KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:18:58 2014 Check: 00 .. Name: BACU003783/1-1246 Len: 1246 Check: 5169 Weight: 1.00 Name: ENSBTAP00000002753/1-531 Len: 1246 Check: 1250 Weight: 1.00 Name: bmy_02356T0/1-468 Len: 1246 Check: 812 Weight: 1.00 Name: ENSTTRP00000014794/1-507 Len: 1246 Check: 2606 Weight: 1.00 // 1 50 BACU003783/1-1246 MSGNSAPSSE QNNNNYETKT NLRMSEKKCS WASYMTNSPT LIVMIGLPAR ENSBTAP00000002753/1-531 MSGNPASSSE QNNNSYETKA SLRISEKKCS WASYMTNSPT LIVMIGLPAR bmy_02356T0/1-468 MSGNSAPSSE QNNNNYETKT NLRMSEKKCS WASYMTNSPT LIVMIGLPAR ENSTTRP00000014794/1-507 MSGNSAPSSE QNNNNYETKT NLRMSEKKCS WASYMTNSPT LIVMIGLPAR 51 100 BACU003783/1-1246 GKTYVSKKLT RYLNWIGVPT KVFNLGVYRR QAVKSYKSYD FFRHDNEEAM ENSBTAP00000002753/1-531 GKTYVSKKLT RYLNWIGVPT KVFNLGVYRR QAVKSYKSYD FFRHDNEEAM bmy_02356T0/1-468 GKTYVSKKLT RYLNWIGVPT KVFNLGVYRR QAVKSYKSYD FFRHDNEEAM ENSTTRP00000014794/1-507 GKTYVSKKLT RYLNWIGVPT KVFNLGVYRR QAVKSYKSYD FFRHDNEEAM 101 150 BACU003783/1-1246 KIRKQCALVA LEDVKAYLTE DSGQIAVFDA TNTTRERRAL ILNFAEENSF ENSBTAP00000002753/1-531 KIRKQCALVA LKDVKAYLTE ESGQIAVFDA TNTTRERRDL ILNFAEENSF bmy_02356T0/1-468 KIRKQCALVA LEDVKAYLTE DSGQIAVFDA TNTTRERRAL ILNFAEENSF ENSTTRP00000014794/1-507 KIRKQCALVA LEDVKAYLTE DSGQIAVFDA TNTTRERRAL ILNFAEENSF 151 200 BACU003783/1-1246 KVFFVESVCD DPDVIAANIL EVKVSSPDYP ERNRENVMED FLKRIECYKV ENSBTAP00000002753/1-531 KVFFVESVCD DPDVIAANIL EVKVSSPDYP ERNRENVMDD FLKRIECYKV bmy_02356T0/1-468 KVFFVESVCD DPDVIAANIL EVKVSSPDYP ERNRENVMED FLKRIECYKV ENSTTRP00000014794/1-507 KVFFVESVCD DPDVIAANIL EVKVSSPDYP ERNRENVMED FLKRIECYKV 201 250 BACU003783/1-1246 TYQPLDPDNY DKDLSFIKVI NVGQRFLVNK VQDYIQSKIV YYLMNIHVHP ENSBTAP00000002753/1-531 TYQPLDPDSH DKDLSFIKVI NVGQRFLVNK VQDYIQSKIV YYLMNIHVHP bmy_02356T0/1-468 TYQPLDPDNY DKDLSFIKVI NVGQRFLVNK VQDYIQSKIV YYLMNIHVHP ENSTTRP00000014794/1-507 TYQPLDPDNY DKDLSFIKVI NVGQRFLVNK VQDYIQSKIV YYLMNIHVHP 251 300 BACU003783/1-1246 RTIYLCRHGE SEFNLLGKIG GDSGLSVRGK QFAQALRKFL EEQELADLKV ENSBTAP00000002753/1-531 RTIYLCRHGE SEFNLLGKIG GDSGLSVRGK QFAQALRKFL EEQEIADLKV bmy_02356T0/1-468 RTIYLCRHGE SEFNLLGKIG GDSGLSVRGK Q--------- ---------- ENSTTRP00000014794/1-507 RTIYLCRHGE SEFNLLGKIG GDSGLSVRGK QFAQALRKFL EEQEIADLKV 301 350 BACU003783/1-1246 WTSQLKRTIQ TAESLGVTYE QWKILNEIDA GVCEEITYAE IKEQYPDEFA ENSBTAP00000002753/1-531 WTSQLKRTIQ TAESLGVTYE QWKILNEIDA GVCEEMTYAE IQEQYPDEFA bmy_02356T0/1-468 ---------- ---------- ---------- GVCEEMTYAE IKEQYPDEFA ENSTTRP00000014794/1-507 WTSQLKRTIQ TAESLGVTYE QWKILNEIDA GVCEEMTYAE IKERYPDEFA 351 400 BACU003783/1-1246 LRDEEKYLYR YPGGESYQDL VQRLEPVIME LERQGNVLVI SHQAVMRCLL ENSBTAP00000002753/1-531 LRDEEKYLYR YPGGESYQDL VQRLEPVIME LERQGNVLVI SHQAVMRCLL