KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:46 2014 Check: 00 .. Name: ENSTTRP00000007135/1-749 Len: 792 Check: 7580 Weight: 1.00 Name: ENSBTAP00000002681/1-750 Len: 792 Check: 1928 Weight: 1.00 Name: ENSP00000418525/1-750 Len: 792 Check: 1829 Weight: 1.00 Name: bmy_11856T0/1-780 Len: 792 Check: 6176 Weight: 1.00 Name: BACU000436/1-775 Len: 792 Check: 3869 Weight: 1.00 // 1 50 ENSTTRP00000007135/1-749 MGRSESQMDI TDISTPKPKK KQRWTPLEIS LSVLVLLLAV IAVTMIALYA ENSBTAP00000002681/1-750 MGRSESQMDI TDINTPKPKK KQRWTPLEIS LSVLVLLLTI IAVTMIALYA ENSP00000418525/1-750 MGKSESQMDI TDINTPKPKK KQRWTPLEIS LSVLVLLLTI IAVTMIALYA bmy_11856T0/1-780 MGRSESQMDI TDINIPKPKK KQRWTPLEIS LSVLVLLLTV IAVTMIALYA BACU000436/1-775 MGRSESQMDI TDINTPKPKK KQRWTPLEMS LSVLVLLLTV IAVTMIALYA 51 100 ENSTTRP00000007135/1-749 TYDDGICKSS DCIQSAARLI QNMDATAEPC TDFFKYACGG WLKRNVIPET ENSBTAP00000002681/1-750 TYDDGICKSS ECIKSAARLI QNMDATVEPC TDFFKYACGG WLKRNVIPET ENSP00000418525/1-750 TYDDGICKSS DCIKSAARLI QNMDATTEPC TDFFKYACGG WLKRNVIPET bmy_11856T0/1-780 TYD------- -----AARLI QNMDAAAEPC TNFFKYACGG WLKRNIIPET BACU000436/1-775 TYDDGICKSS DCIKSAARLI QNMDAAAEPC TDFFKYACGG WLKRNIIPET 101 150 ENSTTRP00000007135/1-749 SSRYSNFDIL RDELEVILKD VLQEPKTEDI VAVQKAKTLY RSCINESA-D ENSBTAP00000002681/1-750 SSRYSNFDIL RDELEVVLKD VLQEPKTEDI IAVQKAKMLY RSCINETAIE ENSP00000418525/1-750 SSRYGNFDIL RDELEVVLKD VLQEPKTEDI VAVQKAKALY RSCINESAID bmy_11856T0/1-780 SSRYSNFDIL RDELEVILKD VLQEPKTEDI VAVQKAKTLY RSCINESAID BACU000436/1-775 SSRYSNFDIL RDELEVILKD VLQEPKTEDI VAVQKAKTLY RSCINESAID 151 200 ENSTTRP00000007135/1-749 SRGGVPLLRL LPDIYDWPVV TENWNQTYGS SWTAEKSIAQ LNSKYGKKVI ENSBTAP00000002681/1-750 SRGGEPLLRL LPDIYDWPVA LENWEQKYGS SWTAEKSIAQ LNSKYGKKVI ENSP00000418525/1-750 SRGGEPLLKL LPDIYGWPVA TENWEQKYGA SWTAEKAIAQ LNSKYGKKVL bmy_11856T0/1-780 SRGGDPLLRL LPDIYDWPVV TENWEQTXGS SWTAEKSIAQ LNSKYGKKVI BACU000436/1-775 SRGGDPLLRL LPDIYDWPVV TENWEQTYG- SWTAEKSIAQ LNSKYGKKVI 201 250 ENSTTRP00000007135/1-749 INFFVGTDDK NSMNHVIHID QPRLGLPSRD YYECTGIYKE ACTAYVDFMI ENSBTAP00000002681/1-750 INFFVGTDDK NSTNHIIHID QPQLGLPSRD YYECTAAYKE ACTAYVDFMI ENSP00000418525/1-750 INLFVGTDDK NSVNHVIHID QPRLGLPSRD YYECTGIYKE ACTAYVDFMI bmy_11856T0/1-780 