KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:54 2014 Check: 00 .. Name: ENSTTRP00000004095/1-658 Len: 889 Check: 5277 Weight: 1.00 Name: ENSP00000289013/1-670 Len: 889 Check: 362 Weight: 1.00 Name: ENSBTAP00000002715/1-662 Len: 889 Check: 2802 Weight: 1.00 Name: bmy_07608T0/1-797 Len: 889 Check: 2463 Weight: 1.00 Name: BACU001484/1-680 Len: 889 Check: 1658 Weight: 1.00 // 1 50 ENSTTRP00000004095/1-658 ---------- ---------- ---------- ---------- ---------- ENSP00000289013/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002715/1-662 ---------- ---------- ---------- ---------- ---------- bmy_07608T0/1-797 MRTTQALRQI SGFQGGPRRG LEPGHRGICV CRRRSTPISX GAGQAQEAPR BACU001484/1-680 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004095/1-658 ---------- ---------- -----MVPEG RPDGAG---- ---------- ENSP00000289013/1-670 ---------- ---------- -----MILEE RPDGAG---- ---------- ENSBTAP00000002715/1-662 ---------- --------RP EQRAAMVPED RSDGPG---- ---------- bmy_07608T0/1-797 ATLGRAEKXR PGRVSPSGPH PPRAPELPPA APRGLGLRSE RTVYRRALSC BACU001484/1-680 ---------- ---------- ---------- MVQAEG---- ---------- 101 150 ENSTTRP00000004095/1-658 ---------- ---------- ---------- ---------- ---------- ENSP00000289013/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002715/1-662 ---------- ---------- ---------- ---------- ---------- bmy_07608T0/1-797 HQVRACAAPP PPPRAAPRRR GGRREGRRRK RGAGLLRGPA AGGLGRELLD BACU001484/1-680 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000004095/1-658 ---------- ------AGEE SAR------L Q-GCDLLANS QHGCLQSRRA ENSP00000289013/1-670 ---------- ------AGEE SPR------L Q-GCDSLTQI QCGQLQSRRA ENSBTAP00000002715/1-662 ---------- ------AGEE SARLQAAGTV RKGCDLSTDS LHGRLQSRRA bmy_07608T0/1-797 AGGAGGGHWQ GGWERRGGSP GSRAPREILA Q-GCDLLANS QHGCLQSRRA BACU001484/1-680 ---------- ------GGD- ---------C Q-GCDLLANS QNGCLQSRRA 201 250 ENSTTRP00000004095/1-658 QIHQQINREL RMRTGAENLY RATSNARVRE TVALELSYVN SSLQLLKEEL ENSP00000289013/1-670 QIHQQIDKEL QMRTGAENLY RATSNNRVRE TVALELSYVN SNLQLLKEEL ENSBTAP00000002715/1-662 RIHQQIDREL RMRTGAENLY RATSNARVRE TVALELSDVN SSLQLLKEEL bmy_07608T0/1-797 RIHQQINREL RMRTGAENLY RATSNARVRE TVALELSYVN SSLQLLKEEL BACU001484/1-680 QIHQQINREL RMRTGAENLY RATSNARVRE TVALELSYVN SSLQLLKEEL 251 300 ENSTTRP00000004095/1-658 EGLDGNVDAD QPQSEGVTVP MIPLGLKETK QLDWATPLKE LISGHFGEDS ENSP00000289013/1-670 EELSGGVDPG RHGSEAVTVP MIPLGLKETK ELDWSTPLKE LISVHFGEDG ENSBTAP00000002715/1-662 