KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:59 2014 Check: 00 .. Name: ENSP00000385357/1-752 Len: 765 Check: 8790 Weight: 1.00 Name: ENSBTAP00000002776/1-639 Len: 765 Check: 2850 Weight: 1.00 Name: ENSTTRP00000001449/1-718 Len: 765 Check: 3813 Weight: 1.00 Name: bmy_01607T0/1-716 Len: 765 Check: 2727 Weight: 1.00 Name: BACU003332/1-719 Len: 765 Check: 8781 Weight: 1.00 // 1 50 ENSP00000385357/1-752 MAHLLGSQAC MESLRTDLTD LQGAIVDVFS RAGPVRFPSW KFPDRMACDL ENSBTAP00000002776/1-639 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001449/1-718 MAHLLGSQAC MDSLRRDLTD LQGTIVDVFS RAGPVHFPSW KFPDRMACDL bmy_01607T0/1-716 MAHLLGSQAC MDSLRRDLTD LQGAIVDVFS RAGPMRFPSW KFPDRMACDL BACU003332/1-719 MAHLLGSQAC MDSLRRDLTD LQGAIVDVFS RAGPVRFPSW KFPDRMACDL 51 100 ENSP00000385357/1-752 DMVALLEHYD HVPGDPEFTQ LSHAVLLELV IDRLLLLLQS CMSYLENLGS ENSBTAP00000002776/1-639 -MVALLEHYD HVPGDPEFTQ LAHAVLLELV IDRLLLLLQS CASYLENLTL ENSTTRP00000001449/1-718 DMVALLEHYD HVPGDPEFTQ LSHAVLLELV IDRLLLLLQS CASYLENLSV bmy_01607T0/1-716 DMVALLEHYD HVPGDPEFTQ LSHAVLLELV IDRLLLLLQS CASYLENLGL BACU003332/1-719 DMVALLEHYD HVPGDPEFTQ LSHAVLLELV IDRLLLLLQS CASYLENLDL 101 150 ENSP00000385357/1-752 EQMMPPAQAA GPCMSVGLTV RRFWDSLLRL GTLHQQPLPQ KGANQRETPT ENSBTAP00000002776/1-639 EQIVPPARAA GPCMSVGLTV RRFWNSLLRL GMLSQQAALQ KRANQGETLT ENSTTRP00000001449/1-718 EQTVPPARAS RPCMSVGLTV RRFWNSLLRL VMLIR----Q KRANQGETPT bmy_01607T0/1-716 EQTVPSARAA RPCMSVGLTV RRFWNSLLRL GMLIRQVAPQ KRANQGETST BACU003332/1-719 EQTVPPARAA RPCMSVGLTV RRFWNSLLRL GMLIRQVAPQ KRANQGETPT 151 200 ENSP00000385357/1-752 SKPTTKGEPA RSPEYLTTKL IKPSSPVLGL PQTCQEPESI PVRASLQFPA ENSBTAP00000002776/1-639 SKPTAKGEPA GSRELGTAQL VKPPSPVPGL PQACPERDSL PVSVSLRRPG ENSTTRP00000001449/1-718 SKPTAKGEPA RSPEFVTAKL IKPTSPMPGL PQTCQELDRL PVSVSLQCPA bmy_01607T0/1-716 SKPTAKGEPA RSPEFVTAKL IKPASPMPGL PQTCQELDRL SVRISLQCPA BACU003332/1-719 SKPTAKGEPA RSPEFVTAKL IKPTSPMPGL PQTCQELDRL CVRISLPCPA 201 250 ENSP00000385357/1-752 TTFKNTRSVH SQTIETALVP CDACASVQGS LQKVGKVVIS LCQSQNLPSS ENSBTAP00000002776/1-639 GTAENTRSVH SQTIETALVP CDACTSVQSS LREVGKVVIN LCQSQNLPSS ENSTTRP00000001449/1-718 RTAENTRSVH SQTMETALVP