KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:01 2014 Check: 00 .. Name: ENSTTRP00000000876/1-587 Len: 1175 Check: 3610 Weight: 1.00 Name: ENSP00000397655/1-588 Len: 1175 Check: 5372 Weight: 1.00 Name: ENSBTAP00000002787/1-588 Len: 1175 Check: 4082 Weight: 1.00 Name: bmy_20215T0/1-580 Len: 1175 Check: 396 Weight: 1.00 Name: BACU006839/1-1164 Len: 1175 Check: 2070 Weight: 1.00 // 1 50 ENSTTRP00000000876/1-587 ---------- ---------- ---------- ----MDANDD PDEDHLTSYD ENSP00000397655/1-588 ---------- ---------- ---------- ----MDTNDD PDEDHLTSYD ENSBTAP00000002787/1-588 ---------- ---------- ---------- ----MDANDD PDEDHLTSYD bmy_20215T0/1-580 SGLLKAVHFT VNSICGSVAF ADNKNLPLSK LYSVMDANDD SDEDYLTSYD BACU006839/1-1164 --------MS VNSICGSVAF ADNKNLPLSK LYSVMDANDD SDEDYLTSYD 51 100 ENSTTRP00000000876/1-587 VQLSIQESIE ASKTVFYPER FVPLSDQKRK LVEAIKQGHI LELQEYVKYK ENSP00000397655/1-588 IQLSIQESIE ASKTALCPER FVPLSAQNRK LVEAIKQGHI PELQEYVKYK ENSBTAP00000002787/1-588 VQLSIQESIE AGKTVFYPER FVPLSDQNRK LVEAIQQGHI LELQEYVKYK bmy_20215T0/1-580 VQLSIQESTA ASKTVFYPER FVPLSDKTRK LVEAIKQGCI LELQEYVKYK BACU006839/1-1164 VQLSIQESTE ASKTVFYPER FVPLSDQTRK LVEAIKQGCI LELQEYVKYK 101 150 ENSTTRP00000000876/1-587 YALEEADEKG WFPLHEAVVQ PIRQILEVVL DASYKTLWEF KTSDGETPLT ENSP00000397655/1-588 YAMDEADEKG WFPLHEAVVQ PIQQILEIVL DASYKTLWEF KTCDGETPLT ENSBTAP00000002787/1-588 YALDEADEKG WFPLHEAVVQ PIQQILEVVL DASYKTLWEF KTSDGETPLT bmy_20215T0/1-580 YALDEADEKG WFPLHEAVVQ PIRQILEVVL DASYKTLWEF KTSDGETPLT BACU006839/1-1164 YALDEADEKG WFPLHEAVVQ PIRQILEVVL DASYKTLWEF KTSDGETPLT 151 200 ENSTTRP00000000876/1-587 LAVKAGLVEN VRTLLEKGVC PNTKNDKGET PLLLAVKMGS YDMVSALL-H ENSP00000397655/1-588 LAVKAGLVEN VRTLLEKGVW PNTKNDKGET PLLIAVKKGS YDMVSTLIKH ENSBTAP00000002787/1-588 LAVKAGLVEN VRTLLEKGVW PNTKNDKGET PLLLAIKRGS YDMVSALLKH bmy_20215T0/1-580 LAVKACLVEN VRTLLEKGVW PNTKNDKGET PLLLAVKKGS YDMVSALLQH BACU006839/1-1164 LAVKAGLVEN VRTLLEKGVW PNTKNDKGET PLLLAVKKGS YDMVSVLLQH 201 250 ENSTTRP00000000876/1-587 HTSLDQPCVK QWSAMHEAAX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000397655/1-588 NTSLDQPCVK RWSAMHEAAK QGRKDIVALL LKHGGNVHLR DGFGVTPLGV ENSBTAP00000002787/1-588 NTSLDQPCVK RWSAMHEAAK QGHKDIIALL LNNGGNVHLK DGFGVTPLGV bmy_20215T0/1-580 HTSLDQPCVK QWSAMHEAAK QGRKDIIALL LNHGGNVHLR DRFGVTPLGV BACU006839/1-1164 HTSLDQPCVK QWSAMHEAAK QGRKDIIALL LNHRGNVHLR DRFGVTPLGV 251 300 ENSTTRP00000000876/1-587 XXXXXXXXXX XXXXXXXGDV FALADDGASV LFEAAGGGNP DCISLLLEYG ENSP00000397655/1-588 AAEYGHCDVL EHLIHKGGDV LALADDGASV LFEAAGGGNP DCISLLLEYG ENSBTAP00000002787/1-588 AAEYGHCDVL EHLIHKGGDV LALADDGASV LFEAAGGGNP DCISLLLEYG bmy_20215T0/1-580 AAEYGHCDVL EHLIHKGSLK HKLWL----- ---------- -VVSVEL--- BACU006839/1-1164 AAEYGHCDVL EHLIHKGGDV LALADDGASV LFEAAGGGNP DCVSLLLEYG 301 350 ENSTTRP00000000876/1-587 GSGNIPNKAG HLPIHRAAYE GHYLALKYLI PVTSKHAIQK SGLTPVHSAA ENSP00000397655/1-588 GSGNVPNRAG HLPIHRAAYE GHYLALKYLI PVTSKNAIRK SGLTPIHSAA ENSBTAP00000002787/1-588 GSGNIPNRAG HLPIHRAAYE GHYLALKYLI PVTSKHAIQK SGLTPIHSAA bmy_20215T0/1-580 ---------- ---------- ---IALKYLI PVTSKHAIQK SGLTPIHSAT BACU006839/1-1164 GSGNIPNRAG HLPIHRAAYE GHYLALKYLI PVTSKHAIQK SGLTPIHSAT 351 400 ENSTTRP00000000876/1-587 DGQNAQCLEL LIENGFDVNT