KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:18:43 2014 Check: 00 .. Name: ENSP00000262209/1-1119 Len: 1128 Check: 96 Weight: 1.00 Name: bmy_02170T0/1-737 Len: 1128 Check: 5518 Weight: 1.00 Name: ENSBTAP00000002668/1-1126 Len: 1128 Check: 6427 Weight: 1.00 Name: BACU011139/1-1027 Len: 1128 Check: 2805 Weight: 1.00 // 1 50 ENSP00000262209/1-1119 MKRSLRKMWR PGEKKEPQGV VY---EDVPD DTEDFKESLK VVFEGSAYGL bmy_02170T0/1-737 ---------- ---------- ---------- ---------- --------ML ENSBTAP00000002668/1-1126 MRRSLRKMLR PGEKKEPRDF VCLGVEDHKD NSNDFKTKLN VVFEGNKCGL BACU011139/1-1027 -------MLR PGEKKERRGV VYLGVEDHMD DSKDFK---- VVFEGSACGL 51 100 ENSP00000262209/1-1119 QNF-NKQKKL KRCDDMDTFF LHYAAAEGQI ELMEKITRDS SLEVLHEMDD bmy_02170T0/1-737 QKKVKRSSLL Q--------- -WHLA----- --LSFAVNRR AVGILNVMDD ENSBTAP00000002668/1-1126 QNFVKKQKRF KKYDDVNASP LHHAAEEGQV ELMEMIVNES SCEVLNVMDD BACU011139/1-1027 QNSVKKQKRL KNCDDVNASP LHHAAEEGQV GLMEMIVNES SCEVLNVMDD 101 150 ENSP00000262209/1-1119 YGNTPLHCAV EKNQIESVKF LLSRGANPNL RNFNMMAPLH IAVQGMNNEV bmy_02170T0/1-737 YGNTPLHWAA EKNQVESVKF LLRKGANPNL RNCDMMAPLH VAVWGLXNDV ENSBTAP00000002668/1-1126 YGNTPLHWAA GKNQVESVKF LLRKGANPNL RNCSMMAPLH VAVQGGYNDV BACU011139/1-1027 YGNTPLHWAA EKNQVESVKF LLRKGANPNL RNCDMMAPLH VAVQGLYNNV 151 200 ENSP00000262209/1-1119 MKVLLEHRTI DVNLEGENGN TAVIIACTTN NSEALQILLK KGAKPCKSNK bmy_02170T0/1-737 MKLKCKH--- ---------- ---------- ---MLQFYQR LAAKEKASS- ENSBTAP00000002668/1-1126 MKVLIEHSST DVNLEGENGN TALIITCFTD NSEAMQLLLN KGAKPCKSNK BACU011139/1-1027 MKVLIEHRTT DVNLEGENGN TALIIACFTD NSEAVQLLLN KGAKPCKSNK 201 250 ENSP00000262209/1-1119 WGCFPIHQAA FSGSKECMEI ILRFGEEHGY SRQLHINFMN NGKATPLHLA bmy_02170T0/1-737 ---------- ---------- -----EEHGH SRLSHINFLN NGKASPLHMA ENSBTAP00000002668/1-1126 WGCFPIHQAA FSGAKKCMEI ILKFGEEHGY SRLSHINFVN SGKASPLHMA BACU011139/1-1027 WGCFPIHQAA FSGAKKCMEI ILKFGEEHGH SRLSHINFLN NGKASPLHMA 251 300 ENSP00000262209/1-1119 VQNGDLEMIK MCLDNGAQID PVEKGRCTAI HFAATQGATE IVKLMISSYS bmy_02170T0/1-737 VQSGDLEMIK MCLDKGAQLD LME------- ---------- ---------- ENSBTAP00000002668/1-1126 VQSGDLDMIK MCLDNGAQLD LLEKGKCTAL HFAATQGATE IVKLMVSSYS BACU011139/1-1027 VQSGDLEMIK MCLDSGAELD LMEKGKCTAL HFAATQGATE IVKLMISSYS 301 350 ENSP00000262209/1-1119 GSVDIVNTTD GCHETMLHRA SLFDHHELAD YLISVGADIN KIDSEGRSPL bmy_02170T0/1-737 ---------- ---------- ---------- -----GADID ITDSEGRSPL ENSBTAP00000002668/1-1126 GNSDIVNEVD GNHETLLHRA SLFDHHELAD YLISVGADID ITDSEGRSPL BACU011139/1-1027 GSSDIVNQVD