INFFVGTDDK NSMNHVIHID QPRLGLPSRD YYECTGIYKE ACTAYVDFMI BACU000436/1-775 INFFVGTDDK NSTNHVIHID QPRLGLPSRD YYECTGIYKE ACTAYVDFMI 251 300 ENSTTRP00000007135/1-749 SVAKLIRQER GLPVDEKEIS LEMNKVMELE KEIAN----- ---------- ENSBTAP00000002681/1-750 SVAKLIRQER GLPIDENQLS LEMNKVMDLE KEIAN----- ---------- ENSP00000418525/1-750 SVARLIRQEE RLPIDENQLA LEMNKVMELE KEIAN----- ---------- bmy_11856T0/1-780 SVAKLIRQEK GLPVBEXQLS XEMNRVMELE KEIANVKHIF SDTLNNVNRF BACU000436/1-775 SVAKLIRQEK GLPVDEKQLS SEMNRVMELE KEIANVKHIF SDTLNNVNHF 301 350 ENSTTRP00000007135/1-749 ---------- -ATTKSEDRN DPMLLYNKMT LAQIQNNFSL EISGKXXXXX ENSBTAP00000002681/1-750 ---------- -ATTKSEDRN DPMLLYNKMT LAEVQNKFSL EFSGKPFSWS ENSP00000418525/1-750 ---------- -ATAKPEDRN DPMLLYNKMT LAQIQNNFSL EINGKPFSWL bmy_11856T0/1-780 LLLSLLYRIL RATTKSEDRN DPMLLYNKMT LAQIQNNFSL EXSGKPFSWS BACU000436/1-775 LFLSLLYRIL RATTKSEDRN DPMLLYNKMT LAQIQNNFSL EISGKPFSWS 351 400 ENSTTRP00000007135/1-749 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX RDLQNLMSWR ENSBTAP00000002681/1-750 NFTNEIMSTV NINIPHEEEV IVYAPEYLTN LKLILAKYSA RDLQNLMSWR ENSP00000418525/1-750 NFTNEIMSTV NISITNEEDV VVYAPEYLTK LKPILTKYSA RDLQNLMSWR bmy_11856T0/1-780 NFTNEIMSTV NINIPNEEDV VVYAPEYLTK LKLILTKYSA RDLQNLMSWR BACU000436/1-775 NFTNEIMSTV NINIPNEEDV VVYAPEYLTK LKLILTKYSA RDLQNLMSWR 401 450 ENSTTRP00000007135/1-749 FIMDLVSSLS RTYKESRNAF RKALYGTTSE TATWRRCANY VNGNMENAVG ENSBTAP00000002681/1-750 FIMDLVSSLS RNYKESRNAF RKALYGTTSE TATWRRCANY VNGNMENAVG ENSP00000418525/1-750 FIMDLVSSLS RTYKESRNAF RKALYGTTSE TATWRRCANY VNGNMENAVG bmy_11856T0/1-780 FIMDLVSSLS RTYKESRNAF RKALYGTTTE TATWRRCANY VNGNMENAVG BACU000436/1-775 FIMDLVSSLS RTYKESRNAF RKALYGTTSE TATWRRCANY VNGNMENAVG 451 500 ENSTTRP00000007135/1-749 RLYVEAAFPG ESKHVVEDLI AQIREVFIQT LDDLTWMDAE TKKRAEEKAL ENSBTAP00000002681/1-750 RLYVEAAFPG DSKHVVEDLI AQIRAVFIQT LDDLTWMDAE TKKKAEEKAL ENSP00000418525/1-750 RLYVEAAFAG ESKHVVEDLI AQIREVFIQT LDDLTWMDAE TKKRAEEKAL bmy_11856T0/1-780 RLYVEAAFPG DSKHVVEDLI AQIREVFIQT LDDLTWMDAE TKKKAEEKAL BACU000436/1-775 RLYVEAAFPG DSKHVVEDLI AQIREVFIQT LDDLTWMDAE TKKKAEEKAL 501 550 ENSTTRP00000007135/1-749 AIKERIGYPD DIISNDNKLN NEYLELSYRE DEYFENIIQN LKFSQNKQLK ENSBTAP00000002681/1-750 