KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:55 2014 Check: 00 .. Name: ENSTTRP00000006429/1-1264 Len: 1265 Check: 9610 Weight: 1.00 Name: ENSP00000352336/1-1265 Len: 1265 Check: 5344 Weight: 1.00 Name: ENSBTAP00000002717/1-1201 Len: 1265 Check: 3978 Weight: 1.00 Name: bmy_11103T0/1-837 Len: 1265 Check: 761 Weight: 1.00 Name: BACU009716/1-1198 Len: 1265 Check: 4842 Weight: 1.00 // 1 50 ENSTTRP00000006429/1-1264 MSTTVNVDTL PEYEKSQIKR ALELGTVMTV FSFRKSTPER RTVQVIMETQ ENSP00000352336/1-1265 MSTTVNVDSL AEYEKSQIKR ALELGTVMTV FSFRKSTPER RTVQVIMETR ENSBTAP00000002717/1-1201 ---------- ---------- ---------- ---------- ---------- bmy_11103T0/1-837 MSTAVNVDAL PEYEKSQIKR ALELGTVMTV FSFRKSTPER RTVQVIMETQ BACU009716/1-1198 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006429/1-1264 QVAWSKTADK IEGFLDIMEI KEIRPGKNSK DFERAKAVRQ KEECCFTILY ENSP00000352336/1-1265 QVAWSKTADK IEGFLDIMEI KEIRPGKNSK DFERAKAVRQ KEDCCFTILY ENSBTAP00000002717/1-1201 ---------- ----VDIMEI KEIRPGKSSK DFERAKAVRQ KEECCFTVLY bmy_11103T0/1-837 QVAWSKTADK IEGFLDIMEI KEIRPGKNSK DFERAKAVRQ KEECCFSILY BACU009716/1-1198 ---------- -------MEI KEIRPGKNSK DFERAKAVRQ KEECCFTILY 101 150 ENSTTRP00000006429/1-1264 GTQFVLNTLS LAADSKEDAT KWLSGLKILH QEVMSASTPT IIESWLRKQI ENSP00000352336/1-1265 GTQFVLSTLS LAADSKEDAV NWLSGLKILH QEAMNASTPT IIESWLRKQI ENSBTAP00000002717/1-1201 GSQFILSTLS LAADSKEDAA KWLSGLKILH QEVMSASTPT IIESWLRKQI bmy_11103T0/1-837 GSQFVLSTLS LAADSKEDAT KWLSGLKILH QEVMSASTPT IIES------ BACU009716/1-1198 GTQFVLSTLS LAADSKEDAT KWLSGLKILH QEVMSASTPT IIESWLRKQI 151 200 ENSTTRP00000006429/1-1264 YSVDQTRRNS ISLRELKTIL PLVNFKVSSA KFLKDKFVEI GAHKDELSFE ENSP00000352336/1-1265 YSVDQTRRNS ISLRELKTIL PLINFKVSSA KFLKDKFVEI GAHKDELSFE ENSBTAP00000002717/1-1201 YSVDQTRRNS ISLRELKTIL PLVNFKVSSA KFLKDKFLEI GAHKDELSFE bmy_11103T0/1-837 ---------- ISLRELKTIL PLVNFKVSSA KFLKDKFV-- ---------- BACU009716/1-1198 YSVDQTRRNS ISLRELKTIL PLVNFKVSSA KFLKDKFVEI GAHKDELSFE 201 250 ENSTTRP00000006429/1-1264 QFHLFYKKLM FEQQKLILDE FKKDSSVFIL GNTDRPDASA VHLHDFQRFL ENSP00000352336/1-1265 QFHLFYKKLM FEQQKSILDE FKKDSSVFIL