GNHETLLH-- ---------- -----GADID ITDSEGRSPL 351 400 ENSP00000262209/1-1119 ILATASASWN IVNLLLSKGA QVDIKDNFGR NFLHLTVQQP YGLKNLRPEF bmy_02170T0/1-737 XLATASASWN TVDLLLSKGA RVDIKDNLGR NFLHLTVQQP YGLKNLRPEF ENSBTAP00000002668/1-1126 LLATASASWN TVNLLLSKGA RVDIKDNLGR NFLHLTVQQP YGLKNLHPEF BACU011139/1-1027 ILATASASWN TVNLLLSKGA RVDIKDNLGR NFLHLTVQQP YGLKNLPPEF 401 450 ENSP00000262209/1-1119 MQMQQIKELV MDEDNDGCTP LHYACRQGGP GSVNNLLGFN VSIHSKSKDK bmy_02170T0/1-737 LQMHRIKELV MDEDNDGCTP LHYACRQGVP VSVNNLLDFN VSIHSKSKDK ENSBTAP00000002668/1-1126 LQMQHIKELV MDEDNDGCTP LHYACRQGVP VSVNNLLNFN VSIHSKSKDK BACU011139/1-1027 LQMHHIKELV MDEDNDGCTP LHYACRQGVP VSVNNLLDFN VSIHSKSKDK 451 500 ENSP00000262209/1-1119 KSPLHFAASY GRINTCQRLL QDISDTRLLN EGDLHGMTPL HLAAKNGHDK bmy_02170T0/1-737 KSPLHFAASY GRINTCQRLL QDMSDTRLLN EGDLHGMTPL HLAAKNGHDK ENSBTAP00000002668/1-1126 KSPLHFAASY GRINTCQRLL QDISDTRLLN EGDLHGMTPL HLAAKNGHDK BACU011139/1-1027 KSPLHFAASY GRINTCQRLL QDMSDTRLLN EGDLHGMTPL HLAAKNGHDK 501 550 ENSP00000262209/1-1119 VVQLLLKKGA LFLSDHNGWT ALHHASMGGY TQTMKVILDT NLKCTDRLDE bmy_02170T0/1-737 VVQLLLKKGA LFLSDHNGWT ALHHASLGGY TQTMKVILDT NMKCTDRLDE ENSBTAP00000002668/1-1126 VVQLLLKKGA LFLSDHNGWT ALHHASLGGY TQTMKVILDT NLKCTDRLDE BACU011139/1-1027 VVQLLLKKGA LFLSDHNGWT ALHHASLGGY TQTMKVILDT NMKCTDRLDE 551 600 ENSP00000262209/1-1119 DGNTALHFAA REGHAKAVAL LLSHNADIVL NKQQASFLHL ALHNKRKEVV bmy_02170T0/1-737 EGNTALHFAA REGHAKAVAL LLRYDADIVL NKQQASFLHT AIHNKRKEVV ENSBTAP00000002668/1-1126 EGNTALHFAA REGHAKAVSL LLSYDADVVL NKQQASFLHV AIHNKRKEVV BACU011139/1-1027 EGNTALHFAA REGHAKAVAL LLRYDADIVL NKQQASFLHT AIHNKRKEVV 601 650 ENSP00000262209/1-1119 LTIIRSKRWD ECLKIFSHNS PGNKCPITEM IEYLPECMKV LLDFCMLHST bmy_02170T0/1-737 LTTVRDK--- SCLR------ -----NIKNN VTRVPESQKM ---------- ENSBTAP00000002668/1-1126 LTTIRSKRWG ECFKVFNHCS PTNRCPVIEL VEYLPECMKV LLDFCVMPST BACU011139/1-1027 LTTVRNKRWE ECLKVFSHYS PSNRCPILEM VEYLPECMKV LLDFCMMPST 651 700 ENSP00000262209/1-1119 EDKSCRDYYI EYNFKYLQCP LEFTKK-TPT QDVIYEPLTA LNAMVQNNRI bmy_02170T0/1-737 ---------I EYNFRYLQCP LEFTEKVAAV QDVTYEPLST LN-------- ENSBTAP00000002668/1-1126 EDKSSQDYHI EYNFTYLQCP LEFTKKGTPV PDIVYEPLLT LNAMVQHNRI BACU011139/1-1027 EDKSSQDYHI EYNFRYLQCP LEFTEKVAPV QDVTYEPLST LNAMVQHNRI 701 750 ENSP00000262209/1-1119 ELLNHPVCKE YLLMKWLAYG FRAHMMNLGS YCLGLIPMTI LVVNIKPGMA bmy_02170T0/1-737 ---------- ---------- --------NS YTINI----- ---------- ENSBTAP00000002668/1-1126 ELLNHPVCKE YLLMKWLAYG FRAHVLNLGS YCLGLFPMTF LVVSIRPGMA