KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:36 2014 Check: 00 .. Name: ENSBTAP00000002617/1-251 Len: 453 Check: 5032 Weight: 1.00 Name: ENSP00000372221/1-375 Len: 453 Check: 8542 Weight: 1.00 Name: ENSTTRP00000004891/1-375 Len: 453 Check: 316 Weight: 1.00 Name: bmy_17204T0/1-439 Len: 453 Check: 7045 Weight: 1.00 Name: BACU018986/1-377 Len: 453 Check: 6297 Weight: 1.00 // 1 50 ENSBTAP00000002617/1-251 ---------- ---------- ---------- -MEALRLANS AFAVDLYKQL ENSP00000372221/1-375 ---------- ---------- ---------- -MDALQLANS AFAVDLFKQL ENSTTRP00000004891/1-375 ---------- ---------- ---------- -MDALRLANS AFAVDLFKQL bmy_17204T0/1-439 SKQPASAPHQ GPTASGFPFP WPCDRCNFRP XMDALRLANS AFAVDLFKQL BACU018986/1-377 ---------- ---------- ---------- -MDALRLANS AFAVDLFKQL 51 100 ENSBTAP00000002617/1-251 CEKEPADNIL FSPICLSTSL SLAQVGAKGD TADEIGQVLH FENVKDVPFG ENSP00000372221/1-375 CEKEPLGNVL FSPICLSTSL SLAQVGAKGD TANEIGQVLH FENVKDVPFG ENSTTRP00000004891/1-375 CEKEPAGNVL FSPICLSTSL SLAQVGARGD TANEIGRVLH FENVKDVHFG bmy_17204T0/1-439 CEKEPAGNVL FSPICLSTSL SLVQVGAKGD TANEIGQVLH FENVKDVPFG BACU018986/1-377 CEKEPAGNVL FSPICLSTSL SLVQVGAKGD TANEIGQVLH LENVKDGPFG 101 150 ENSBTAP00000002617/1-251 FQTVTSDVNK LSSFYSLKLI KRLYVEKSLN LSTEFISSTK RPYAKEMETV ENSP00000372221/1-375 FQTVTSDVNK LSSFYSLKLI KRLYVDKSLN LSTEFISSTK RPYAKELETV ENSTTRP00000004891/1-375 FQTVTSDVNK LSSFYSLKLI KRLYVDKSLN LSTEFISSTK RPYANEMETV bmy_17204T0/1-439 FQTVTSDVNK LSSFYSLKLI KQLYVDKSLN LSTEFIRSTK RPYANEMETV BACU018986/1-377 FQTVTSDVNK LRSFYSLKLI KRLYVDKSLN PSTEFIRSTK RPYANEMETV 151 200 ENSBTAP00000002617/1-251 DFKDKLEETK GQINNSIKEL TD--GHFENI LADNSVNDQT KILVVNAAYF ENSP00000372221/1-375 DFKDKLEETK GQINNSIKDL TD--GHFENI LADNSVNDQT KILVVNAAYF ENSTTRP00000004891/1-375 DFKDKLEETK GQINNSVKEL TD--GRFENI LADNSVTDQT QILVVNAAYF bmy_17204T0/1-439 DFKDKLEETK ---------- ----GRFENI LADNSVTDQT KILVVNAAYF BACU018986/1-377 DFKDKLEETK GQINNSVKEL TDGKGRFENI LADNSVTDQT KILVVNAAYF 201 250 ENSBTAP00000002617/1-251 VGKWMKKFPE SETKECPFRI NQ-------- ---------- ---------- ENSP00000372221/1-375 VGKWMKKFSE SETKECPFRV NK-------- ---------- ---------- ENSTTRP00000004891/1-375 VGKWMKKFPE SETKECPFRI NK-------- ---------- ---------- bmy_17204T0/1-439 VGKWMKKFPE SETKEXPFRI NKKMSHLCSR DTRSDINGDT EEKKSPGMLP BACU018986/1-377 VGKWMKKFPE SETKECPFRI SK-------- ---------- ---------- 251 300 ENSBTAP00000002617/1-251 ---------- -------TDT KPVQMMNMEA TFCMGHIDGV NCKIIELPFQ ENSP00000372221/1-375 ---------- -------TDT KPVQMMNMEA TFCMGNIDSI NCKIIELPFQ ENSTTRP00000004891/1-375 ---------- -------TDT KPVQMMNVEA TFCMGHVDGI NCKLIELPFQ bmy_17204T0/1-439 GEKGLSDRSW KRLRDNFTDT KPVQMMHLEA TFCMGNVDGI NCKLIELPFQ BACU018986/1-377 ---------- -------TDT KPVQMMHLEA TFCMGNVDGI NCKLIELPFQ 301 350 ENSBTAP00000002617/1-251 NKHLSMLILL PKDVEDGPTG LEQA------ ---------- ---------- ENSP00000372221/1-375 NKHLSMFILL PKDVEDESTG LEKIEKQLNS ESLSQWTNPS TMANAKVKLS ENSTTRP00000004891/1-375 NKHLSMLVLL PKDMEHGSTG LEQVEKQLNS ETLLQWTNPS AMANAKVKVS bmy_17204T0/1-439 NKHLSMIILL PKDVEHGSTG LEQVEKQLNS ETLLQWTNPS TMANAKVKLS BACU018986/1-377 NKHLSMIILL PKDVEHGSTG LEQVEKQLNS ETLLQWTNPS TMANAKVKLS 351 400 ENSBTAP00000002617/1-251 ---------- ---------- ---------- ---------- ---------- ENSP00000372221/1-375 IPKFKVEKMI DPKACLENLG LKHIFSEDTS DFSGMSETKG VALSNVIHKV ENSTTRP00000004891/1-375 IPKFKMEKMI DPKASLENLG LKNIFNENAS DFSGMSETKG VALSNVIHRV bmy_17204T0/1-439 IPKFKVEKMI DPKASLENLG LKNIFNENAS DFSGMSETKG VALSNVIHRV BACU018986/1-377 IPKFKVEKMI DPKASLENLG LKNIFNENAS DFSGMSETKG VALSNVIHRV 401 450 ENSBTAP00000002617/1-251 ---------- ---------- ---------- ----VLRSA- ---------- ENSP00000372221/1-375 CLEITEDGGD SIEVPGARIL QHKDELNADH PFIYIIRHNK TRNIIFFGKF ENSTTRP00000004891/1-375 CLEITEEGGD SIEVPGSRIL QHKDEFNADH PFIYIIRHNK TRNIIFFGKF bmy_17204T0/1-439 CLEITEEGGD SIEVPGSRIL QHKDEFNADH PFIYIIRHNK TRNIIFFGKF BACU018986/1-377 CLEITEEGGD SIEVPGSRIL QHKDEFNADH PFIYIIRHNK TRNIIFFGKF 451 500 ENSBTAP00000002617/1-251 --- ENSP00000372221/1-375 CSP ENSTTRP00000004891/1-375 CSP bmy_17204T0/1-439 CSP BACU018986/1-377 CSP