KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:40 2014 Check: 00 .. Name: BACU001189/1-660 Len: 674 Check: 7895 Weight: 1.00 Name: ENSTTRP00000008551/1-593 Len: 674 Check: 3260 Weight: 1.00 Name: bmy_05719T0/1-337 Len: 674 Check: 4441 Weight: 1.00 Name: ENSP00000340944/1-593 Len: 674 Check: 2297 Weight: 1.00 Name: ENSBTAP00000002653/1-597 Len: 674 Check: 7022 Weight: 1.00 // 1 50 BACU001189/1-660 ----MTSRRW FHPNLGGVEA EQLLRSKGQH GSFLARPSKS RPGGFTLSVR ENSTTRP00000008551/1-593 --------RW FHPNITGVEA ENLLLTRGVD GSFLARPSKS NPGDFTLSVR bmy_05719T0/1-337 ---------- ---------- ---------- ---------- ---------- ENSP00000340944/1-593 ----MTSRRW FHPNITGVEA ENLLLTRGVD GSFLARPSKS NPGDFTLSVR ENSBTAP00000002653/1-597 MLLFCLKTLW FHPNITGVEA ENLLLTRGVD GSFLARPSKS NPGDFTLSVR 51 100 BACU001189/1-660 RHDEVTHIKI QNTGDYYDLY GGEKFATLAE LVQHYTGQRG GLLRERGGAP ENSTTRP00000008551/1-593 RNGAVTHIKI QNTGDYYDLY GGEKFATLAE LVQYYMEHHG Q-LKEKNGDV bmy_05719T0/1-337 ---------- ---------- ---------- ---------- ---------- ENSP00000340944/1-593 RNGAVTHIKI QNTGDYYDLY GGEKFATLAE LVQYYMEHHG Q-LKEKNGDV ENSBTAP00000002653/1-597 RNGAVTHIKI QNTGDYYDLY GGEKFATLAE LVQYYMEHHG Q-LKEKNGDV 101 150 BACU001189/1-660 VELLHPLSCQ DPTSERWYHG HLSGKEAEKL LMQKGRPGSF LVRESQSKPG ENSTTRP00000008551/1-593 IELKYPLNCA DPTSEXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05719T0/1-337 ---------- ----MKW--- ---------- ---------- ---------- ENSP00000340944/1-593 IELKYPLNCA DPTSERWFHG HLSGKEAEKL LTEKGKHGSF LVRESQSHPG ENSBTAP00000002653/1-597 IELKYPLNCA DPTSERWFHG HLSGKEAEKL LTEKGKHGSF LVRESQSHPG 151 200 BACU001189/1-660 DFVLSALT-- QQLDRAGRQA RVTHVMIHFQ PDGKYDVGGG ERFDTLGDLV ENSTTRP00000008551/1-593 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX -ELKYDVGGG ERFDSLTDLV bmy_05719T0/1-337 ---------- ---------- ---------- ---KYNRAA- ---------- ENSP00000340944/1-593 DFVLSVRTGD DKGESNDGKS KVTHVMIRCQ -ELKYDVGGG ERFDSLTDLV ENSBTAP00000002653/1-597 DFVLSVRTGD DKGESNDAKS KVTHVMIRCQ -ELKYDVGGG ERFDSLTDLV 201 250 BACU001189/1-660 ECYRKNPLVE RSGTVVHLQQ PLKTTRISAT SIESRVRELN EAMDASEKAK ENSTTRP00000008551/1-593 EHYKKNPMVE TLGTVLQLKQ XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05719T0/1-337 ---------- ---------- ---------- ---------- ---------- ENSP00000340944/1-593 EHYKKNPMVE TLGTVLQLKQ PLNTTRINAA EIESRVRELS KLAETTDKVK ENSBTAP00000002653/1-597 EHYKKNPMVE TLGTVLQLKQ PLNTTRINAA EIESRVRELS KLAETTDKVK 251 300 BACU001189/1-660 QGFWEEFEML QQQECRLLYP RKEGQRPENK PKNRYRNILP FDTTRVILRD ENSTTRP00000008551/1-593 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XDHTRVVLHD bmy_05719T0/1-337 ---------- ---------- ---------- -------VLR IDHTRVVLHD ENSP00000340944/1-593 QGFWEEFETL QQQECKLLYS RKEGQRQENK NKNRYKNILP FDHTRVVLHD ENSBTAP00000002653/1-597 QGFWEEFETL QQQECKLLYS RKEGQRQENK NKNRYKNILP FDHTRVVLHD 301 350 BACU001189/1-660 VEDSAPGADY INANYIRSDP EEKPGHG-PG KVYIATQGCL PTTVAAFWAM ENSTTRP00000008551/1-593 