BACU011139/1-1027 ELLNHPVCKE YLLMKWLAYG FRAHVMNLGS YCLGLLPMTF LVVSIRPGMA 751 800 ENSP00000262209/1-1119 FNSTGIINET SDHSEILDTT NSYLIKTCMI LVFLSSIFGY CKEAGQIFQQ bmy_02170T0/1-737 ---------- ---------- -------CMI LVLLSSIFGY CKEVAQIFQQ ENSBTAP00000002668/1-1126 FNSTGIINET SDHSEILDTK NSFAINFCMI LVLLSSILGY CKEVAQIFQQ BACU011139/1-1027 FNSTGIINET SDHSEILDTK ---------- ---------- ---------- 801 850 ENSP00000262209/1-1119 ---KRNYFMD ISNVLEWIIY TTGIIFVLPL FVEIPAHLQW QCGAIAVYFY bmy_02170T0/1-737 ---KRNYFLD NNNAVEWIIY TTSIIFVSPL FVSIPAYVQW QCGAIAIYLY ENSBTAP00000002668/1-1126 QPQKRNYFLD KDNAAEWIIY TTSIIFVSPL FIRIPAYVQW QCGAVAIFLY BACU011139/1-1027 ---KRNYFLD NNNAVEWIIY TTSIIFVSPL FVSIPAYVQW QCGAIAIYLY 851 900 ENSP00000262209/1-1119 WMNFLLYLQR FENCGIFIVM LEVILKTLLR STVVFIFLLL AFGLSFYILL bmy_02170T0/1-737 WMNFLLYLQR FENCGIFIVM LEVIMKTLLK STVVFVFLLV AFGLSFYVLL ENSBTAP00000002668/1-1126 WMNFLLYLQR FEKCGIFIVM LEVIMKTLLK STIVFVFLLV AFGLCFYVLL BACU011139/1-1027 WMNFLLYLQR FENCGIFIVM LEVIMKTLLK STVVFVFLLV AFGLSFYVLL 901 950 ENSP00000262209/1-1119 NLQDPFSSPL LSIIQTFSMM LGDINYRESF LEPYLRNELA HPVLSFAQLV bmy_02170T0/1-737 SIQ------- ---------- ---------- ---------- ---------- ENSBTAP00000002668/1-1126 NIQDAFSSPF LSIIQTFSMM LGDINYHDAF LEPYLKNELE YPLLSFVHLI BACU011139/1-1027 SIQDAFSSPL LSIMQTFSMM LGDINYHDAF LEPYLRNELA YPLLSFAHLI 951 1000 ENSP00000262209/1-1119 SFTIFVPIVL MNLLIGLAVG DIAEVQKHAS LKRIAMQVEL HTSLEKKLPL bmy_02170T0/1-737 ---------- ----IGLAVG DIAEVQKHAL LKRIAMQVEL HTSLEKKLPL ENSBTAP00000002668/1-1126 IFTMFVPIVL MNLLIGLAVG DIAEVQKHAL LKRIAMQVEL HTSLEKKLPL BACU011139/1-1027 VFTMFVPIVL MNLLIGLAVG DIAEVQKHAL LKRTAMQ--- ---------- 1001 1050 ENSP00000262209/1-1119 WFLRKVDQKS TIVYPNKPRS G-GMLFHIFC FLFCTGEIRQ EIPNADKSLE bmy_02170T0/1-737 WFLHKVDQKS TVVYPNRPRY GEGL------ ---------- ---------- ENSBTAP00000002668/1-1126 WFLHKVDQKS IIVYPNRPRY SRGILRGVFH YIFCPHETRQ EIPNVDTSLE BACU011139/1-1027 ---------- ---------- -----RGVFH YFFCTQEVRQ EIPNVDTSLE 1051 1100 ENSP00000262209/1-1119 MEILKQKYRL KDLTFLLEKQ HELIKLIIQK MEIISETEDD DSHCSFQDRF bmy_02170T0/1-737 ---------L KDLSSLLEKQ HELIKLITQK MEIISETEDE DYHSSFQDRF ENSBTAP00000002668/1-1126 TEIMKQKYRL KDLSSLLEKQ HELIKLIIQK MEIISETEDE DYHSSFQDRF BACU011139/1-1027 TEIMKQKYRL KDLSSLLEKQ HELIKLITQK MEIVSETEDE DYHSSFQDRF 1101 1150 ENSP00000262209/1-1119 KKEQMEQRNS RWNTVLRAVK AKTHHLEP bmy_02170T0/1-737 KKQQLEQRNS KWNSVRRAVK AKPH--SP ENSBTAP00000002668/1-1126 KKQQLEQRNS KWNCVLRAVK AKTH--SP BACU011139/1-1027 KKQQLEQRNS KWNSVRRAVK AKPH--SP