KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:00 2014 Check: 00 .. Name: ENSP00000305372/1-413 Len: 500 Check: 3627 Weight: 1.00 Name: ENSBTAP00000002779/1-418 Len: 500 Check: 2064 Weight: 1.00 Name: bmy_11266T0/1-500 Len: 500 Check: 7844 Weight: 1.00 Name: ENSTTRP00000007939/1-418 Len: 500 Check: 947 Weight: 1.00 Name: BACU013129/1-418 Len: 500 Check: 3091 Weight: 1.00 // 1 50 ENSP00000305372/1-413 MGQPGNGSAF LLAPNGSHAP DHDVTQERDE VWVVGMGIVM SLIVLAIVFG ENSBTAP00000002779/1-418 MGQPGNRSVF LLAPNASHAP DQNVTLERDE AWVVGMGILM SLIVLAIVFG bmy_11266T0/1-500 MGQPGNGSVF LLAPNGSHAP DQDVTQERNE AWVVGMGIVM SLIVLAIVFG ENSTTRP00000007939/1-418 MGQPGNRSVF LLAPNGSHAP DQDVTQERDE AWVVGMGIVM SLIVLAIVFG BACU013129/1-418 MGQPGNGSVF LLAPNGSHAP DQDVTQERDE VWVVGMGIVM SLIVLAIVFG 51 100 ENSP00000305372/1-413 NVLVITAIAK FERLQTVTNY FITSLACADL VMGLAVVPFG AAHILMKMWT ENSBTAP00000002779/1-418 NVLVITAIAK FERLQTVTNY FITSLACADL VMGLAVVPFG ACHILMKMWT bmy_11266T0/1-500 NVLVITAIAK FERLQTVTNY FITSLACADL VMGLAVVPFG ASHILMKMWT ENSTTRP00000007939/1-418 NVLVITAIAK FERLQTVTNY FITSLACADL LMGLAVVPFG ACHILMKMWA BACU013129/1-418 NVLVITAIAK FERLQTVTNY FITSLACADL VMGLAVVPFG ASHILMKMWT 101 150 ENSP00000305372/1-413 FGNFWCEFWT SIDVLCVTAS IETLCVIAVD RYFAITSPFK YQSLLTKNKA ENSBTAP00000002779/1-418 FGNFWCEFWT SIDVLCVTAS IETLCVIAVD RYLAITSPFK YQCLLTKNKA bmy_11266T0/1-500 FGNFWCEFWT SIDVLCVTAS IETLCVIAVD RYLAITSPFK YQCLLTKNKA ENSTTRP00000007939/1-418 FGNFWCEFWT SIDVLCVTAS IETLCVIAVD RYLAITSPFK YQCLLTKNKA BACU013129/1-418 FGNFWCEFWT SIDVLCVTAS IETLCVIAVD RYLAITSPFK YQCLLTKNKA 151 200 ENSP00000305372/1-413 RVIILMVWIV SGLTSFLPIQ MHWYRATHQE AINCYANETC CDFFTNQAYA ENSBTAP00000002779/1-418 RVVILMVWIV SGLTSFLPIQ MHWYRASHKE AINCYAKETC CDFFTNQPYA bmy_11266T0/1-500 RVVILMVWVV SGLTSFLPIQ MHWYRATHQE AINCYAKETC CDFFTNQAYA ENSTTRP00000007939/1-418 RVVVLMVWVV SGLTSFLPIQ MHWYRATHQE AINCYAKETC CDFFTNQAYA BACU013129/1-418 RVVILMVWVV SGLTSFLPIQ MHWYRATHQE AINCYAKETC CDFFTNQAYA 201 250 ENSP00000305372/1-413 IASSIVSFYV PLVIMVFVYS RVFQEAKRQL QKIDKSEGRF HVQNLSQVEQ ENSBTAP00000002779/1-418 IASSIVSFYL PLVVMVFVYS RVFQVAKRQL QKIDKSEGRF HAQNVSQVEQ bmy_11266T0/1-500 