GDPNEPVSDY INANIIMPEF ETKCNNSKPK KSYIATQGCL QNTVNDFWRM bmy_05719T0/1-337 GDPNEPVSDY INANIIMPEF ETKCNNSKPK KSYIATQGCL QNTVNDFWRM ENSP00000340944/1-593 GDPNEPVSDY INANIIMPEF ETKCNNSKPK KSYIATQGCL QNTVNDFWRM ENSBTAP00000002653/1-597 GDPNEPVSDY INANIIMPEF ETKCNNSKPK KSYIATQGCL QNTVNDFWRM 351 400 BACU001189/1-660 VRQEDTRVVV MTTREVERGR NKCFRYWPEL HGSQEYGRLR VCNVAEHQAQ ENSTTRP00000008551/1-593 VFQENSRVIV MTTKEVERGK SKCVKYWPDE YALKEYGVMR VRNVKESAAH bmy_05719T0/1-337 VFQENSRVIV MTTKEVERGK SKCVKYWPDE YALKEYGVMR VRNVKESAAH ENSP00000340944/1-593 VFQENSRVIV MTTKEVERGK SKCVKYWPDE YALKEYGVMR VRNVKESAAH ENSBTAP00000002653/1-597 VFQENSRVIV MTTKEVERGK SKCVKYWPDE YALKEYGVMR VRNVKESAAH 401 450 BACU001189/1-660 GYCVRELQVW RAD----QEE SPRTVKHCQY FGWPDHGVPA APTGVLGFLD ENSTTRP00000008551/1-593 DYTLRELKLS KVGQALLQGN TERTVWQYHF RTWPDHGVPS DPGGVLDFLE bmy_05719T0/1-337 DYTLRELKLS KVG----QGN TERTVWQYHF RTWPDHGVPS DPGGVLDFLE ENSP00000340944/1-593 DYTLRELKLS KVG----QGN TERTVWQYHF RTWPDHGVPS DPGGVLDFLE ENSBTAP00000002653/1-597 DYTLRELKLS KVG----QGN TERTVWQYHF RTWPDHGVPS DPGGVLDFLE 451 500 BACU001189/1-660 EVNRAQSSMP GAGPMVVHCS AGIGRTGTII VLDILVDVIR RQGLDCDIDV ENSTTRP00000008551/1-593 EVHHKQESIT DAGPVVVHCS AGIGRTGTFI VIDILIDIIR EKGVDCDIDV bmy_05719T0/1-337 EVHHKQESIM DAGPVVVHCS AGIGRTGTFI VIDILIDIIR EKGVDCDIDV ENSP00000340944/1-593 EVHHKQESIM DAGPVVVHCS AGIGRTGTFI VIDILIDIIR EKGVDCDIDV ENSBTAP00000002653/1-597 EVHHKQESIV DAGPVVVHCS AGIGRTGTFI VIDILIDIIR EKGVDCDIDV 501 550 BACU001189/1-660 PKTIQHVRRQ RSGMVQTEAQ YKFVYLALQR YIRGEQLRLR EQVGAGPGRG ENSTTRP00000008551/1-593 PKTIQMVRSQ RSGMVQTEAQ YRFIYMAVQH YIETLQRRIE E--------- bmy_05719T0/1-337 PKTIQMVRSQ RSGMVQTEAQ YRFIYMAVQH YIETLQRRIE E--------- ENSP00000340944/1-593 PKTIQMVRSQ RSGMVQTEAQ YRFIYMAVQH YIETLQRRIE E--------- ENSBTAP00000002653/1-597 PKTIQMVRSQ RSGMVQTEAQ YRFIYMAVQH YIETLQRRIE E--------- 551 600 BACU001189/1-660 GTCGGITMVT SGPSPQREPP EERDSLKXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000008551/1-593 ---------- ---------- EQKSKRKGHE YTNIKYSLT- ---------- bmy_05719T0/1-337 ---------- ---------- EQKSKRKGHE YTNIKYSLT- ---------- ENSP00000340944/1-593 ---------- ---------- EQKSKRKGHE YTNIKYSLA- ---------- ENSBTAP00000002653/1-597 ---------- ---------- EQKSKRKGHE YTNIKYSLT- ---------- 601 650 BACU001189/1-660 XRGEGAGSQV APSRSPSPPA APRRPPATCT RTCCHSGREG PECARPEWGW ENSTTRP00000008551/1-593 -------DQA TGDQSPLPPC TPTPS----- ---CAEMRED NARVYENVGL bmy_05719T0/1-337 -------DQA SGDQSPLPPC TPTPS----- ---CAEMRED NARVYENVGL ENSP00000340944/1-593 -------DQT SGDQSPLPPC TPTPP----- ---CAEMRED SARVYENVGL ENSBTAP00000002653/1-597 -------DQA SGDQSPLPPC TPTPS----- ---CAEMRED NARVYENVGL 651 700 BACU001189/1-660 SRARRREPSK AGPRVPPKDC V--- ENSTTRP00000008551/1-593 MQQQKS---- ---------- --FR bmy_05719T0/1-337 MQQQKNVDFH PLPEKIKNDA RKFT ENSP00000340944/1-593 MQQQKS---- ---------- --FR ENSBTAP00000002653/1-597 MQQQKS---- ---------- --FR