KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:45 2014 Check: 00 .. Name: ENSTTRP00000007861/1-772 Len: 1691 Check: 6658 Weight: 1.00 Name: ENSP00000375809/1-760 Len: 1691 Check: 2896 Weight: 1.00 Name: ENSBTAP00000002680/1-759 Len: 1691 Check: 5746 Weight: 1.00 Name: bmy_15594T0/1-838 Len: 1691 Check: 5953 Weight: 1.00 Name: BACU002110/1-1584 Len: 1691 Check: 4764 Weight: 1.00 // 1 50 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 MDSEAFQSSR NLLDLNLQSL ATKHMDLKQV ELDMATAKVD ELTKQLESLW 51 100 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 SDSPAAPLGS QARAPARLSR YSLSPVPEPL GSRGSPWKAI TDGADTSFRR 101 150 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 AESAPAQLPY SSLSPKGRPS SPRTQLYLQP DAYGSPDRAP SPRPRAFDGA 151 200 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 GSPLGRAPSP RPGPLRQQGP PTPFDFLGRV RSPRVSPLAE GPQAFFPERG 201 250 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- --------SV RRQ------- BACU002110/1-1584 PSPRAPTAAY DAPTAFGSPL LGPGLRAFAP PLRAQDDLTL RRRSPKAWNE 251 300 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 SDLDVAYEKK SSQTASYERP DVFARPASPG LQLLPWRESS LDGLGATRKD 301 350 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 NFTSATLPRN YKVFPLANDR RSDVDSYRRS LGSAGSSGTL PRSWQPVSPF 351 400 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 PMPPSSPQPR SAPRQRPIPL SMIFKLQNAF WEHGASRAML PGSPIFSRAP 401 450 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 PPKLLLQPQL PPQSQPQLQL QALAPVPQPP QETWSPVSEG LPKPPTELEP 451 500 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 EPELEGLLTS GLEAGDADED AVTRPLSPTR LQPALPPEAQ SVPELEEVAR 501 550 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 VLAEIPRPLK RRGSMEQSPI VALPPTHKKQ YQQIINRLFH RHGGPGRPEP 551 600 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 ELCPIAEGPE ARAGPPAPAP PAPIPPLALL QSSPPEQPQS MEMRSVLRKA 601 650 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 GSPRKVRRAR LSPLVLLLDA ALTGELDVVQ QAVKEMNDPS QPNEEGITAL 651 700 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 HNAICGANYP IVDFLIAAGA NRGLSRLPPT PRTPLHCAAS CNDTAICMAL 701 750 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 VQHGAAIFAT TLSDGATAIE KCDPYREGYT DCATYLADVE QSMGLMYNGV 751 800 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- ---------- ENSP00000375809/1-760 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- ---------- bmy_15594T0/1-838 ---------- ---------- ---------- ---------- ---------- BACU002110/1-1584 VYALWDYSAE FGDELSFRDG ESVTVLRRDG PEETDWWWAT LHGQEGYVPR 801 850 ENSTTRP00000007861/1-772 ----GGQTPL QAATG----- ---AMKLNVD GLLVYFPYDY IYPEQFSYML ENSP00000375809/1-760 ---------- ---------- ----MKLNVD GLLVYFPYDY IYPEQFSYMR ENSBTAP00000002680/1-759 ---------- ---------- -----RLNVD GLLVYFPYDY IYPEQFSYML bmy_15594T0/1-838 ----GSVEAG EGLRGRGTDL AAPAARLNVD GLLVYFPYDY IYPEQFSYML BACU002110/1-1584 NYFGGSVEAG EGLRGRGADP AAPAARLNVD GLLVYFPYDY IYPEQFSYML 851 900 ENSTTRP00000007861/1-772 ELKRTLDAKX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000375809/1-760 ELKRTLDAKG HGVLEMPSGT GKTVSLLALI MAYQRAYPLE VTKLIYCSRT ENSBTAP00000002680/1-759 ELKRTLDAKG HGVLEMPSGT GKTVSLLALI MAYQRAYPLE VTKLIYCSRT bmy_15594T0/1-838 ELKRTLDAKG HGVLEMPSGT GKTVSLLALI MAYQR----- ---------- BACU002110/1-1584 ELKRTLDAKG HGVLEMPSGT GKTVSLLALI MAYQRAYPLE VTKLIYCSRT 901 950 ENSTTRP00000007861/1-772 XXXXXXVIEE LRKLLNFYEK QEGEKLSFLG LALSSRKNLC IHPEVTPLRF ENSP00000375809/1-760 VPEIEKVIEE LRKLLNFYEK QEGEKLPFLG LALSSRKNLC IHPEVTPLRF ENSBTAP00000002680/1-759 VPEIEKVIEE LRKLLSFYEK QEGEKLPFLG LALSSRKNLC IHPEVTPLRF bmy_15594T0/1-838 ------VIEE LRKLLNFYEK QEGEKLSFLG LALSSRKNLC IHPEVTPLRF BACU002110/1-1584 VPEIEKVIEE LRKLLNFYEK QEGEKLSFLG LALSSRKNLC IHPEVTPLRF 951 1000 ENSTTRP00000007861/1-772 GKDVDGKCHS LTASYIRAQY QRDPSLPHCR FYEEFDVHGR QVPLPAGIYN ENSP00000375809/1-760 GKDVDGKCHS LTASYVRAQY QHDTSLPHCR FYEEFDAHGR EVPLPAGIYN ENSBTAP00000002680/1-759 GKDVDGKCHS LTASYVRAQY QRDSSLPHCR FYEEFDVHGR QVPLPTGIYN bmy_15594T0/1-838 GKDVDGKCHS LTASYIRAQY QRDPSLPHCR FYEEFDVHGR QVPLPAGIYN BACU002110/1-1584 GKDVDGKCHS LTASYIRAQY QRDPSLPHCR FYEEFDVHGR QVPLPAGIYN 1001 1050 ENSTTRP00000007861/1-772 LDDLKAMGRR QGWCPYFLAR YSILHANVVV YSYHYLLDPK IADLVSKELA ENSP00000375809/1-760 LDDLKALGRR QGWCPYFLAR YSILHANVVV YSYHYLLDPK IADLVSKELA ENSBTAP00000002680/1-759 LDDLKAVGRR QGWCPYFLAR YSILHANVVV YSYHYLLDPK IADLVSKELA bmy_15594T0/1-838 LDDLKAVGQR QGWCPYFLAR YSILHANVVV YSYHYLLDPK IADLVSKELA BACU002110/1-1584 LDDLKAVGQR QGWCPYFLAR YSILHANVVV YSYHYLLDPK IADLVSKELA 1051 1100 ENSTTRP00000007861/1-772 RKAVVVFDEA HNIDNVCIDS MSVNLTRRTL DRCQGNLETL QKTVLRIKET ENSP00000375809/1-760 RKAVVVFDEA HNIDNVCIDS MSVNLTRRTL DRCQGNLETL QKTVLRIKET ENSBTAP00000002680/1-759 RKAVVVFDEA HNIDNVCIDS MSVNLTRRTL DRCQANLETL QKTVLRIKET bmy_15594T0/1-838 RKAVVVFDEA HNIDNVCIDS MSVNLTRRTL DRCQGNLETL QKTVLRIKET