KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:50 2014 Check: 00 .. Name: ENSTTRP00000011963/1-1009 Len: 1041 Check: 8158 Weight: 1.00 Name: bmy_16002T0/1-638 Len: 1041 Check: 1518 Weight: 1.00 Name: ENSBTAP00000002695/1-1008 Len: 1041 Check: 6355 Weight: 1.00 Name: ENSP00000337194/1-1007 Len: 1041 Check: 4369 Weight: 1.00 Name: BACU005116/1-1041 Len: 1041 Check: 7170 Weight: 1.00 // 1 50 ENSTTRP00000011963/1-1009 ---------- ---------- ---------- --MAAAEAQS LREQPEMEDA bmy_16002T0/1-638 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002695/1-1008 ---------- ---------- ---------- --MAAAEAPS LREQPEMEDA ENSP00000337194/1-1007 ---------- ---------- ---------- --MAAAETQS LREQPEMEDA BACU005116/1-1041 MRDGPAPSSS SSSGFHRPGG HRHRRPGVRK FKMAAAEAQS LREQPEMEDA 51 100 ENSTTRP00000011963/1-1009 DNSEKSVNEE NGEVSEDQSQ NKHSRHKKKK HKHRSKHKKH KHSSEEDKDK bmy_16002T0/1-638 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002695/1-1008 -NSEKSVNEE NGEVSEDQSQ NKHSRHKKKK HKHRSKHKKH KHSSEEDKDR ENSP00000337194/1-1007 -NSEKSINEE NGEVSEDQSQ NKHSRHKKKK HKHRSKHKKH KHSSEEDKDK BACU005116/1-1041 DNSEKSVNEE NGEVSEDQSQ NKHSRHKKKK HKHRSKHKKH KHSSEEDKDK 101 150 ENSTTRP00000011963/1-1009 KHKHKHKHKK HKRKEVIDAS DKEGMSPAKR TKLDDLALLE DLEKQRALIK bmy_16002T0/1-638 ---------- ---------- MIEGLS--KA SHLLELCLL- ---------- ENSBTAP00000002695/1-1008 KHKHKHKHKK HKRKEVADAS DKEGMSPAKR TKLDDLALLE DLEKQRALIK ENSP00000337194/1-1007 KHKHKHKHKK HKRKEIIDAS DKEGMSPAKR TKLDDLALLE DLEKQRALIK BACU005116/1-1041 KHKHKHKHKK HKRKEVIDAS DKEGMSPAKR TKLDDLALLE DLEKQRALIK 151 200 ENSTTRP00000011963/1-1009 AELDNELMEG KVQSGMGLIL QGYESGSEEE GEIHEKARNG NRSSTRSSST bmy_16002T0/1-638 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002695/1-1008 AELDNELMEG KVQSGMGLIL QGYESGSEEE GEIHEKARNG NRSSTRSSST ENSP00000337194/1-1007 AELDNELMEG KVQSGMGLIL QGYESGSEEE GEIHEKARNG NRSSTRSSST BACU005116/1-1041 AELDNELMEG KVQSGMGLIL QGYESGSEEE GEIHEKARNG NRSSTRSSST 201 250 ENSTTRP00000011963/1-1009 KGKLELMDNK NSTKKRSKSR SKERTRHRSD KKKSKGGVEI VKEKATRSKS bmy_16002T0/1-638 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002695/1-1008 KGKLELVDNK NSTKKRSKSR SKERTRHRSD KKKSKGGVEI