KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:38 2014 Check: 00 .. Name: ENSP00000410759/1-861 Len: 971 Check: 3428 Weight: 1.00 Name: bmy_10586T0/1-574 Len: 971 Check: 7309 Weight: 1.00 Name: ENSBTAP00000002637/1-960 Len: 971 Check: 6555 Weight: 1.00 Name: ENSTTRP00000001397/1-834 Len: 971 Check: 6523 Weight: 1.00 Name: BACU006871/1-815 Len: 971 Check: 4121 Weight: 1.00 // 1 50 ENSP00000410759/1-861 MTSERSRIPC LSAAAAEGTG KKQQEGRAMA TLDRKVPSPE AFLGKPWSSW bmy_10586T0/1-574 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002637/1-960 MTSERSRIPC LSAAAAEGTG KKQQEGRAMA TLDRKVPSPE AFLGKPWSSW ENSTTRP00000001397/1-834 ---------- ---------- -KQQEGRAMA TLDRKVPSPE AFLGKPWSSW BACU006871/1-815 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000410759/1-861 IDAAKLHCSD NVDLEEAGKE GGKSREVMRL NKEDMHLFGH YPAHDDFYLV bmy_10586T0/1-574 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002637/1-960 IDAAKLHCSD NVDLEEAGKE GGKSREVMRL NKEDMHLFGH YPAHDDFYLV ENSTTRP00000001397/1-834 IDAAKLHCSD NVDLEEAGKE GGKSREVMRL NKEDMHLFGH YPAHDDFYLV BACU006871/1-815 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000410759/1-861 VCSACNQVVK PQVFQSHCER RHGSMCRPSP SPVSPASNPR TSLVQVKTKA bmy_10586T0/1-574 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002637/1-960 VCSACNQVVK PQVFQSHCER RHGSMCRPSP SPASPPSNSR TSLVQVKTKT ENSTTRP00000001397/1-834 VCSACNQVVK PQVFQSHCER RHGSMCRPSP SPASPPSNAR TSLVQVKTKA BACU006871/1-815 ---------- --VLSPPVER RHGSMCRPSP SPASPPSNAR TSLVQVKTKA 151 200 ENSP00000410759/1-861 CLSGHHSASS TSKPFKTPKD NLLTSSSKQH TVFPAKGSRD KPCVPVPVVS bmy_10586T0/1-574 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002637/1-960 CLSGHNSASS SSKPFKTPKD NLLTSSSKQH TIFSAKGSRD KPCVPVPVVS ENSTTRP00000001397/1-834 CLSGHTSASS SSKPFKTPKD NLLSSNSKQH TIFSAKGSRD KACVPVPVVS BACU006871/1-815 CLSGHTSASS SSKPFKTPKD NLLTSSSKQH TIFSAKGSRD KACVPVPVVS 201 250 ENSP00000410759/1-861 LEKIPNLVKA DGANVKMNST TTTAVSASST SSSAVSTPPL IKPVLMSKSV bmy_10586T0/1-574 ---------- ------MNST ATTAVT-CST SSSAVSTPPV IKPVLMSKSV ENSBTAP00000002637/1-960 LEKIPNLVKA DGANVKMNST TTPAVPSCST SSSAVSTPPV IKPVLMSKSV ENSTTRP00000001397/1-834 LEKIPNLVKA DGANVKMNSA TTTAVTFCST SSSAVSTPPV IKPVLMSKSV BACU006871/1-815 LEKIPNLVKA DGANVKMNSA TTTAAT-CST SSSAVSTPPV IKPVLMSKSV 251 300 ENSP00000410759/1-861 PPSPEKILNG KGILPTTIDK KHQNGTKNSN KPYRRLSERE FDPNKHCGVL bmy_10586T0/1-574 PPSPEKILNG KGILSATIDK KHQNGTKNNN KPYRRLSERE FDPNKHCGVL ENSBTAP00000002637/1-960 PPSPEKILNG KGILSTTIDK KHQNGTKNNS KPYRRLSERE FDPNKHCGVL ENSTTRP00000001397/1-834 PPSPEKILNG KGILSATIDK KHQNGTKNNN KPYRRLSERE FDPNKHCGVL BACU006871/1-815 PPSPEKILNG KGISSATIDK KHHNGTKNNN KPYRRLSERE FDPNKHCGVL 301 350 