GNTDRPDASA VYLHDFQRFL ENSBTAP00000002717/1-1201 QFHLFYKKLM FEQQKSILDE FKKDSSVFLL GNTDRPDASA VHLHDFQRFL bmy_11103T0/1-837 ---------- ---------- ---------- ---------- ---------- BACU009716/1-1198 QFHLFYKKLM FEQQKLILDE FKKDSSVFIL GNTDRPDASA VHLHDFQRFL 251 300 ENSTTRP00000006429/1-1264 LHEQQELWAQ DLNKVRERMT KFIDDTMRET AEPFLFVDEF LTYLFSRENS ENSP00000352336/1-1265 IHEQQEHWAQ DLNKVRERMT KFIDDTMRET AEPFLFVDEF LTYLFSRENS ENSBTAP00000002717/1-1201 LHEQQELWAQ DLNKVRERMT KFIDDTMRET AEPFLFVDEF LTYLFSRENS bmy_11103T0/1-837 ---------- ---------- ---------- ---------F LTYLFSRENS BACU009716/1-1198 LHEQQELWAQ DLNKVRERMT KFIDDTMRET AEPFLFVDEF LTYLFSRENS 301 350 ENSTTRP00000006429/1-1264 IWDEKYDMVD VQDMNNPLSH YWISSSHNTY LTGDQLRSES SPEAYIRCLR ENSP00000352336/1-1265 IWDEKYDAVD MQDMNNPLSH YWISSSHNTY LTGDQLRSES SPEAYIRCLR ENSBTAP00000002717/1-1201 IWDEKYDVVD MQDMNNPLSH YWISSSHNTY LTGDQLRSES STEAYIRCLR bmy_11103T0/1-837 IWDEKYDVVD MQDMNNPLSH YWISSSHNTY LTGDQLRSES SPEAYIRCLR BACU009716/1-1198 IWDEKYDVVD MQDMNNPLSH YWISSSHNTY LTGDQLRSES SPEAYIRCLR 351 400 ENSTTRP00000006429/1-1264 MGCRCIEXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XHVCVTS-FP ENSP00000352336/1-1265 MGCRCIELDC WDGPDGKPVI YHGWTRTTKI KFDDVVQAIK DHAFVTSSFP ENSBTAP00000002717/1-1201 MGCRCIELDC WDGPDGKPII YHGWTRTTKI KFDDVVQAIK DHAFVTSSFP bmy_11103T0/1-837 MGCRCIELDC WDGPDGKPII YHGWTRTTKI KFDDVVQAIK DHAFVTSSFP BACU009716/1-1198 MGCRCIELDC WDGPDGKPII YHGWTRTTKI KFDDVVQAIK DHAFVTSSFP 401 450 ENSTTRP00000006429/1-1264 VILSIEEHCC VQQQRHMARV FKEAFGDLLL TKPTEASADQ LPSPSQLREK ENSP00000352336/1-1265 VILSIEEHCS VEQQRHMAKA FKEVFGDLLL TKPTEASADQ LPSPSQLREK ENSBTAP00000002717/1-1201 VILSIEEHCC VEQQRHMARV FKEVFGDLLL TKPKEASADQ LPSPSQLRGK bmy_11103T0/1-837 VILSIEEHCC VEQQRHMARV FREVLGDLLL TKPTEASADQ LPSPSQLREK BACU009716/1-1198 VILSIEEHCC VEQQRHMARV FREALGDLLL TKPTEASADQ LPSPSQLREK 451 500 ENSTTRP00000006429/1-1264 IIIKHKKLGP RVDVDVNVED KKDEHRQQGE LYMWDSIDQK WTRHYCAIAD ENSP00000352336/1-1265 IIIKHKKLGP RGDVDVNMED KKDEHKQQGE LYMWDSIDQK WTRHYCAIAD ENSBTAP00000002717/1-1201 IIIKHKKLGP RGDVDVNMED KKDEHKQQGE LHMWDPIDQK WTRHYCAVAD