VKEKATRSKS ENSP00000337194/1-1007 KGKLELVDNK ITTKKRSKSR SKERTRHRSD KKKSKGGIEI VKEKTTRSKS BACU005116/1-1041 KGKLELMDNK NSTKKRSKSR SKERTRHRSD KKKSKGGVEI VKEKATRSKS 251 300 ENSTTRP00000011963/1-1009 KERKKSKSPS KRSKSQDQAR KSKSPTLRRR SQEKIGKARS PADDKVKIED bmy_16002T0/1-638 ---------- ---------- ---------- ----VGEPRA D--------- ENSBTAP00000002695/1-1008 KERKKSKSPS KRSKSQDEAR KSKSPTLRRR SQEKVGKARS PVDDKAKVED ENSP00000337194/1-1007 KERKKSKSPS KRSKSQDQAR KSKSPTLRRR SQEKIGKARS PTDDKVKIED BACU005116/1-1041 KERKKSKSPS KRSKSQDQAR KSKSPTLRRR SQEKIGKARS PADDKVKIED 301 350 ENSTTRP00000011963/1-1009 KSKSKDRKKS PIINESRSRD RGKKSRSPID LRGKSKDRRS RSKERKSKRS bmy_16002T0/1-638 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002695/1-1008 KSKAKDRKKS PVINESRSRD RGKKSRSPVD LRGKSKDRRS RSKERKSKRP ENSP00000337194/1-1007 KSKSKDRKKS PIINESRSRD RGKKSRSPVD LRGKSKDRRS RSKERKSKRS BACU005116/1-1041 KNKSKDRKKS PIINESRSRD RGKKSRSPID LRGKSKDRRS RSKERKSKRS 351 400 ENSTTRP00000011963/1-1009 ETDKEKKPIK SPSKDASSGK ENRSPSRRPG RSPKRRSLSP KQRDKSRRSR bmy_16002T0/1-638 ---------- -PWKE-NAGS LNGDAFLRQG ---------- ---------- ENSBTAP00000002695/1-1008 EADKEKKPVK SPSKDASSGK ENRSPSRRPG RSPKRRSLSP KQRDKSRRSR ENSP00000337194/1-1007 ETDKEKKPIK SPSKDASSGK ENRSPSRRPG RSPKRRSLSP KPRDKSRRSR BACU005116/1-1041 ETDKEKKPIK SPSKDASSGK ENRSPSRRPG RSPKRRSLSP KQRDKSRRSR 401 450 ENSTTRP00000011963/1-1009 SPLLNDRRSK QSKSPSRTLS PGRRAKSRSL ERKRREPERR RLSSPRTRPR bmy_16002T0/1-638 ---------- ---------- ---------- ---------- -----KTRPR ENSBTAP00000002695/1-1008 SPLVNDRRSK QSKSPSRTLS PGRRAKSRSL ERKRREPERR RLSSPRTRPR ENSP00000337194/1-1007 SPLLNDRRSK QSKSPSRTLS PGRRAKSRSL ERKRREPERR RLSSPRTRPR BACU005116/1-1041 SPLLNDRRSK QSKSPSRTLS PGRRAKSRSL ERKRREPERR RLSSPRTRPR 451 500 ENSTTRP00000011963/1-1009 DDILSRRERS KDASPISRWS PARRRASRSP VRRRSRSPLR RSRSPRRRSR bmy_16002T0/1-638 DDILSRRERS KDASPISRWS PARRRASRSP VRRRSRSPLR RSRSPRRRSR ENSBTAP00000002695/1-1008 DDILSRRERS KDASPISRWS PARRRASRSP VRRRSRSPLR RSRSPRRRSR ENSP00000337194/1-1007 DDILSRRERS KDASPINRWS PTRRR-SRSP IRRRSRSPLR RSRSPRRRSR BACU005116/1-1041 DDILSRRERS KDASPISRWS PARRRASRSP VRRRSRSPLR RSRSPRRRSR 501 550 