AIKERIGYPD DIISNDDKLN KEYLELSYQE EEYFENIIQN LKFGQNRQLK ENSP00000418525/1-750 AIKERIGYPD DIVSNDNKLN NEYLELNYKE DEYFENIIQN LKFSQSKQLK bmy_11856T0/1-780 AIKERIGYPD DIISNDNKLN NEYLELSYRE DEYFENIIQN LKFSQNKQLK BACU000436/1-775 AIKERIGYPD DIISNDNKLN NEYLELSYRE DAYFENIIQN LKFSQNKQLK 551 600 ENSTTRP00000007135/1-749 KLREKVDKDE ---------- ------WISG AAVVNAFYSS GRNQIVFPAG ENSBTAP00000002681/1-750 KLREKVDKDE ---------- ------WISG AAVVNAFYSS GRNQIVFPAG ENSP00000418525/1-750 KLREKVDKDE ---------- ------WISG AAVVNAFYSS GRNQIVFPAG bmy_11856T0/1-780 KLREKVDKDE YVYSSFLIRS FGRGPLWISG AAVVNAFYSS GRNQIVFPAG BACU000436/1-775 KLREKVDKDE ---------- ------WISG AAVVNAFYSS GRNQIVFPAG 601 650 ENSTTRP00000007135/1-749 ILQPPFFSAQ QSNSLNYGGI GMVIGHEITH GFDDNGRNFN KDGDLVDWWT ENSBTAP00000002681/1-750 ILQPPFFSAQ QPKSLNYGGI GMVIGHEITH GFDDNGRNFN KDGDLVDWWT ENSP00000418525/1-750 ILQPPFFSAQ QSNSLNYGGI GMVIGHEITH GFDDNGRNFN KDGDLVDWWT bmy_11856T0/1-780 ILQPPFFSAQ QSNSLNYGGI GMVIGHEITH GFDDNGRNFN KDGDLVDWWT BACU000436/1-775 ILQPPFFSAQ QSNSLNYGGI GMVIGHEITH GFDDNGRNFN KDGDLVDWWT 651 700 ENSTTRP00000007135/1-749 QQSANNFKDQ SQCMVYQYGN FSWDLAGGQH LNGINTLGEN IADNGGIGQA ENSBTAP00000002681/1-750 QQSANNFKDL SQCMVYQYGN FSWDLANGQH LNGINTLGEN IADNGGIGQA ENSP00000418525/1-750 QQSASNFKEQ SQCMVYQYGN FSWDLAGGQH LNGINTLGEN IADNGGLGQA bmy_11856T0/1-780 QQSANNFKDQ SQCMVYQYGN FSWDLAGGQH LNGINTLGEN IADNGGIGQA BACU000436/1-775 QQSANNFKDQ SQCMVYQYGN FSWDLAGGQH LNGINTLGEN IADNGGIGQA 701 750 ENSTTRP00000007135/1-749 YRAYQNYVKK HGEEKLLPGL DLNHKQLFFL NFAQVWCGTY RPEYAVNSIK ENSBTAP00000002681/1-750 YRAYQNYVKK HGEEKLLPGL DLNHRQLFFL NFAQVWCGTY RTEYALNSIK ENSP00000418525/1-750 YRAYQNYIKK NGEEKLLPGL DLNHKQLFFL NFAQVWCGTY RPEYAVNSIK bmy_11856T0/1-780 YRAYQNYVKK HGEEKLLPGL DLNHKQLFFL NFAQVWCGTY RPEYAVNSIK BACU000436/1-775 YRAYQNYVKK HGEEKLLPGL DLNHKQLFFL NFAQVWCGTY RPEYAVNSIK 751 800 ENSTTRP00000007135/1-749 TDVHSPGNFR IIGTLQNSPE FSEAFHCHKN SYMNPEKKCR VW ENSBTAP00000002681/1-750 TDVHSPGNFR IIGTLQNSPQ FSEAFHCRKN SYMNPEKKCR VW ENSP00000418525/1-750 TDVHSPGNFR IIGTLQNSAE FSEAFHCRKN SYMNPEKKCR VW bmy_11856T0/1-780 TDVHSPGNFR IIGTLQNSPE FSEAFHCRKN SYMNPEKKCR VW BACU000436/1-775 TDVHSPGNFR IIGTLQNSLE FSDAFHCHKN SYMNPEKKCR VW