LLADHISKSY DDERKTALYF AVCNNDIHCT ENSP00000397655/1-588 DGQNAQCLEL LIENGFDVNT LLADHISQSY DDERKTALYF GVSNNDVHCT ENSBTAP00000002787/1-588 DGQNAQCLEL LIENGFDVNS LLADHISESY DDERKTALYF AVCNNDILCT bmy_20215T0/1-580 DGQNAQCLEL LIENGFDVNT LLADHISKSY DDERKTAXYF AVCNNDIHCI BACU006839/1-1164 DGQNAQCLEL LIENGFDVNT LLADHISKSY DDERKTALYF AVCNNDIHCI 401 450 ENSTTRP00000000876/1-587 EVLLAAGADP NLDPLNCLLV AVRANNHEIV RLLLAHGANV NCYFMHVNDT ENSP00000397655/1-588 EVLLAAGADP NLDPLNCLLV AVRANNYEIV RLLLSHGANV NCYFMHVNDT ENSBTAP00000002787/1-588 EILLAAGADP NLDPLNCLLV AVRANNHEIV RLLLAHGANV NCYFMHVNDT bmy_20215T0/1-580 EVLLAAGADP NLDPLNCLLV AVRANNHEIV RLLLAHGADV NCYFRHVNDT BACU006839/1-1164 EVLLAAGADP NLDPLNCLLV AVRANNHEIV RLLLAHGADV NCYFRHVNDT 451 500 ENSTTRP00000000876/1-587 HFPSAIQYAL NDEVMLRLLL NNGYQVEMCF DCMHGDIFGN SFVWSEIEEE ENSP00000397655/1-588 RFPSVIQYAL NDEVMLRLLL NNGYQVEMCF DCMHGDIFGN SFVWSEIQEE ENSBTAP00000002787/1-588 RFPSAIQYAL NDEVMLRLLL NNGYQVEMCF ECMHGDIFGN SFVWSEIEEE bmy_20215T0/1-580 HFPSAIQYAL NDEVMLRLLL NNGYQVEMCF DCMHGDIFGN STVWSEIEEE BACU006839/1-1164 HFPSAIQYAL NDEVMLRLLL NNGYQVEMCF DCMHGDIFGN ATVWSEIEEE 501 550 ENSTTRP00000000876/1-587 ILPGWTSCVV KDNPFCEFIT VPWMKHLVGR VIRVLMDYMD YIPLCAKLKS ENSP00000397655/1-588 VLPGWTSCVI KDNPFCEFIT VPWMKHLVGR VTRVLIDYMD YVPLCAKLKS ENSBTAP00000002787/1-588 VLPGWTSCVI KDNPFCEFIT VPWMKHLVGS VIRVLIDYMD YIPLCAKLKS bmy_20215T0/1-580 VLPRWISCVV KDNPFCEFIT VPWMKHLVGS VIRVLMDYMD YIPLCAKLKS BACU006839/1-1164 VLPRWMSCVV KDNPFCEFIT VPWMKHLVGR VIRVLMDYMD YIPLCVKLKS 551 600 ENSTTRP00000000876/1-587 ALEVQREWPE IRQILENPCS LKHLCR---- ---------- ---------- ENSP00000397655/1-588 ALEVQREWPE IRQILENPCS LKHLCR---- ---------- ---------- ENSBTAP00000002787/1-588 ALEVQREWPE IRQILENPCS LKHLCR---- ---------- ---------- bmy_20215T0/1-580 ALEVQREWPE IRQXLENPCS LKHLCR---- ---------- ---------- BACU006839/1-1164 ALEVQREWPE IRQILACTTT LKRLSQALPA PVANQPTYLL PLPAAGCLEC 601 650 ENSTTRP00000000876/1-587 ---------- ---------- ---------- ---------- ---------- ENSP00000397655/1-588 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002787/1-588 ---------- ---------- ---------- ---------- ---------- bmy_20215T0/1-580 ---------- ---------- ---------- ---------- ---------- BACU006839/1-1164 LVYRAPCGSD RAGTMSTFGY RRGLSKYESI DEDELLASLS AEELKELERE 651 700 ENSTTRP00000000876/1-587 ---------- ---------- ---------- ---------- ---------- ENSP00000397655/1-588 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002787/1-588 ---------- ---------- ---------- ---------- ---------- bmy_20215T0/1-580 ---------- ---------- ---------- ---------- ---------- BACU006839/1-1164 LEDIEPDHSL PVGMRQKSLT EKTPTGTFSR EALMAYWEKE SQKLLEKERL 701 750 ENSTTRP00000000876/1-587 ---------- ---------- ---------- ---------- ---------- ENSP00000397655/1-588 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002787/1-588 ---------- ---------- ---------- ---------- ---------- bmy_20215T0/1-580 ---------- ---------- ---------- ---------- ---------- BACU006839/1-1164 GECGKVAEED KEESEEELIF TESNSEVSEE VYTEEEAENE EDEEEDEEEE 751 800 ENSTTRP00000000876/1-587 ---------- ---------- ---------- ---------- ---------- ENSP00000397655/1-588 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002787/1-588 ---------- ---------- ---------- ---------- ---------- bmy_20215T0/1-580 ---------- ---------- ---------- ---------- ---------- BACU006839/1-1164 EDSEGEERTI ENEKGMNGSV HYGSVSSDSS RPETFKSQIE NIHLTNGHSG 801 850 ENSTTRP00000000876/1-587 ---------- ---------- ---------- ---------- ---------- ENSP00000397655/1-588 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002787/1-588 ---------- ---------- ---------- ---------- ---------- bmy_20215T0/1-580 ---------- ---------- ---------- ---------- ---------- BACU006839/1-1164 RNTESPAAIH PCGNPTVIED ALEKVKSNDP DTTEVNLNNI ENITSQTLTR 851 900 ENSTTRP00000000876/1-587 ---------- ---------- ---------- --LRI----- ---------- ENSP00000397655/1-588 ---------- ---------- ---------- --LKI----- ---------- ENSBTAP00000002787/1-588 ---------- ---------- ---------- --LKI----- ---------- bmy_20215T0/1-580 ---------- ---------- ---------- --LRI----- ---------- BACU006839/1-1164 FAEALKANTV VKTFSLANTR ADDSVATAIA EMLRVNRHVT SVNIESNFIT 901 950 ENSTTRP00000000876/1-587 ---------- ---------- -----RRLMG ---------- ------LQRL ENSP00000397655/1-588 ---------- ---------- -----RRLMG ---------- ------LQKL ENSBTAP00000002787/1-588 ---------- ---------- -----RRLMG ---------- ------LQRL bmy_20215T0/1-580 ---------- ---------- -----RRLMG ---------- ------LQRL BACU006839/1-1164 GRGILAITRA LQHNPVLAEL RFHNQRHIMG SQVEMEIVKL LRDNTTLLRL 951 1000 ENSTTRP00000000876/1-587 C--------- ---------- ---------- ---------- ---------- ENSP00000397655/1-588 C--------- ---------- ---------- ---------- ---------- ENSBTAP00000002787/1-588 C--------- ---------- ---------- ---------- ---------- bmy_20215T0/1-580 C--------- ---------- ---------- ---------- ---------- BACU006839/1-1164 GYHFELPGPR MSMTSLLTRN MDKQRQKRMQ EQKQQEGYEA GANLRTKVWR 1001 1050 ENSTTRP00000000876/1-587 ---------- ---------- ---------- ---------- --------QP ENSP00000397655/1-588 ---------- ---------- ---------- ---------- --------QP ENSBTAP00000002787/1-588 ---------- ---------- ---------- ---------- --------QP bmy_20215T0/1-580 ---------- ---------- ---------- ---------- --------QP BACU006839/1-1164 RGTPGSSPLA SPRPSPRSSP KLPKKVQIVR SRPPSPVAPS PPPPPPPPPP 1051 1100 ENSTTRP00000000876/1-587 ALMEKLSLPP T--------- ---IQRYI-- ---------- ---------- ENSP00000397655/1-588 ASVEKLPLPP A--------- ---IQRYI-- ---------- ---------- ENSBTAP00000002787/1-588 TLMEKLSLPP T--------- ---IQRYI-- ---------- ---------- bmy_20215T0/1-580 ASMEKLSLPP T--------- ---IQRYI-- ---------- ---------- BACU006839/1-1164 LPPQRLPLPP PPPPPPPLPE KKLITRNIAE VIKQQESAQR ALQNGQKKKK 1101 1150 ENSTTRP00000000876/1-587 ---------- LFKEY----- ---------- ---------- ---------- ENSP00000397655/1-588 ---------- LFKEY----- ---------- ---------- ---------- ENSBTAP00000002787/1-588 ---------- LFKEY----- ---------- ---------- ---------- bmy_20215T0/1-580 ---------- LFKEY----- ---------- ---------- ---------- BACU006839/1-1164 GKKAKKQPNS ILKESRNSLR SVQEKKMEDS SQPSTPQRSV HENLMEAIRG 1151 1200 ENSTTRP00000000876/1-587 ---------- -----DLYGQ ELKLP ENSP00000397655/1-588 ---------- -----DLYGQ ELKLT ENSBTAP00000002787/1-588 ---------- -----DLYGQ ELNLP bmy_20215T0/1-580 ---------- -----DLYGQ ELKLP BACU006839/1-1164 SSMRQLKRII AGVLTHLRGR EL---