BACU002110/1-1584 RKAVVVFDEA HNIDNVCIDS MSVNLTRRTL DRCQGNLETL QKTVLRIKET 1101 1150 ENSTTRP00000007861/1-772 DEQRLRDEYR RLVEGLREAS TARETDAHLA NPVLPDEVLK EAVPGSIRTA ENSP00000375809/1-760 DEQRLRDEYR RLVEGLREAS AARETDAHLA NPVLPDEVLQ EAVPGSIRTA ENSBTAP00000002680/1-759 DEQRLREEYR RLVEGLREAS AARETDAHLA NPVLPDEVLK EAVPGSIRTA bmy_15594T0/1-838 DEQRLRDEYR RLVEGLREAS AARETDAHLA NPVLPDEVLQ EAVPGSIRTA BACU002110/1-1584 DEQRLRDEYR RLVEGLREAS AARETDAHLA NPVLPDEVLQ EAVPGSIRTA 1151 1200 ENSTTRP00000007861/1-772 EHFLGFLRRL LEYIKWRLRV QHVAQESPPA FLSGLAQRVC IQRKPLRFCA ENSP00000375809/1-760 EHFLGFLRRL LEYVKWRLRV QHVVQESPPA FLSGLAQRVC IQRKPLRFCA ENSBTAP00000002680/1-759 EHFLGFLRRL LEYVKWRLRV QHVVQESPPA FLSGLAQRVC IQRKPLRFCA bmy_15594T0/1-838 EHFLGFLRRL LEYVKWRLRV QHVVQESPPA FLSGLAQRVC IQRKPLRFCA BACU002110/1-1584 EHFLGFLRRL LEYVKWRLRV QHVVQESPPA FLSGLAQRVC IQRKPLRFCA 1201 1250 ENSTTRP00000007861/1-772 ERLRSLLHTL EIADLADFSP LTLLANFATL VSTYAKGFTI IIEPFDDRTP ENSP00000375809/1-760 ERLRSLLHTL EITDLADFSP LTLLANFATL VSTYAKGFTI IIEPFDDRTP ENSBTAP00000002680/1-759 ERLRSLLYTL EISDLTDFSP LTLLANFATL VSTYAKGFTI IIEPFDDRTP bmy_15594T0/1-838 ERLRSLLHTL EIADLADFSP LTLLANFATL VSTYAKGFTI IIEPFDDRTP BACU002110/1-1584 ERLRSLLHTL EIADLADFSP LTLLANFATL VSTYAKGFTI IIEPFDDRTP 1251 1300 ENSTTRP00000007861/1-772 TIANPILHFS CMDASLAIKP VFERFQSVII TSGTLSPLDI YPKILDFHPV ENSP00000375809/1-760 TIANPILHFS CMDASLAIKP VFERFQSVII TSGTLSPLDI YPKILDFHPV ENSBTAP00000002680/1-759 TIANPILHFS CMDASLAIKP VFERFQSVII TSGTLSPLDI YPKILDFHPV bmy_15594T0/1-838 TIANPILHFS CMDASLAIKP VFERFQSVII TSGTLSPLDI YPKILDFHPV BACU002110/1-1584 TIANPILHFS CMDASLAIKP VFERFQSVII TSGTLSPLDI YPKILDFHPV 1301 1350 ENSTTRP00000007861/1-772 TMATFTMTLA RVCLCPMIIG RGNDQVAISS KFETREDIXX XXXXXXXXXX ENSP00000375809/1-760 TMATFTMTLA RVCLCPMIIG RGNDQVAISS KFETREDIAV IRNYGNLLLE ENSBTAP00000002680/1-759 TMATFTMTLA RVCLCPMIIG RGNDQVAISS KFETREDIAV IRNYGNLLLE bmy_15594T0/1-838 TMATFTMTLA RVCLCPM--- ---------- ---------- ---------- BACU002110/1-1584 TMATFTMTLA RVCLCPMIIG RGNDQVAISS KFETREDIAV IRNYGNLLLE 1351 1400 ENSTTRP00000007861/1-772 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG ILENIQRNKL LFIETQDGAE ENSP00000375809/1-760 MSAVVPDGIV AFFTSYQYME STVASWYEQG ILENIQRNKL LFIETQDGAE ENSBTAP00000002680/1-759 MSAVVPDGIV AFFTSYQYME STVASWYEQG ILENIQRNKL LFIETQDGAE bmy_15594T0/1-838 MSAVVPDGIV AFFTSYQYME STVASWYEQG ILENIQRNKL LFIETQDGAE