bmy_02356T0/1-468 LRDEEKYLYR YPGGESYQDL VQRLEPVIME LERQGNVLVI SHQAVMRCLL ENSTTRP00000014794/1-507 LRDEEKYLYR YPGGESYQDL VQRLEPVIME LERQGNVLVI SHQAVMRCLL 401 450 BACU003783/1-1246 AYFLDKGADE LPYLRCPLHT IFKLTPVAYG CKVETIKLNV EAVNTHRDKP ENSBTAP00000002753/1-531 AYFLDKGADE LPYLRCPLHT IFKLTPVAYG CKVETIKLNV EAVNTHRDKP bmy_02356T0/1-468 AYFLDKGADE LPYLRCPLHT IFKLTPVAYG CKVETIKLNV EAVNTHRDKP ENSTTRP00000014794/1-507 AYFLDKGADE LPYLRCPLHT IFKLTPVAYG CKVETIKLNV EAVNTHRDKP 451 500 BACU003783/1-1246 TLIWLTLDSG QILPRRPRNG KPGADLANED IVSLQDFGVL LKFGIHQDQL ENSBTAP00000002753/1-531 TNNF------ ------PKSQ TP-------- ---------- ---------- bmy_02356T0/1-468 TNNF------ ------PKNQ TP-------- ---------- ---------- ENSTTRP00000014794/1-507 TNNF------ ------PKNQ TP-------- ---------- ---------- 501 550 BACU003783/1-1246 LSGKPYGLEG WRQNFGNPWA GRNVDVHGHG RVQGIRINNQ DKRHLDGESK ENSBTAP00000002753/1-531 ---------- ---------- ---------- ----VRMRR- ---------- bmy_02356T0/1-468 ---------- ---------- ---------- ----VRMRR- ---------- ENSTTRP00000014794/1-507 ---------- ---------- ---------- ----VRMRR- ---------- 551 600 BACU003783/1-1246 ICPELPPVDN SIFVAKEGEG QILGTYLCNS GYHLVGEKTL FCNASKGWNA ENSBTAP00000002753/1-531 ---------- ---------- ---------- ---------- ---------- bmy_02356T0/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014794/1-507 ---------- ---------- ---------- ---------- ---------- 601 650 BACU003783/1-1246 PAPECRLGHC PDPLLVNGEF SSLEPVNVND TITFKCNEHY VLKGSNWSRC ENSBTAP00000002753/1-531 ---------- ---------- NSFTPLSSSN TIR------- ---------- bmy_02356T0/1-468 ---------- ---------- NSFTPLSSSN TVR------- ---------- ENSTTRP00000014794/1-507 ---------- ---------- NSFTPLSSSN TVR------- ---------- 651 700 BACU003783/1-1246 LENHTWVPPF PVCKSRDCGP PENPTHGYFE GIDFNSGSTI TYYCEARYCL ENSBTAP00000002753/1-531 ---------- ---------- ---------- ---------- ---------- bmy_02356T0/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014794/1-507 ---------- ---------- ---------- ---------- ---------- 701 750 BACU003783/1-1246 VGTQHQQCID GEWSSTLPVC ELIREAPKPA ELELEKALNG QGKYIILLWL ENSBTAP00000002753/1-531 ---------- ---------- ---------- ---------- ---------- bmy_02356T0/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014794/1-507 ---------- ---------- ---------- ---------- ---------- 751 800 BACU003783/1-1246 LKGNCGPPPY LQFASPINEL NETEFETGTT LRYSCRPGYS RTSSKSHSLT ENSBTAP00000002753/1-531 ---------- ---------- ---------- -----RP--- ---------- bmy_02356T0/1-468 ---------- ---------- ---------- -----RP--- ---------- ENSTTRP00000014794/1-507 ---------- ---------- ---------- -----RP--- ---------- 801 850 BACU003783/1-1246 CDSTGNWKYR DFCVKKRCGN PGELLNGQVT AKTDYSFGSQ IEFSCSEGYI