ENSP00000410759/1-861 DPETKKPCTR SLTCKTHSLS HRRAVPGRKK QFDLLLAEHK AKSREKEVKD bmy_10586T0/1-574 DPETKKPCTR SLTCK----- --------KS LFCLL----- ---------- ENSBTAP00000002637/1-960 DPETKKPCTR SLTCKTHSLS HRRAVPGRKK QFDLLLAEHK AKSREKEVKD ENSTTRP00000001397/1-834 DPETKKPCTR SLTCKTHSLS HRRAVPGRKK QFDLLLAEHK AKSREKEVKD BACU006871/1-815 DPETKKPCTR SLTCKTHSLS HRRAVPGRKK QFDLLLAEHK AKSREKEVKD 351 400 ENSP00000410759/1-861 KEHLLTSTRE ILPSQSGPAQ DSLLGSSGSS GPEPKVASPA KSRPPNSVLP bmy_10586T0/1-574 ---------- ---------- ---------- ---------- ------SLAL ENSBTAP00000002637/1-960 KEHLLTSARE VLPNPPGPAQ DSLPGPSGSS GPEPKVASPA KSRPPNSVLP ENSTTRP00000001397/1-834 KEHLLTSARE VLPNPSGPAQ DSLPGSSGSL GPEPKVASPA KSRPPNSVLP BACU006871/1-815 KEHLLTSTRE VLPNPSGPAQ DSLPGSSGSL GPEPKVASPA KSRPPNSVLP 401 450 ENSP00000410759/1-861 RPSSANSISS STSSNHSGHT PEPPLPPVGG DLASRLSSDE GEMDGADESE bmy_10586T0/1-574 RPSSANSISS STSSNHSGYT PEPPLPPAGG DLASRLSSDE GEMDGADESE ENSBTAP00000002637/1-960 RPSSANSISS STSSNHSGYT PEPPLPPVGG DLASRLSSDE GEMDGTDESE ENSTTRP00000001397/1-834 RPSSANSISS STSSNHSGYT PEPPLPPVGG DLASRLSSDE GEMDGADESE BACU006871/1-815 RPSSANSISS STSSNHSGYT PDPPLPPVGG DLASRLSSDE GEMDGADESE 451 500 ENSP00000410759/1-861 K-LDCQFSTH HPRPLAFCSF GSRLMGRGYY VFDRRWDRFR FALNSMVEKH bmy_10586T0/1-574 KLLDCHFSTH HPRPLAFCSF GSRLMGRGYY VFDRRWDRFR FALNSMVEKH ENSBTAP00000002637/1-960 KLLDCHFSTH HPRPLAFCSF GSRLMGRGYY VFDRRWDRFR VALNSMVEKH ENSTTRP00000001397/1-834 KLLDCHFSTH HPRPLAFCSF GSRLMGRGYY VFDRRWDRFR FALNSMVEKH BACU006871/1-815 KLLDCHFSTH HPRPLAFCSF GSRLMGRGYY VFDRRWDRFR FALNSMVEKH 501 550 ENSP00000410759/1-861 LNSQMWK--- ---------- ---------- ---------- ---------- bmy_10586T0/1-574 LNSQMWK--- ---------- ---------- ---------- ---------- ENSBTAP00000002637/1-960 LNSQMWKHRN PSHRASGPSP LFRTCLTNLL SLSNIGAAWV STLESVAPRC ENSTTRP00000001397/1-834 LNSQMWK--- ---------- ---------- ---------- ---------- BACU006871/1-815 LNSQMWKHRN PSHRASGPSP LFRTCLTNLL SLSNIGAAWV STLESVAPRC 551 600 ENSP00000410759/1-861 ---------- ---------- ---------- ---------- ---------- bmy_10586T0/1-574 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002637/1-960 PLNLAAQTPG PDGPEPGGMA ADGGVEDIRK KRNGQDSFFF NKHLTLHQET ENSTTRP00000001397/1-834 ---------- ---------- ---------- ---------- ---------- BACU006871/1-815 PLRLAAQTPG PDGPEPGGMA ADGGVEDIRK KRNGQDSFFF NKHLTLHQET 601 650 ENSP00000410759/1-861 ---------K IPPAADSPLP SPAAHITTPV PASVLQPFSN PSAVYLPSAP bmy_10586T0/1-574 ---------K IPPAADSPMP SPAAHITTPV PASVLQPFSN PSAVYLPSAP ENSBTAP00000002637/1-960 PTQYSLSARK IPPAADSPMP SPAAHLTTPV PASVLQPFSN PSAVYLPSAP ENSTTRP00000001397/1-834 ---------K IPPAADSPMP SPAAHITTPV PASVLQPFSN PSAVYLPSAP