIGSLLG LLAPHSCDTL PSIRQAAASS AIGLFCIKGI RLEVERLQDL ENSBTAP00000002589/1-1589 ENFKIGSLLG LLAPHSCDTL PSIRQAAASS AIGLFSIKGV HLEVERLQDL 1001 1050 ENSTTRP00000010385/1-1575 QEGLQCDDVQ VQIKISSKIA KIVSRLIPSE EMLMFLGETL DSLESLNPTC ENSP00000382476/1-1585 QEGLESDDVQ VQIKISSKIA KIVSKFIPNE EILMFLEEML DGLESLNPTC bmy_06105T0/1-1549 QEGLQCDDVQ VQIKISSKIA KIVSRLIPSE EMLMFLGETL DGLESLNPTC ENSBTAP00000002589/1-1589 QEGLQCDDVQ VQIKISSKIA KIVSKLIPSE EMLVFLEETL DGLESLNPPC 1051 1100 ENSTTRP00000010385/1-1575 TKACGIWMIA ALKAQGAALE DQLLEILGII YHHMPVLRQK EXXXXXXXXX ENSP00000382476/1-1585 TKACGIWMIT VLKQQGAALE DQLLEILGTI YHHMPVLRQK EESFQFILEA bmy_06105T0/1-1549 TKACGVWMIA ALKEQGAALE DQLLEILGII YHHMPVLRQK EESFQFMLEA ENSBTAP00000002589/1-1589 TKACGVWMIT ALKEQGATLE DQLLEILGVI YHHMPVLRQK EESFQFMLEA 1101 1150 ENSTTRP00000010385/1-1575 XXQIASFHTD A-VANLLQKP LPFDSDTKTL WKALAENPAS SGKLLRAFID ENSP00000382476/1-1585 ISQIASFHMD TVVVNLLQKP LPFDRDTKTL WKALAEKPAS SGKLLQALID bmy_06105T0/1-1549 ISQIASFHMD GVVANLLQKP LPFDRDTKTL WKALAENPAS SGKLLRALID ENSBTAP00000002589/1-1589 ISQIASFHMD AVVANLLQKP LPFDRDTKTL WKSLAENPAS SGKLLRALVD 1151 1200 ENSTTRP00000010385/1-1575 KLENELEDDL LGTEAISVAC AICEGVSTGT XXXXXXXXXX XXXXXXXXXX ENSP00000382476/1-1585 KLETELEDDI ARVEAISVAC AMYEVISMGT SVTGLYPELF TLLLKLVSCT bmy_06105T0/1-1549 KLENELEDDL AGTEAISVAC AIYEVVSTGT PVAGLYPKLF ALFLKLVSCT ENSBTAP00000002589/1-1589 KLENELEDDL ARIEAISVAC AVYEVVLTGT PVSSLYPELF ALLLKLVSCT 1201 1250 ENSTTRP00000010385/1-1575 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LSTTTLKCVQ AQATKEGLAR ENSP00000382476/1-1585 LGQKMLTCPW SHRRHVMQQG EQQQIPDPCR LSTATLKCLQ AQAMREGLAK bmy_06105T0/1-1549 LGQKMPPSTL NRRRRVMQQG ERQQIADPCR LSTTTLKCVQ AQAMKEGLAK ENSBTAP00000002589/1-1589 LGQKMPTSAL SRRRRVMPQG ERQQIADPCR LSTTTLKCVQ AQAMREGLTK 1251 1300 ENSTTRP00000010385/1-1575 ESDNGDNMWT LFSSPSRHHI GVCALARSMA AWQHRLIPDI TEQLFPSLTS ENSP00000382476/1-1585 ESDEGDNLWT LLSSPSTHHI GVCSLARSMA VWQHGVILDI MEQLLSSLTS bmy_06105T0/1-1549 ESDEGDNMWA LLSSRSRHHI GVCALAR--- ---------- ---------- ENSBTAP00000002589/1-1589 ESDEGDNVWT LLSSPSTHHI GVCALARSMA VWQHGIIRDI TEQLLPSLTS 1301 1350 ENSTTRP00000010385/1-1575 