bmy_11103T0/1-837 IIIKHKKLGP RGDVDVNMED KKDEHKQQGE LYMWDSIDQK WTRHYCAIAD BACU009716/1-1198 IIIKHKKLGP RGDVDVNMED KKDEHKQQGE LYMWDSIDQK WTRHYCAIAD 501 550 ENSTTRP00000006429/1-1264 AKLSFSDDIE QTMEDEQPPD IAPTELHFGE KWFHKKVEKR TSAEKLLQEY ENSP00000352336/1-1265 AKLSFSDDIE QTMEEEVPQD IPPTELHFGE KWFHKKVEKR TSAEKLLQEY ENSBTAP00000002717/1-1201 AKLSFSDDIE QTVEEELPLD IPPTELHFGE KWFHKKVEKR TSAEKLLQEY bmy_11103T0/1-837 AKLSFSDDIE QTVEDEQPPD IAPTELHFGE KWFHKKVEKR TSAEKLLQEY BACU009716/1-1198 AKLSFSDDIE QTVEDEQPRD IAPTELHFGE KWFHKKVEKR TSAEKLLQEY 551 600 ENSTTRP00000006429/1-1264 CAETGGKDGT FLVRESETYP NDYTLSFWRS GRVQHCRIRS TMEGGTLKYY ENSP00000352336/1-1265 CMETGGKDGT FLVRESETFP NDYTLSFWRS GRVQHCRIRS TMEGGTLKYY ENSBTAP00000002717/1-1201 CAETGGKDGT FLVRESETFP NDYTLSFWRS GRVQHCRIRS TMEGGTMKYY bmy_11103T0/1-837 CAETGGKDGT FLVRESETYP NDYTLSFWRS GRVQHCRIRS TVEGGTLKYY BACU009716/1-1198 CAETGGKDGT FLVRESETYP NDYTLSFWRS GRVQHCRIRS TVEGGTLKYY 601 650 ENSTTRP00000006429/1-1264 LTDNLMFTSI YALIQHYSET HLRCAEFELR LTDPVPNPSP HESKPWYYDG ENSP00000352336/1-1265 LTDNLTFSSI YALIQHYRET HLRCAEFELR LTDPVPNPNP HESKPWYYDS ENSBTAP00000002717/1-1201 LTDNLMFTSI YALIQHYRET HLRCAEFELR LTDPVPNPNP HESKPWYYDG bmy_11103T0/1-837 LTDNLMFTSI YALIQHYSET HLRCAEFELR LTDPVPNPSP HESKPWYYDG BACU009716/1-1198 LTDNLMFTSI YALIQHYSET HLRCAEFELR LTDPVPNPSP HESKPWYYDG 651 700 ENSTTRP00000006429/1-1264 LSRGEAEDML MRVPRDGAFL IRKREGSDSY AITFRARGKV KHCRINRDGR ENSP00000352336/1-1265 LSRGEAEDML MRIPRDGAFL IRKREGSDSY AITFRARGKV KHCRINRDGR ENSBTAP00000002717/1-1201 LSRGEAEDML MRIPRDGAFL IRKREGTDSY AITFRARGKV KHCRINRDGR bmy_11103T0/1-837 LSRGEAEDML MRVPRDGAFL IRKREGADSY AITFRARGKV KHCRINRDGR BACU009716/1-1198 LSRGEAEDML MRVPRDGAFL IRKREGTDSY AITFRARGKV KHCRINRDGR 701 750 ENSTTRP00000006429/1-1264 HFVLGTSAYF ESLVELVSYY EKHALYRKMK LRYPVTPELL ERYNMERDIN ENSP00000352336/1-1265 HFVLGTSAYF ESLVELVSYY EKHSLYRKMR LRYPVTPELL ERYNMERDIN ENSBTAP00000002717/1-1201 HFVLGTSAYF ESLVELVSYY EKHALYRKMK LRYPVTPELL ERYNTERDIN bmy_11103T0/1-837 HFVLGTSAYF ESLVELVSYY EKHALYRKMK LRYP------ ---------- BACU009716/1-1198 HFVLGTSAYF ESLVELVSYY EKHALYRKMK