BACU006871/1-815 PAQYSLSARK IPPAADSPMP SPAAHITTPV PASVLQPFSN PSAVYLPSAP 651 700 ENSP00000410759/1-861 ISSRLTSSYI MTSAMLSNAA FVTSPDPSAL MSHTTAFPHV AATLSIMDST bmy_10586T0/1-574 ISSRLTSSYI MTSAMLSNAA FVTSPDPSAL MSHTTAFPHV AATLSIMDST ENSBTAP00000002637/1-960 ISSRLTSSYI MTSAMLSNAA FVTSPDPSAL MSHTTAFPHV AATLSIMDST ENSTTRP00000001397/1-834 ISSRLTSSYI MTSAMLSNAA FVTSPDPSAL MSHTTAFPHV AATLSIMDST BACU006871/1-815 ISSRLTSSYI MTSAMLSNAA FVTSPDPSAL MSHTTAFPHV AATLSIMDST 701 750 ENSP00000410759/1-861 FKAPSAVSPI PAVIPSPSHK PSKTKTSKSS KVKDLSTRSD ESPSNKKRKP bmy_10586T0/1-574 FKAPSAVSPI PAVIPSPSHK PSKTKTSKSS KVKDLSARSD ESPSNKKRKP ENSBTAP00000002637/1-960 FKAPPAVSPI PAVIASPSHK PSKTKTSKSS KVKDLSARSD ESPSNKKRKP ENSTTRP00000001397/1-834 FKAPSAVSPI PAVIPSPSHK PSKTKTSKSS KVKDLSAHSD ESPSNKKRKP BACU006871/1-815 FKAPSAVSPI PAVIPSPSHK PSKTKTSKSS KVKDLSARSD ESPSNKKRKP 751 800 ENSP00000410759/1-861 QSSTSS---S SSSSSSSLQT SLSSPLSGPH KKNCVLNASS ALNSYQAAPP bmy_10586T0/1-574 QSSTSASSSS SSSSSLSLQT SLSSPLSGPH KKNCVLNASS ALNSYQAAPP ENSBTAP00000002637/1-960 QSSTSS---- -SSSSLPLQT SLASPLSGPH KKNCVLNASS ALNSYQAAPP ENSTTRP00000001397/1-834 PSSTSA---- --SPSVSLQT SL-SPLSGPH KKNCVLNASS ALNSYQAAPP BACU006871/1-815 QSSTSA---S SSSSSLSLQT SLSSPLSGPH KKNCVLNASS ALNSYQAAPP 801 850 ENSP00000410759/1-861 YNSLSVHNSN NGVSPLSAKL EPSGRTSLPG GPADIVRQVG AVGGSSDSCP bmy_10586T0/1-574 YNSLSVHNSN NGVSPLSAKL EPSGRTSLPG GPTDLVRHMG SGGGSGDSCP ENSBTAP00000002637/1-960 YNSLSVHNSN NGVSPLSAKL EPSGRTSLPG GPTDLVRHVG SGGGSSDSCP ENSTTRP00000001397/1-834 YNSLSVHNSN NGVSPLSAKL EPSGRTSLPG GPTDLVRHMG SGGGSNDSCP BACU006871/1-815 YNSLSVHNSN NGVSPLSAKL EPSGRTSLPG GPTDLVRHMG SGGGSSDSCP 851 900 ENSP00000410759/1-861 LSVPSLALHA GDLSLASHNA VSSLPLSFDK SEGKKRKNSS SSSKACKITK bmy_10586T0/1-574 LSVPSL---A GDLSLASHNA VSSLPLSFDK SEGKKRKNSS SSSKACKITK ENSBTAP00000002637/1-960 LSVPTL---A GDLSLASHNA VSSLPLSFDK SEGKKRKNSS SSSKACKITK ENSTTRP00000001397/1-834 LSVPSL---A GDLSLASHNA VSSLPLSFDK SEGKKRKNSS SSSKACKITK BACU006871/1-815 LSVPSL---A GDLSLASHNA VSSLPLSFDK SEGKKRKNSS SSSKACKITK 901 950 ENSP00000410759/1-861 MPGMNSVHKK NPPSLLAPVP DPVNSTSSRQ VGKNSSLALS QSSPSSISSP bmy_10586T0/1-574 MPGMNSVHRK NPPSLLAPVP DPVNSTSSRQ METRVPHNGR RASEVPCSLP ENSBTAP00000002637/1-960 MPGMNSVHRK NPPSLLAPVP DPVNSTSSRQ VGKNSSLALS QSSPSSISSP ENSTTRP00000001397/1-834 MPGMNSVHRK NPPSLLAPVP DPVNSTSSRQ VGKNSSLALS QSSPSSISSP BACU006871/1-815 MPGMNSVHRK NPPSLLAPVP DPVNSTSSRQ VIEE------ ---------- 951 1000 ENSP00000410759/1-861 GHSR-QNTNR TGRIRTLP-- - bmy_10586T0/1-574 LSPG-DSWYR WVSPKLAPVS E ENSBTAP00000002637/1-960 GHSRPKNTNR TGRIRTLP-- - ENSTTRP00000001397/1-834 GHSR-QTTNR TGRIRTLP-- - BACU006871/1-815 ---------- ---------- -