AGLDSSGDTG QPESEGVTAP MIPLGLKETK PLDWAPPLKE LICRHFGEDG bmy_07608T0/1-797 EGLDGNVDAD QPQR------ ---------- --------CE LISGHFGEDS BACU001484/1-680 EGLDGNVDAN QPQSEGITVP MIPLGLKETK QLDWATPLKE LISGHFGEDG 301 350 ENSTTRP00000004095/1-658 ASYEAEIREL EDLRQ----- -AARTPSRSE AGLELLTAYY NQLCFQEARF ENSP00000289013/1-670 ASYEAEIREL EALRQ----- -AMRTPSRNE SGLELLTAYY NQLCFLDARF ENSBTAP00000002715/1-662 ASYEAEIREL EDLRQ----- -ATRTPSRSK AGLELLTAYY NQLCFLEARF bmy_07608T0/1-797 ASYEAEIQEL EDLRQ----- -ATRTPSRSE AGLELLTAYY NQLCFQEARF BACU001484/1-680 ASYEAEIREL EDLRQGPCLG LSPQCPAQS- PGVALVV--- -HSSPREGR- 351 400 ENSTTRP00000004095/1-658 VTPARSLGLL FHWYDSLTGV PAQQRALAFE KGSVLFNIGA LHTQIGARQD ENSP00000289013/1-670 LTPARSLGLF FHWYDSLTGV PAQQRALAFE KGSVLFNIGA LHTQIGARQD ENSBTAP00000002715/1-662 VTPARSLGLL FHWYDSLTGL PAQQRALAFE KGSVLFNIGA LHTQIGARQN bmy_07608T0/1-797 VTPARSLGLL FHWYDSLTGV PAQQRALAFE KGSVLFNIGA LHTQIGARQD BACU001484/1-680 ---------- ---YDSLTGV PAQERALAFE KGSVLFNIGA LHTQIGARQD 401 450 ENSTTRP00000004095/1-658 RSCPEGTSCA VEAFQRAAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000289013/1-670 RSCTEGARRA MEAFQRAAGA FSLLRENFSH APSPDMSAAS LCALEQLMMA ENSBTAP00000002715/1-662 RSCPEGIGRA VEAFQRAAGA FSLLRENFSH APSPDMSPTS LSMLEQLMRA bmy_07608T0/1-797 RSCPEGTSCA VEAFQRAVGA FSFLRENFSH APSPDMSPAS LSMLEQLMTA BACU001484/1-680 RSCPEGTSCA VEAFQRAAGA FSLLRENFSH APSPDMSPAS LSMLEQLMTA 451 500 ENSTTRP00000004095/1-658 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX-XXXXXXX XXXXXXXXXX ENSP00000289013/1-670 QAQECVFEGL SPPASMAPQD CLAQLRLAQE AA-QVAAEYR LVHRTMAQPP ENSBTAP00000002715/1-662 QAQECVFEGL LLQAPRAAHD CLAQLRLAQE AA-QVAAEYR LVHRTMAQPP bmy_07608T0/1-797 QAQECVFEGL SLQAPVAPHD CLAQLHLAQE AA-QVAAEYR LVHQTMTQPP BACU001484/1-680 QAQECVFEGL SLQAPVALRD CLAQLHLAQE AAQQVAAEYR LVHQTMARPP 501 550 ENSTTRP00000004095/1-658 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX-XXXXX-- -XXXXXXXXX ENSP00000289013/1-670 VHDYVPVSWT ALVHVKAEYF RSLAHYHVAM AL-CDGSP-- -ATEGELPTH ENSBTAP00000002715/1-662 VRGYVPFPWI TLVHVKAEHF HALAHYHAAL GL-CDGAS-- -VAESELPVL bmy_07608T0/1-797 VQDYVPFPWT TLVHVKAEYF RALAHYHAAL AL-CDGAP-- -VAEAELPAL BACU001484/1-680 VQDRVPLPWT SLVHVKAEYF RALAWPTPTR PWPCVTAPPP AVAEAELPAL 551 600 ENSTTRP00000004095/1-658 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXK AHLKRAILGQ EEALRLHAVC ENSP00000289013/1-670 EQVFLQPPTS SKPRGPVLPQ ELEERRQLGK AHLKRAILGQ EEALRLHALC ENSBTAP00000002715/1-662 EKVFL---AS AEARGPALPQ EREERSKLGK