IASSIVSFYL PLVVMVFVYS KVFQVAKRQL QKIDKSEGRF HAQNISQVEQ ENSTTRP00000007939/1-418 IASSIVSFYL PLVVMVFVYS KVFQVAKRQL QKIDKSEGRF HTQNISQMEQ BACU013129/1-418 IASSIVSFYL PLVVMVFVYS KVFQVAKRQL QKIDKSEGRF HAQNISQVEQ 251 300 ENSP00000305372/1-413 DGRTGHGLRR SSKFCLKEHK ALKTLGIIMG TFTLCWLPFF IVNIVHVIQD ENSBTAP00000002779/1-418 DGRSGLGQRR TSKFYLKEHK ALKTLGIIMG TFTLCWLPFF IVNIVHVIKD bmy_11266T0/1-500 DGRSGPGQRR ASKFCLKEHK ALKTLGIIMG TFTLCWLPFF IVNIVHVIQD ENSTTRP00000007939/1-418 DGRSGPGQRR ASKFCLKEHK ALKTLGIIMG TFTLCWLPFF IVNIVHVIQD BACU013129/1-418 DGRSGPGQRR ASKFCLKEHK ALKTLGIIMG TFTLCWLPFF IVNIVHVIQD 301 350 ENSP00000305372/1-413 NLIRKEVYIL LNWIGYVNSG FNPLIYCRSP DFRIAFQELL CLRRSSLKAY ENSBTAP00000002779/1-418 NLIRKEIYIL LNWLGYINSA FNPLIYCRSP DFRIAFQELL CLRRSSLKAY bmy_11266T0/1-500 NLIPKEVYIL LNWVGYVNSA FNPLIYCRSP DFRIAFQELL CRRKSSLKDS ENSTTRP00000007939/1-418 NLIPKEVYIL LNWVGYVNSA FNPLIYCRSP DFRIAFQELL CQRKSSLKAS BACU013129/1-418 NLIPKEVYIL LNWVGYVNSA FNPLIYCRSP DFRIAFQELL CRRKSSLKDS 351 400 ENSP00000305372/1-413 GNGYSSNGN- ----TGEQSG YHVEQEKENK LLCEDLPGTE DFVGHQG--- ENSBTAP00000002779/1-418 GNGCSSNSND RTDYTGEQSG YHLGEEKDSE LLCEDPPGTE NFVNQQG--- bmy_11266T0/1-500 GNGYSSNSNG RTDYPGEQSG YHLGEEKDSE LLCEDPPGTE DFVNRQGVRE ENSTTRP00000007939/1-418 GDGYSSNSNG RTDYPGEQSG YHLGEEKDNE LLCEDLPGTE DFVNRQG--- BACU013129/1-418 GNGYSSNSNG RTDYPGEQSG YHLGEEKDSE LLCEDPPGTE DFVNRQG--- 401 450 ENSP00000305372/1-413 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002779/1-418 ---------- ---------- ---------- ---------- ---------- bmy_11266T0/1-500 YHHKFFEISL SANLKASGEN HKKTRDISAS PKLYFPEKLC IDQMLTFPFR ENSTTRP00000007939/1-418 ---------- ---------- ---------- ---------- ---------- BACU013129/1-418 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000305372/1-413 ---------- --TVPSDNID SQGRNCSTN- -DSL------ ---------L ENSBTAP00000002779/1-418 ---------- --TVPSDSID SQGRNCSTN- -DSL------ ---------L bmy_11266T0/1-500 ISANTACFAK FPTITCDSGT PQGEKATKKG LESFALGEKV ELSQYMTLGL ENSTTRP00000007939/1-418 ---------- --TVPNDNTD SQGRNCSTN- -DSL------ ---------L BACU013129/1-418 ---------- --TVPNDSTD SQGRNCSTN- -DSL------ ---------L