CDACTSVQGS LQEVGKMVIS LCQSQNLPSS bmy_01607T0/1-716 RMAENTRSVH SQTVETALVP CDACTSVQGS LREVGKMVIS LCQSQNLPSS BACU003332/1-719 RMAENTRSVH SQTVETALVP CDACTSMQGS LREVGKMVIS LCQSQNLPSS 251 300 ENSP00000385357/1-752 LGQFQQLVQD SMGLRPLPAA TVGRWAAEQR KDLTRLSKHV EA-------L ENSBTAP00000002776/1-639 LGRFQQLVRD SMGHRPLPAA TVGLWAAEQS KDLACLGKLV GL-------L ENSTTRP00000001449/1-718 LGQFQHLVQD SMGLRPLPAT TMGHWAAEQS KDLARLSKHM GA-------L bmy_01607T0/1-716 LGQFQHLVQD SMGLRPLPAT TVGHWAAEQS KDLTRLSKHM GALTQLVGPL BACU003332/1-719 LGQFQHLVQG SMGLRPLPAT TVGHWAAEQS KDLTRLSKHM GALTQLVGPL 301 350 ENSP00000385357/1-752 RAQLEEAEGQ KDGLRKQAGK LEQALKQEQG ARRRQAEEDE QCLSEWEHDK ENSBTAP00000002776/1-639 RAQLEEAEGQ KDRLRMQVGE LEQALQEEQA ARQRQAQEAE QHRAQWERER ENSTTRP00000001449/1-718 RAQLEEAKGQ KDRLRKQVGE LEQALQQEQG AQRRQADEAE QRLAQWERDR bmy_01607T0/1-716 RAQLEEAKGQ KDRLRKQVGE LEQALQREQG AQRRQADEAE QRLAQ---AS BACU003332/1-719 RAQLEEAKGQ KDRLRKQVGE LEQALQREQE AQRQQADEAE QRLAQWERDR 351 400 ENSP00000385357/1-752 QQLLTETSDL KTKMATLERE LKQQRESTQA VEAKAQQLQE EGERRAAAER ENSBTAP00000002776/1-639 QQLLAETSDL KTKVATLEGE LKQQRESTQA VESKAQQLQA EAEHRLEAER ENSTTRP00000001449/1-718 RQLLTETSDL KTKVSTLEGE LKQQRESTRA VGSEAQELQ- EAEHRAAE-- bmy_01607T0/1-716 LSAAIETSDL KTKVSTLEGE LKQQRESTRA VETKAQELQE EAEHRAEAER BACU003332/1-719 QQLLAETSDL KTKVSTLEGE LKQQRESTRA VETKAQELQE EAEHRAEAER 401 450 ENSP00000385357/1-752 QVQQLEEQVQ QLEAQVQLLV GRLEGAGQQV CWASTELDKE KARVDSMVRH ENSBTAP00000002776/1-639 QVQHLEQ--- ----QVELLA GRLDGASQQI RWASTELDKE KARVDSMVRH ENSTTRP00000001449/1-718 QVQQLK---- ----QVQLLA GRLD-ASQQI RWASTELDKE KVRVDSMVRH bmy_01607T0/1-716 QVQQLEE--- ----QVQLLA GRLDGASQHI RWASTELDKE KARVDSMVRH BACU003332/1-719 QVQQLEE--- ----QVQLLA GRLDGASQQI RWASTELDKE KARVDSMVRH 451 500 ENSP00000385357/1-752 QESLQAKQRA LLKQLDSLDQ EREELRGSLD EAEAQRARVE EQLQ---SER ENSBTAP00000002776/1-639 QESLQAKQRA LLQQLDSLDQ ---QVRGGAE GGAG------ -------SSR ENSTTRP00000001449/1-718 QESLQAKQRA LLQQLDTLDQ EREELRGSLA EAEAQRVHVE KQLQHVQSER bmy_01607T0/1-716 QESLQAKQRA LLQQLDTLDQ EREELRGSLD EAEAQRVHVE EQLQHVQSER BACU003332/1-719 QESLQAKQRA LLQQLDTLDQ EREELRGSLD EAEAQRVHVE EQLQHVQSER 501 550 