AHLRRALLGQ EAALQLHAVC bmy_07608T0/1-797 EQIFLGFPAS SEPRGPALPQ EHEERRKLGK AHLKRAVLGQ EEALRLHAVC BACU001484/1-680 EQIFLGLPAS SEPRGPALPQ EQEERRKLGK AHLKRAILGQ EEALRLHAVC 601 650 ENSTTRP00000004095/1-658 RALRRVDLLQ VVLAQALRRS LAKYSELDLE DDFCEAAEAP DVR------- ENSP00000289013/1-670 RVLREVDLLR AVISQTLQRS LAKYAELDRE DDFCEAAEAP DIQ------- ENSBTAP00000002715/1-662 RALRREDLLQ AVLARALQRS LAKYSELDLE DDFHEATEAP DIQ------- bmy_07608T0/1-797 RALRSVDLLQ GVLTQALRRS LAKYSELDLE DDFCEAAEAP DVRREQPGPL BACU001484/1-680 RALRRVDLLQ VVLAQALRRS LAKYSELDLE DDFCEAAEAP DVRREQPGPL 651 700 ENSTTRP00000004095/1-658 PKTQRRPEGR APSFSRVKVA DIFHRL---- ---------- ---------- ENSP00000289013/1-670 PKTHQKPEAR MPRLSQGKGP DIFHRL---- ---------- ---------- ENSBTAP00000002715/1-662 PKTQQRPEGR TPSFSRVKVA DIFHRL---- ---------- ---------- bmy_07608T0/1-797 AKTQRRLEGR APSFSRVKVA DIFHRL---- ---------- ---------- BACU001484/1-680 AKTRRRPEGR APSFSRVKVA DIFHRLPLLL SVPKCGDRGE GAPGRGSPTC 701 750 ENSTTRP00000004095/1-658 ---------- ---GPLSVFS ARNRWRLAGP IHVARGEGGF GFTLRGDAPV ENSP00000289013/1-670 ---------- ---GPLSVFS AKNRWRLVGP VHLTRGEGGF GLTLRGDSPV ENSBTAP00000002715/1-662 ---------- ---GPLSVFS AKNHWRLVGP LHLSRGEGGF GFTLRGDSPV bmy_07608T0/1-797 ---------- ---GPLSVFS AKNRWRLAGP IHVARGEGGF GFTLRGDAPV BACU001484/1-680 GSPTRPLTSD RPQGPLSVFS AKNRWRLAGP IHVARGEGGF GFTLRGDAPV 751 800 ENSTTRP00000004095/1-658 LIAAVIPGGR AAAAGLKEGD YIVSVNGQPC RWWKHADVVA QLKGVGDEGV ENSP00000289013/1-670 LIAAVIPGSQ AAAAGLKEGD YIVSVNGQPC RWWRHAEVVT ELKAAGEAGA ENSBTAP00000002715/1-662 LIAAVVPGGR AAEAGLKEGD YIVSVNGQPC RWWKHAEVVA QLKGVGDEGV bmy_07608T0/1-797 LIAAVVPGSR AAAAGLKQGD YIVSVNGQPC RWWKHADVVA QLKRVGDAGV BACU001484/1-680 LIAAVVPGGR AAAAGLKQGD YIVSVNGQPC RWWKHADVVA QLKGVGDEGV 801 850 ENSTTRP00000004095/1-658 SLQVLTLLPG AEPPGSGDRR PSP---GGLL RSQKECGWET PGPAQASPR- ENSP00000289013/1-670 SLQVVSLLPS SRLPSLGDRR PVLLGPRGLL RSQREHGCKT PASTWASPR- ENSBTAP00000002715/1-662 SLQVVTLLPA AELPVSGDRR PAL---GGLL RSQKECGQET PVPSRGSPRP bmy_07608T0/1-797 SLQVLTLLPS AEPPGSGDRR PAL---GGLL RSQKECGWET PEPAQASPR- BACU001484/1-680 SLQVLTLLPG AEPPGSGDRR PAL---GGLL RSQKECGWET PEPAQASPR- 851 900 ENSTTRP00000004095/1-658 -PLLGWNRKA KRGKAGGCPQ PHTSRAPGRQ --------- ENSP00000289013/1-670 -PLLNWSRKA QQGKTGGCPQ PCAPVKPAPP SSLKHPGWP ENSBTAP00000002715/1-662 RPLLGWNHKA NRGKTGRRLS P--------- --------- bmy_07608T0/1-797 -PLLGWNRKA KRGKTGRRLS P----APHP- --------- BACU001484/1-680 -PLLGWNRKA KRGKTGGRLS P----APHP- ---------