LRYPVTPELL ERYNMERDVN 751 800 ENSTTRP00000006429/1-1264 SLYDVSRMYV DPSEISPSMP QRTVKALYDY KAKQNDELSF CRGALIHNVS ENSP00000352336/1-1265 SLYDVSRMYV DPSEINPSMP QRTVKALYDY KAKRSDELSF CRGALIHNVS ENSBTAP00000002717/1-1201 SLYDVSRMYV DPSEINPSMP QRTVKALYDY RAKQSDELSF CRGALIHNVS bmy_11103T0/1-837 ---------- ---------- -RTVKALYDY KAKQSDELSF CRGALIHNVS BACU009716/1-1198 SLYDVSRMYV DPSEINPSMP QRTVKALYDY KAKQSDELSF CRGALIHNVS 801 850 ENSTTRP00000006429/1-1264 KEPGGWWKGD YGTRIQQYFP SNYVEDISTA DGEDLEKQII EDNPLGSLCR ENSP00000352336/1-1265 KEPGGWWKGD YGTRIQQYFP SNYVEDISTA DFEELEKQII EDNPLGSLCR ENSBTAP00000002717/1-1201 KEPGGWWKGD YGTRIQQYFP SNYVEDISPT EGEEVDKQII EDNPLGSLCR bmy_11103T0/1-837 KEPGGWWKGD YGTRIQQYFP SNYVEDISTA DGEELEKQII EDNPLGSLCR BACU009716/1-1198 KEPGGWWKGD YGTRIQQYFP SNYVEDISTA DGEELEKQII EDNPLGSLCR 851 900 ENSTTRP00000006429/1-1264 GILDLNTYNV VKAPQGKNQK PFVFILEPKK QGDPPVEFAT DKVEELFEWF ENSP00000352336/1-1265 GILDLNTYNV VKAPQGKNQK SFVFILEPKQ QGDPPVEFAT DRVEELFEWF ENSBTAP00000002717/1-1201 GILNLNIRNV VKAPHGKNQK PFVFILEPKK QGDPPVEFAT DSVEELFEWF bmy_11103T0/1-837 GILDLNTYNV ---------- ---------- ---------- ---------- BACU009716/1-1198 GILDLNTYNV VKAPQGKNQK PFVFILEPKK QGDPPVEFAT DKVEELFEWF 901 950 ENSTTRP00000006429/1-1264 QSIREITWKI DTKENNMKYW EKNQSIAIEL SDLVVYCKPT SKTKDNLENP ENSP00000352336/1-1265 QSIREITWKI DTKENNMKYW EKNQSIAIEL SDLVVYCKPT SKTKDNLENP ENSBTAP00000002717/1-1201 QSIREITWKM DAKENNMKYW EKNQSIAIEL SDLVVYCKPT SKTKDNLENP bmy_11103T0/1-837 ---------- ---------- ---------- ---------- -------ENP BACU009716/1-1198 QSIREITWKI DTKENNMKYW EKNQSIAIEL SDLVVYCKPT SKTKDNLENP 951 1000 ENSTTRP00000006429/1-1264 DFREIRSFVE TKADSIVRQK PNDLLKYNQK GLTRIYPKGQ RVDSSNYDPF ENSP00000352336/1-1265 DFREIRSFVE TKADSIIRQK PVDLLKYNQK GLTRVYPKGQ RVDSSNYDPF ENSBTAP00000002717/1-1201 DFREIRSFVE TKADSIVRQK PSDLLKYNQK GLTRVYPKGQ RVDSSNYDPF bmy_11103T0/1-837 DFREIRSFVE TKADSVVRQK PNDLLKYNQK GLTRVYPKGQ RVDSSNYDPF BACU009716/1-1198 DFREIRSFVE TKADSVVRQK PNDLLKYNQK GLTRVYPKGQ RVDSSNYDPF 1001 1050 ENSTTRP00000006429/1-1264 RLWLCGSQMV ALNFQTPDKY LQMNHALFSL NGRTGYVLQP ESMRAEKYDP