ENSP00000385357/1-752 EQGQCQLRAQ QELLQSLQRE KQGLEQATTD LRLTILELER ELEELKERER ENSBTAP00000002776/1-639 GQG-C----- EELLQSLQRE KQGLEQATTD LRLTISELER ELVELRERER ENSTTRP00000001449/1-718 EQGQCQLRAQ QELLQSLQRE KQGLEQATAD LQLTISERER ELVELRERER bmy_01607T0/1-716 EQGQCQLRAQ QELLQSLQRE KQGLEQATTD LQLTISELER ELVELRERER BACU003332/1-719 EQGQCQLRAQ QELLQSLQRE KQGLEQATAD LQLTISELER ELVELRERER 551 600 ENSP00000385357/1-752 LLVAFPDLHR PTETQIHGGR SSSVESQITC PTDSGNVTDH MERQVQSNDI ENSBTAP00000002776/1-639 LLVAFPDLHR PAEAQIQ--- ---------- --SSGNVTDD MERQVQANDI ENSTTRP00000001449/1-718 LLVAFPDLHR PVEAQIQRGR PDGVGCQKVG PTGSGNVTDD MERQVQANDI bmy_01607T0/1-716 LLVAFPDLHR PVEAQIQ--- ---------- --SSGNVTDD MEKQVQANDI BACU003332/1-719 LLVAFPDLHR PVEAQIQ--- ---------- --SSGNVTDD MEKQVQANDI 601 650 ENSP00000385357/1-752 RIRVLQEENG RLQSMLSKIR EVAQQGGLKL IPQDRLWSPS SKGTQGATPP ENSBTAP00000002776/1-639 RIRVLQEENG RLRSMLSKIR EVAQQGGLKL IPEDQLWALR SKGIQGAEPP ENSTTRP00000001449/1-718 RIRVLQEENR RLRSMLSKIR EVAQQGALKL IPQDQLWAPP SKGIHRAAPP bmy_01607T0/1-716 RIRVLQEENG RLRSMLSKIR EVAQQGGLKL IPQDQLWTPP SKGIHGAAPP BACU003332/1-719 RIRVLQEENG RLRSMLSKIR EVAQQGGLKL IPQDQLWTPP SKGIHGAAPP 651 700 ENSP00000385357/1-752 VQAKSTSPGP LGRQHLPSSR T---GRTLLG QPCTSPPRQP CTSPPRQPCT ENSBTAP00000002776/1-639 LQTARTSPGA PGRRHLPGSR PASAGRTLPG QPQASPPLRP ---------- ENSTTRP00000001449/1-718 AQAQRASPGP LGRQHSPGSR TASAGRTPPG QPQASPPQQP ---------- bmy_01607T0/1-716 AQAQRASPGP LGRRHSPGSR TASAGRTLPG QPQASPPQQP ---------- BACU003332/1-719 AQAQRASPGP LGRRHSPCSR KASAGRTLPG QPQASPPQQP ---------- 701 750 ENSP00000385357/1-752 SPPRQPCTSP SRQPCSQPSK SLLEGVTHLD TCTQNPIKVL VRLRKRLSPG ENSBTAP00000002776/1-639 ---------- ----HRRPGE SSPEDATYLT NCAQSPIRAL ARLRRRLSPS ENSTTRP00000001449/1-718 ---------- ----CSRPSK SSLEDVTHST TCAQNPIRAL ARLRRRLSPS bmy_01607T0/1-716 ---------- ----CSRPSK SSLEDVTHST NCAQNPIRAL ARLRRRLSPS BACU003332/1-719 ---------- ----CGRPSK SSLEDVTHST NCAQNPIRAL ARLRRRLSPS 751 800 ENSP00000385357/1-752 RGQASSAHQP QERPM ENSBTAP00000002776/1-639 SGRASPAHQP QERPT ENSTTRP00000001449/1-718 RGQASPAYQP QERPT bmy_01607T0/1-716 RGQASPAYQP QERPM BACU003332/1-719 RGQAGPAYQP QERPT