ENSTTRP00000011963/1-1009 SPRRRDRGRR SRSRLRRRSR SRGGRRRRSR SKVKEDKFKG SLSEGMKVEQ bmy_16002T0/1-638 SPRRRDRGRR SRSRLRRRSR SRGGRRRRSR SKVKEDKFKG SLSEGMKVEQ ENSBTAP00000002695/1-1008 SPRRRDRGRR SRSRLRRRSR SRGGRRRRSR SKVKEDKFKG SLSEGMKVEQ ENSP00000337194/1-1007 SPRRRDRGRR SRSRLRRRSR SRGGRRRRSR SKVKEDKFKG SLSEGMKVEQ BACU005116/1-1041 SPRRRDRGRR SRSRLRRRSR SRGGRRRRSR SKVKEDKFKG SLSEGMKVEQ 551 600 ENSTTRP00000011963/1-1009 ESSSDDNLED FDVEEEDEEA LIEQRRIQRQ AIVQXXXXXX XXXXXXAPSE bmy_16002T0/1-638 ESSSDDNLED FDVEEEDEEA LIEQRRIQRQ AIVQKYKYLA EDSNMSVPSE ENSBTAP00000002695/1-1008 ESSSDDNLED FDVEEEDEEA LIEQRRIQRQ AIVQKYKYLA DDSNLSVPSE ENSP00000337194/1-1007 ESSSDDNLED FDVEEEDEEA LIEQRRIQRQ AIVQKYKYLA EDSNMSVPSE BACU005116/1-1041 ESSSDDNLED FDVEEEDEEA LIEQRRIQRQ AIVQKYKYLA EDSNMSVPSE 601 650 ENSTTRP00000011963/1-1009 PSSPQSSTRT RSPSPEDVLE RVAADVKEYE RENVDTFEAS VKAKHNLMTV bmy_16002T0/1-638 PSSPQSSTRT RSPSPEDILE RVAADVKEYE RENVDTFEAS VKAKHNLMTV ENSBTAP00000002695/1-1008 PSSPQSSTRS RSPSPDDILE RVAADVKEYE RENVDTFEAS VKAKHNLMAV ENSP00000337194/1-1007 PSSPQSSTRT RSPSPDDILE RVAADVKEYE RENVDTFEAS VKAKHNLMTV BACU005116/1-1041 PSSPQSSTRT RSPSPEDILE RVAADVKEYE RENVDTFEAS VKAKHNLMTV 651 700 ENSTTRP00000011963/1-1009 EQNNGSSQKK LLAPDMFTES DDMFAAYFDS ARLRAAGIGK DFKENPNLRD bmy_16002T0/1-638 EQNNGSSQKK LLAPDMFTES DDMFAAYFDS ARLRAAGIGK DFKENPNLRD ENSBTAP00000002695/1-1008 EQNNGSSQKK LLAPDMFTES DDMFAAYFDS ARLRAAGIGK DFKENPNLRD ENSP00000337194/1-1007 EQNNGSSQKK LLAPDMFTES DDMFAAYFDS ARLRAAGIGK DFKENPNLRD BACU005116/1-1041 EQNNGSSQKK LLAPDMFTES DDMFAAYFDS ARLRAAGIGK DFKENPNLRD 701 750 ENSTTRP00000011963/1-1009 NWTDAEGYYX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16002T0/1-638 NWTDAEGYYR VNIGEVLDKR YNVYGYTGQG VFSNVVRARD NARANQEVAV ENSBTAP00000002695/1-1008 NWTDAEGYYR VNIGEVLDKR YNVYGYTGQG VFSNVVRARD NARANQEVAV ENSP00000337194/1-1007 NWTDAEGYYR VNIGEVLDKR YNVYGYTGQG VFSNVVRARD NARANQEVAV BACU005116/1-1041 NWTDAEGYYR VNIGEVLDKR YNVYGYTGQG VFSNVVRARD NARANQEVAV 751 800 ENSTTRP00000011963/1-1009 XXXXXXXXXQ KTGLKELEFL KKLNDADPDD KFHCLRLFRH FYHKQHLCLV bmy_16002T0/1-638 KIIRNNELMQ KTGLKELEFL KKLNDADPDD KFHCLRLFRH FYHKQHLCLV ENSBTAP00000002695/1-1008 