ENSP00000352336/1-1265 RLWLCGSQMV ALNFQTADKY MQMNHALFSL NGRTGYVLQP ESMRTEKYDP ENSBTAP00000002717/1-1201 RLWLCGSQMV ALNFQTPDKY MQMNHALFSL NGRTGYVLQP ESMRAEKYDP bmy_11103T0/1-837 RLWLCGSQMV ALNFQTPD-- ---------- ---------- ---------- BACU009716/1-1198 RLWLCGSQMV ALNFQTPDKY LQMNHALFSL NGRTGYVLQP ESMRAEKYDP 1051 1100 ENSTTRP00000006429/1-1264 MPPESQRKIL MTLTVKVLGA RHLPKPGRSI ACPFVEVEIC GAEYDNNKFK ENSP00000352336/1-1265 MPPESQRKIL MTLTVKVLGA RHLPKLGRSI ACPFVEVEIC GAEYDNNKFK ENSBTAP00000002717/1-1201 MPPESQRKIQ MTLTVKVLGA RHLPKPGRSI ACPFVEVEIC GAEYDSNKFK bmy_11103T0/1-837 ---------- ---------- ---------- ---------- ---------- BACU009716/1-1198 MPPESQRKIL MTLTVKVLGA RHLPKPGRSI ACPFVEVEIC GAEYDNNKFK 1101 1150 ENSTTRP00000006429/1-1264 TTVVNDNGLS PVWAPTQEKV TFEIYDPNLA FLRFVVYEED MFSDPNFLAH ENSP00000352336/1-1265 TTVVNDNGLS PIWAPTQEKV TFEIYDPNLA FLRFVVYEED MFSDPNFLAH ENSBTAP00000002717/1-1201 TTVVNDNGLS PVWTPTQEKV TFEIYDPNLA FLRFVVYEED MFSDPNFLAH bmy_11103T0/1-837 -----DNGLS PVWAPTQEKV TFEIYDPNLA FLRFVVYEED MFSDPNFLAH BACU009716/1-1198 TTVVNDNGLS PVWAPTQEKV TFEIYDPNLA FLRFVVYEED MFSDPNFLAH 1151 1200 ENSTTRP00000006429/1-1264 ATFPIKGIKS GFRSVPLKNG YSEDMELASL LVFCEMRPVL ESEEELYSSC ENSP00000352336/1-1265 ATYPIKAVKS GFRSVPLKNG YSEDIELASL LVFCEMRPVL ESEEELYSSC ENSBTAP00000002717/1-1201 ATYPIKGIKS GFRSVPLKNG YSEDIELASL LVFCEMRPVL ESEEELYSSC bmy_11103T0/1-837 ATFPIKGIKS ---------- ---------- ---------- ---------- BACU009716/1-1198 ATFPIKGIKS GFRSVPLKNG YSEDIELACL LVFCEMRPVL ESEEELYSSC 1201 1250 ENSTTRP00000006429/1-1264 RQLRRRQEEL NNQLFLYDTH QNLRSANRDA LVREFNVNEN QLQLYQEKCN ENSP00000352336/1-1265 RQLRRRQEEL NNQLFLYDTH QNLRNANRDA LVKEFSVNEN QLQLYQEKCN ENSBTAP00000002717/1-1201 RQLRRRQEEL NNQLFLYDTH QNLRSATRDA LVREFNVNEN QLQLYQEKCN bmy_11103T0/1-837 ---------- ---------- ---------- --------EN AMA------- BACU009716/1-1198 RQLRRRQEEL NNQLFLYDTH QNLRSANRDA LVREFNVNEN QLQLYQEKCN 1251 1300 ENSTTRP00000006429/1-1264 RRLREKRVSN SKFYS ENSP00000352336/1-1265 KRLREKRVSN SKFYS ENSBTAP00000002717/1-1201 RRLREKRVSN SKFYS bmy_11103T0/1-837 ---------- ----- BACU009716/1-1198 RRLREKRVSN SKFYS