ENSBTAP00000002753/1-531 ---------- ---------- ---------- --RNYSVGSR ---------- bmy_02356T0/1-468 ---------- ---------- ---------- --RNYSVGSR ---------- ENSTTRP00000014794/1-507 ---------- ---------- ---------- --RNYSVGSR ---------- 851 900 BACU003783/1-1246 LIGSATSFCE VQDKGVGWSD PLPICEIAKC EPPPAISNGK HNGGDEDFYT ENSBTAP00000002753/1-531 ---------- ---------- PLQ------- ---------- ---------- bmy_02356T0/1-468 ---------- ---------- PLK------- ---------- ---------- ENSTTRP00000014794/1-507 ---------- ---------- PLE------- ---------- ---------- 901 950 BACU003783/1-1246 YGSSVTYSCD PDFSMLGTAS ISCRLENKTI SVWNPSPPTC KKITCPRPVV ENSBTAP00000002753/1-531 ---------- ---------- ---------- ---------- ---------- bmy_02356T0/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014794/1-507 ---------- ---------- ---------- ---------- ---------- 951 1000 BACU003783/1-1246 KYGRIISGFG PIYTYKQSIV FDCDKGYRLK GNKLIHCGAD NSWYPPPPIC ENSBTAP00000002753/1-531 ---------- ---------- ---------- ---------- -------PLS bmy_02356T0/1-468 ---------- ---------- ---------- ---------- -------PLS ENSTTRP00000014794/1-507 ---------- ---------- ---------- ---------- -------PLS 1001 1050 BACU003783/1-1246 ELNGCAGLPY IPHAMWGKYG YQKPTEEEVY DIGTALRYYC LSGYKPKADG ENSBTAP00000002753/1-531 PLRA------ ---------- ---------- ---------- ---------- bmy_02356T0/1-468 PLRA------ ---------- ---------- ---------- ---------- ENSTTRP00000014794/1-507 PLRA------ ---------- ---------- ---------- ---------- 1051 1100 BACU003783/1-1246 PTTVTCQRNL EWTPYIQCEA VCCPIPELSN GRITQLRKSG IDNSCTYRYG ENSBTAP00000002753/1-531 ---------- ---------- ---------- ---------- ---------- bmy_02356T0/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014794/1-507 ---------- ---------- ---------- ---------- ---------- 1101 1150 BACU003783/1-1246 DEVSYTCNKK YTSDARCTAD GTWSPKTPEC YPALCLKPEI EHGRLSVDKD ENSBTAP00000002753/1-531 ---------- ---------- ---------- ---------- ---------- bmy_02356T0/1-468 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014794/1-507 ---------- ---------- ---------- ---------- ---------- 1151 1200 BACU003783/1-1246 GYVEPENVTV QCDSGYGLVG SQSITCSEDR TWYPEVPKCE WEYPEGCEQV ENSBTAP00000002753/1-531 ---------- ---------- ---------- ---------- LDTQEGADQP bmy_02356T0/1-468 ---------- ---------- ---------- ---------- LDMQEGADQP ENSTTRP00000014794/1-507 ---------- ---------- ---------- ---------- LDMQEGADQ- 1201 1250 BACU003783/1-1246 IKGKKLMQCL PTPEEVRLAL EVYKLYVEIQ QLELQNDKAK QATQEC ENSBTAP00000002753/1-531 ---------- ---------- ---KTQAETS RAAHRLPSPA PPTSPS bmy_02356T0/1-468 ---------- ---------- ---KTQVSIP VV-------- ------ ENSTTRP00000014794/1-507 ---------- ---------- ---------- ---------- ------