KIIRNNELMQ KTGLKELEFL KKLNDADPDD KFHCLRLFRH FYHKQHLCLV ENSP00000337194/1-1007 KIIRNNELMQ KTGLKELEFL KKLNDADPDD KFHCLRLFRH FYHKQHLCLV BACU005116/1-1041 KIIRNNELMQ KTGLKELEFL KKLNDADPDD KFHCLRLFRH FYHKQHLCLV 801 850 ENSTTRP00000011963/1-1009 FEPLSMNLRE VLKKYGKDVG LHIKAVRSYS QQLFLALKLL KRCNILHADI bmy_16002T0/1-638 FEPLSMNLRE VLKKYGKDVG LHIKAVRSYS QQLFLALKLL KRCNILHADI ENSBTAP00000002695/1-1008 FEPLSMNLRE VLKKYGKDVG LHIKAVRSYS QQLFLALKLL KRCNILHADI ENSP00000337194/1-1007 FEPLSMNLRE VLKKYGKDVG LHIKAVRSYS QQLFLALKLL KRCNILHADI BACU005116/1-1041 FEPLSMNLRE VLKKYGKDVG LHIKAVRSYS QQLFLALKLL KRCNILHADI 851 900 ENSTTRP00000011963/1-1009 KPDNILVNES KTILKLCDFG SASHVADNDI TPYLVSRFYR APEIIIGKSY bmy_16002T0/1-638 KPDNILVNES KTILKLCDFG SASHVADNDI TPYLVSRFYR APEIIIGKSY ENSBTAP00000002695/1-1008 KPDNILVNES KTILKLCDFG SASHVADNDI TPYLVSRFYR APEIIIGKSY ENSP00000337194/1-1007 KPDNILVNES KTILKLCDFG SASHVADNDI TPYLVSRFYR APEIIIGKSY BACU005116/1-1041 KPDNILVNES KTILKLCDFG SASHVADNDI TPYLVSRFYR APEIIIGKSY 901 950 ENSTTRP00000011963/1-1009 DYGIDMWSVG CTLYELYTGK ILFPGKTNNH MLKLAMDLKG KMPNKMIRKG bmy_16002T0/1-638 DYGIDMWSVG CTLYELYTGK ILFPGKTNNH MLKLAMDLKG KMPNKMIRKG ENSBTAP00000002695/1-1008 DYGIDMWSVG CTLYELYTGK ILFPGKTNNH MLKLAMDLKG KMPNKMIRKG ENSP00000337194/1-1007 DYGIDMWSVG CTLYELYTGK ILFPGKTNNH MLKLAMDLKG KMPNKMIRKG BACU005116/1-1041 DYGIDMWSVG CTLYELYTGK ILFPGKTNNH MLKLAMDLKG KMPNKMIRKG 951 1000 ENSTTRP00000011963/1-1009 VFKDQHFDQN LNFMYIEVDK VTEREKVTVM STINPTKDLL ADLIGCQRLP bmy_16002T0/1-638 VFKDQHFDQN LNFMYIEVDK VTEREKVTVM STINPTKDLL ADLIGCQRLP ENSBTAP00000002695/1-1008 VFKDQHFDQN LNFMYIEVDK VTEREKVTVM STINPTKDLL ADLIGCQRLP ENSP00000337194/1-1007 VFKDQHFDQN LNFMYIEVDK VTEREKVTVM STINPTKDLL ADLIGCQRLP BACU005116/1-1041 VFKDQHFDQN LNFMYIEVDK VTEREKVTVM STINPTKDLL ADLIGCQRLP 1001 1050 ENSTTRP00000011963/1-1009 EDQRKKVHQL KDLLDQILML DPAKRISINQ ALQHAFIQEK I bmy_16002T0/1-638 EDQRKKVHQL KDLLDQILML DPAKRISINQ ALQHAFIQEK I ENSBTAP00000002695/1-1008 EDQRKKVHQL KDLLDQILML DPAKRISINQ ALQHAFIQEK I ENSP00000337194/1-1007 EDQRKKVHQL KDLLDQILML DPAKRISINQ ALQHAFIQEK I BACU005116/1-1041 EDQRKKVHQL KDLLDQILML DPAKRISINQ ALQHAFIQEK I