SSENYRITGA ASFSELMKEP ILWKHGNLRD VLILMVQSAW GSNAILRQMA ENSP00000382476/1-1585 SSENYRITGA AFFSELMKEP ILWKHGNLRN VLILMDQSAW DSNATLRQMA bmy_06105T0/1-1549 --------GG VFRFQLMKEP LLWKHGNLRD VLILMGQSAW DSNAILRQMA ENSBTAP00000002589/1-1589 SSENYRITGT AFFSELMKEP VLWKHGNLRE VLVLMDQSAW DSNPILRQMA 1351 1400 ENSTTRP00000010385/1-1575 I-GLGNSASG APHKVKKRKQ IKLESIVRGL YHLARTEVVC ESLKALKKIL ENSP00000382476/1-1585 IRGLGNTASG APHKVKKHKQ LMLESIIRGL YHLARTEVVC ESLKALKKIL bmy_06105T0/1-1549 IRGLGNTASG APHKVKKHKQ IMLESIVRGL YHLARTEVVC ESLKALKKIL ENSBTAP00000002589/1-1589 IRGLGNTASG APHKVKKHKQ MMLESVIRGL YHLARTEVVC ESLKALKKIL 1401 1450 ENSTTRP00000010385/1-1575 ELLTDRDVSF YFKEIVLQTR TFFEDEQDDV RLTAVLLFEN LASLTGRRWK ENSP00000382476/1-1585 ELLTDRDVSF YFKEIVLQTR TFFEDEQDDV RLTAIFLFED LAPLTGRRWK bmy_06105T0/1-1549 ELLTDRXVSF YFKEIVLQTR TFFEDEQDDV RLTAVLLFEN LASLTGRRWK ENSBTAP00000002589/1-1589 DLLTDRDVSF YFKEIVLQTR TFFEDEQDDV RLTAILLFEN LASLTGRRWK 1451 1500 ENSTTRP00000010385/1-1575 IFFAEEIKKS MISFLLHLCN PNPRIRTACR DVLIICIPFL GLQELYGVLD ENSP00000382476/1-1585 IFFAEEIKKS LISFLLHLWD PNPKIGVACR DVLMVCIPFL GLQELYGVLD bmy_06105T0/1-1549 IFFAEEIKKS MISFLLHLWD PNPKMRTACR DVLIICIPFL GLQELCGVLD ENSBTAP00000002589/1-1589 IFFAEEIKKS MISFLLHLWD PNPKIGTACR DVLIICIPFL GLQELYGVLD 1501 1550 ENSTTRP00000010385/1-1575 HLLDGQDLPR ARDFY----- ---------- -RQFCVKLAK KNQEILWILH ENSP00000382476/1-1585 RLLD-QDLPR ARDFY----- ---------- -RQFCVKLAK KNQEILWILH bmy_06105T0/1-1549 HLLDGS--PK GQGFLQAILC EAGECAGGAA SKKMQAKSPG KSQKANSIAR ENSBTAP00000002589/1-1589 HLLDVQDLPR ARDFY----- ---------- -RQFCMKLSK RNQEILWILH 1551 1600 ENSTTRP00000010385/1-1575 THSFTFFSSS WELIRSVATK LTDAIVLNLT YQYVELIDRE QLTTRLQALQ ENSP00000382476/1-1585 THSFTFFTST WEVIRSAAVK LTDAVVLNLT SQYVELLDRE QLTTRLQALR bmy_06105T0/1-1549 NPS-----QS QNHLGSTAVI L-DAIVLNLT YQYVELIDRE QLTTRLQALR ENSBTAP00000002589/1-1589 THSFTFFSSS WETIRSAAIK LTDAIVLNLT YRYVELVDRE QLTTQLQALR 1601 1650 ENSTTRP00000010385/1-1575 KDPCMSVQRA AEAALQTLSR RCREMSNHP ENSP00000382476/1-1585 QDPCISVQRA AEAALQTLLR RCKETSIPL bmy_06105T0/1-1549 QDPCISVQRA AEAALQTLLR RCKEMSIHP ENSBTAP00000002589/1-1589 QDPCISVQRA AEAATQTLLR RCKEISVHL