BACU002110/1-1584 MSAVVPDGIV AFFTSYQYME STVASWYEQG ILENIQRNKL LFIETQDGAE 1401 1450 ENSTTRP00000007861/1-772 TSVALEKYQE ---------- ---------- ---------- ---ACENGRG ENSP00000375809/1-760 TSVALEKYQE ---------- ---------- ---------- ---ACENGRG ENSBTAP00000002680/1-759 TSVALEKYQE ---------- ---------- ---------- ---ACENGRG bmy_15594T0/1-838 TSVALEKYQE VGITGGRGKS RVERGQRRQL RGDASRVLAS PPQACENGRG BACU002110/1-1584 TSVALEKYQE ---------- ---------- ---------- ---ACENGRG 1451 1500 ENSTTRP00000007861/1-772 AILLSVARGK VSEGIDF--- ---------- ---------- ---------- ENSP00000375809/1-760 AILLSVARGK VSEGIDF--- ---------- ---------- ---------- ENSBTAP00000002680/1-759 AILLSVARGK VSEGIDF--- ---------- ---------- ---------- bmy_15594T0/1-838 AILLSVARGK VSEGIDFGEW TRLSPPQAPA WMSGHFCSPR GPAAHSLGTH BACU002110/1-1584 AILLSVARGK VSEGIDF--- ---------- ---------- ---------- 1501 1550 ENSTTRP00000007861/1-772 ---------- ---------- ---------- ---------- -VHHYGRAVI ENSP00000375809/1-760 ---------- ---------- ---------- ---------- -VHHYGRAVI ENSBTAP00000002680/1-759 ---------- ---------- ---------- ---------- -VHHYGRAVI bmy_15594T0/1-838 GASPSFHPWV LCRALGAQPL KQHELPGHTR SALSLPLLCP AVHHYGRAVI BACU002110/1-1584 ---------- ---------- ---------- ---------- -VHHYGRAVI 1551 1600 ENSTTRP00000007861/1-772 MFGVPYVYTQ SRILKARLEY LRDQFQIREN DFLTFDAMRH AAQCVGRAIR ENSP00000375809/1-760 MFGVPYVYTQ SRILKARLEY LRDQFQIREN DFLTFDAMRH AAQCVGRAIR ENSBTAP00000002680/1-759 MFGVPYVYTQ SRILKARLEY LRDQFQIREN DFLTFDAMRH AAQCVGRAIR bmy_15594T0/1-838 MFGVPYVYTQ SRILKARLEY LRDQFQIREN DFLTFDAMRH AAQCVGRAIR BACU002110/1-1584 MFGVPYVYTQ SRILKARLEY LRDQFQIREN DFLTFDAMRH AAQCVGRAIR 1601 1650 ENSTTRP00000007861/1-772 GKTDYGLMVF ADKRFARADK RGKLPRWIQE HLTDANLNLT VDEGVQVAKY ENSP00000375809/1-760 GKTDYGLMVF ADKRFARGDK RGKLPRWIQE HLTDANLNLT VDEGVQVAKY ENSBTAP00000002680/1-759 GKTDYGLMVF ADKRFARADK RGKLPRWIQE HLTDANLNLT VDEGVQVAKY bmy_15594T0/1-838 GKTDYGLMVF ADKRFARADK RGKLPRWIQE HLTDANLNLT VDEGVQVAKY BACU002110/1-1584 GKTDYGLMVF ADKRFARADK RGKLPRWIQE HLTDANLNLT VDEGVQVAKY 1651 1700 ENSTTRP00000007861/1-772 FLRQMAQPFH REDQLGLSLL SLEQLESEET LRRIEQIAQQ L ENSP00000375809/1-760 FLRQMAQPFH REDQLGLSLL SLEQLESEET LKRIEQIAQQ L ENSBTAP00000002680/1-759 FLRQMAQPFH REDQLGLSLL SLEQLESEET LRRIEQIAQQ L bmy_15594T0/1-838 FLRQMAQPFH REDQLGLSLL SLEQLESEEA LRRIEQIAQQ L BACU002110/1-1584 FLRQMAQPFH REDQLGLSLL SLEQLESEET LRRIEQIAQQ L