KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:52 2014 Check: 00 .. Name: ENSP00000274673/1-508 Len: 695 Check: 8183 Weight: 1.00 Name: ENSBTAP00000002699/1-620 Len: 695 Check: 595 Weight: 1.00 Name: ENSTTRP00000011965/1-503 Len: 695 Check: 9505 Weight: 1.00 Name: bmy_16003T0/1-507 Len: 695 Check: 3279 Weight: 1.00 Name: BACU005117/1-382 Len: 695 Check: 127 Weight: 1.00 // 1 50 ENSP00000274673/1-508 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002699/1-620 FLSLSLFPQR TAVSPELLPL PLFHGGCDKL SWLPEGKVFS NVQRERIISR ENSTTRP00000011965/1-503 ---------- ---------- ---------- ---------- ---------- bmy_16003T0/1-507 ---------- ---------- ---------- ---------- ---------- BACU005117/1-382 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000274673/1-508 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002699/1-620 FLKESVLKRV FRSKQLRWEG PSSQEEGPRH TSPASRVKTG ASQIRKNMFH ENSTTRP00000011965/1-503 ---------- ---------- ---------- ---------- ---------- bmy_16003T0/1-507 ---------- ---------- ---------- ---------- ---------- BACU005117/1-382 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000274673/1-508 ---------- ---------- --------MG RRNENCANSL RVSN------ ENSBTAP00000002699/1-620 QGKERILEDV LIPGYHSPEG PEGIRNQDSQ ETEEQDGQKN RLQWDFMKHD ENSTTRP00000011965/1-503 ---------- ---------- --------VG RNGEDSGPRL HASV------ bmy_16003T0/1-507 ---------- ---------- ---------M TLNCSEGQQP RAGP------ BACU005117/1-382 ---------- ---------- ---------M DMREYYRTLL YIAW------ 151 200 ENSP00000274673/1-508 ---------- ---------- --------IS QENLSHWNLD SE-------- ENSBTAP00000002699/1-620 SLTLDSSTVL TCLISLHVFC EKHWQGRWIS TQNLSHWNLD AE-------- ENSTTRP00000011965/1-503 ---------- ---------- ---------S RENLSHWNLD TE-------- bmy_16003T0/1-507 ---------- ---------- ---------L SRVLRFLLTR CGCGAEVHAL BACU005117/1-382 ---------- ---------- ---------L EQELYILRTR VG-------- 201 250 ENSP00000274673/1-508 -----VPVSE NKNLPA---- ----GRDGAA GGKINKNYLE IPVEQLMLEP ENSBTAP00000002699/1-620 -----VPAPE NKSPPP---- ----GRDSAT GGKINKNHLE IPAEQLLLEL ENSTTRP00000011965/1-503 -----VPVPE NKNLPP---- ----GRDGAT GDKMNKNQ-E IPVEXXXXXX bmy_16003T0/1-507 FEISLVPYPQ RACPTPVQEC EETEKRDGAR NGKINKNHLE IPVEQLMLEL BACU005117/1-382 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000274673/1-508 NLSVHSQKST QNSKQGIFQL WNCPLNEGST IEKREFKKSS VETGFNVINH ENSBTAP00000002699/1-620 TFSEFVPQRT QNSKQGLFQL WSYPPSEAST TELRDFKISP LETGCNETNN ENSTTRP00000011965/1-503 XXXXXXXXXX XNSKQGIFQV WSYPLNKGSA TENTDFKKSS VETGCNVTSN bmy_16003T0/1-507 TLSEHAPKTT QNSKQGIFQL WSYPLNKGSA XENRDFKKSS METGCHVTSN BACU005117/1-382 ---------- ---------- ---------- --NRDV--VC LKVFCCF--- 301 350 ENSP00000274673/1-508 PIRVFTLNHP LTIASVDKQV GPYPGLPMPL GLCWPYADGD FFKNRNEIHV ENSBTAP00000002699/1-620 PMRLFGVN-P LTGASVDKRV GSHPALQAPP SLCRPYADGD SFKDRSEPHI ENSTTRP00000011965/1-503 RIRLFAVNHS LTSASVDKPV GSYPALQTPL SHCWPYADGD FFKDRNEPHI bmy_16003T0/1-507 RIRFFAVNHS LTSASVDKPV GSYPALQTPL SHCWPYADGD FFKDRNEPHI BACU005117/1-382 -IEPFGNSSR ATHA------ ---------- --------GT YF-------V 351 400 ENSP00000274673/1-508 SSCS--TIEN NDGETLPAPN WNLKHGNSSV EENFTDESDL SENEKTNDTL ENSBTAP00000002699/1-620 NLCS--TLEN NSGELLTAPN WNLKYGNSSV EENLTDESDL SENEKANDTL ENSTTRP00000011965/1-503 NLCS--TLGN NSGELLTAPN WNLKYGNSSV EENLTDESDL SENEKANDTL bmy_16003T0/1-507 NLCS--TLGN NSGELLTAPN WNLKYGNSSV EENLTDESDL SENEKANDTL BACU005117/1-382 RACSQNNTGN NSGELLTAPN WNLKYGNSSV EENLTDESDL SENEKANDTL 401 450 ENSP00000274673/1-508 LSYFKKVDLN LKPETIKNVE EPFTEEPNEV FPYPDFLPPP FSALDLHNLA ENSBTAP00000002699/1-620 LSYFKKMDLH LKPETVENVE EPFTEELNEV FPYPDFLPPP FSTLDLHKLA ENSTTRP00000011965/1-503 LSYFKKMDLN LKPETIENVE DSFTEEPSEV FPYPDFLPPP FNTLDLHKLA bmy_16003T0/1-507 LSYFKKMDLN LKPETIENVE DSFTEEPSEV FPYPDFLPPP FNTLDLHKLA BACU005117/1-382 LSYFKKMDLN LKPETIENVE DSFTEEPSEV FPYPDFLPPP FNTLDLHKLA 451 500 ENSP00000274673/1-508 LSKSDNWKVT VDPAETSVEH LITRLLELER LQHMTIQKER PRLQTTFCTP ENSBTAP00000002699/1-620 LSKSDSWKMT VETPDSSLEP LMARLLDMER LQHLTIQRER PRLQTSFCAP ENSTTRP00000011965/1-503 ISKSENWKMT VEPLDSSLEH LVACLLDLER LQRMTIQRER PRLQTSFCAP bmy_16003T0/1-507 ISKSENWKMT MESLDSSLEH LVARLLDMER LQRTTIQRER PRLQTXFCAP BACU005117/1-382 ISKSENWKMT MESLDSSLEH LVARLLDMER LQRVTIQRER PRLQTSFCAP 501 550 ENSP00000274673/1-508 AVTERPSSSK ATPKVRQPKL CDSLSLQIPC VDKSQEKSKN NSGSCKLEQN ENSBTAP00000002699/1-620 VATEQPPSSK AVSKMRQPKP PDPVGLQMAC VEKSHEKIKN SSGSYKPEHS ENSTTRP00000011965/1-503 LATERPSSSK AVPRMRQPRP SDSGGLQTTC VEKSHEERKT NSGSCKLGYN bmy_16003T0/1-507 LATERPSSSK AVPKMRQPKP PDSVGLQTTC VEKSHEERKT SSGSCKLEYN BACU005117/1-382 LAAERPASSK AVPKMRQPKP SDSVGLQTAC VEKSHEEGKT NSGSCKLEYS 551 600 ENSP00000274673/1-508 ALKRNWSNAG KYRWNSRPLS LKSSSTPKQL IETYD--KNP KSSILSPCQE ENSBTAP00000002699/1-620 APKWNWNCAG KYKWSSRP-A LKTPATPKQV TVVHDDFKNP KISILNPCQE ENSTTRP00000011965/1-503 APKWNCSRAG KYKWNSRP-A LKTSPTTKQV IAAYDDFKNP KVSILNPRGE bmy_16003T0/1-507 APKWNCSRAG KYKWNSRP-A LKTSPTTKQV IAAYDNFKNP KVSILNPCQE BACU005117/1-382 APKWNCSRAG KYKWNSRP-A LKTSPTTKQV IAAYDDFKNP KVSILNPCQE 601 650 ENSP00000274673/1-508 LSFKPTIGHT NQSMVKMVST RCLPWRSPMP VSPIPLTFPE NQKEEIKAPK ENSBTAP00000002699/1-620 LTIKPTPVQM TQLLVKTISA RCPPPKSPTP ISPIPLSLPD SHREE----- ENSTTRP00000011965/1-503 LSEEPASAET ARVLVKMLST RCLPPKSPTP VSPVPLSFPE NQREEIKAPP bmy_16003T0/1-507 LSAKPAPAQT TQLLVKMVST RCLPPKSPTR VSPILLSFPE NQREEIKAPP BACU005117/1-382 PSAKPAPAQT TQLLVKMVST RCLPPKSPTP VSPIPLSFPE NQREEIKAPT 651 700 ENSP00000274673/1-508 RNFGTKKKLY RQNIVLNRPF SIQKLNCLSP SLIAKDKCCS PIEQK ENSBTAP00000002699/1-620 ---------- ---------- ---------- ---------- ----- ENSTTRP00000011965/1-503 R---TGKKLY RKDMVPNRPF YIQKLNC-SP SLIAKDSCGS PIDQK bmy_16003T0/1-507 R---TRKKLY QKDMVLNRPF CIQKLNC--- ---------- ----- BACU005117/1-382 R---TRKKLH RKDMVLNRPF YIQKLNC--- ---------- -----