KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:19:10 2014 Check: 00 .. Name: ENSP00000324672/1-402 Len: 403 Check: 5335 Weight: 1.00 Name: ENSBTAP00000002834/1-352 Len: 403 Check: 9010 Weight: 1.00 Name: bmy_14654T0/1-359 Len: 403 Check: 5529 Weight: 1.00 Name: BACU009143/1-362 Len: 403 Check: 689 Weight: 1.00 // 1 50 ENSP00000324672/1-402 MASLGLLLLL LLTALP-PLW SSSLPGLDTA ESKATIADLI LSALERATVF ENSBTAP00000002834/1-352 MSSPGLRLLL LLLAAP-PLQ PSWLPPPDTP EGKATITGFI LSALDRATSF bmy_14654T0/1-359 MSSPGLLLLL LLLLAPRPLQ PSLLPPPDTP EGKATITGLI LSALERATSF BACU009143/1-362 MSSPGLLLLL LLLLAPRPLQ PSLLPPLDTP EGKATIMGLI LSALERATSF 51 100 ENSP00000324672/1-402 LEQRLPEINL DGMVGVRVLE EQLKSVREKW AQEPLLQPLS LRVGMLGEKL ENSBTAP00000002834/1-352 LKKRLPEINL DGVVGFRMLE VQLRGVQEKW ALDSQLQPLS LRVGKLVEKL bmy_14654T0/1-359 LKKRLPEINL DGVVGFRVLE VQLKGVQEKW AQDPQVQPLG LRAGKLAEKL BACU009143/1-362 LKKRLPEINL DGVVGFRVLE VQLKSVQEKW ARDPQVQPLG LRAGKLAEKL 101 150 ENSP00000324672/1-402 EAAIQRSLHY LKLSDPKYLR EFQLTLQPGF WKLPHAWIHT DASLVYPTFG ENSBTAP00000002834/1-352 APLLHDSIFY LNLSDPEYLR QFQLTIEPGF WKLPHAWTRT ESSMVYPTFE bmy_14654T0/1-359 APLLHRSIFY LNLSDPKYLR EFQPAIEPGF WKLPHVWIRT KASMVYATSE BACU009143/1-362 APLLHRSIFY LNLSDPKYLR EFQPTIEPGF WKLPHIWTRT RASMVYSTFE 151 200 ENSP00000324672/1-402 PQDSFSEERS DVCLVQLLGT GTDSSEPCGL SDLCRSLMTK PGCSGYCLSH ENSBTAP00000002834/1-352 QEDSFSEELS DLCLVQLLGT GTNSSQPCRL SNFCRSLMTR PGCSGYCLSH bmy_14654T0/1-359 QQGSFSEEHS DLCLVQLLGA GTNSSQPCRL SDFCKTLMTR PGCSGYCLSH BACU009143/1-362 QQDPFSEEHS DLCLVQLLGT GTNSSQPCRL SDFCKTLMTR PGCSGYCLSH 201 250 ENSP00000324672/1-402 QLLFFLWARM RGCTQGPLQQ SQDYINLFCA NMMDLNRRAE AIGYAYPTRD ENSBTAP00000002834/1-352 QLLFFLSARM RGCTKGLFRQ SQRYMNVFCA NMMDLNRRAD AIGYAYPTRD bmy_14654T0/1-359 QLLFFLSARM RGCTKGLFRQ SQHYMNLFCA NMMDLNRRAE AIGYAYPTRD BACU009143/1-362 QLLFFLSARM RGCTKGLFRQ SQRYMNLFCA NMMDLNRRAE AIGYAYPTRD 251 300 ENSP00000324672/1-402 IFMENIMFCG MGGFSDFYKL RWLEAILSWQ KQQEGCFGEP DAEDEELSKA ENSBTAP00000002834/1-352 IFMENIVFCG MSGFSDFYKL RWLQAILSWQ KPQEGCFGEP AAEDEELPKA bmy_14654T0/1-359 LFMENIMFCG IGGFSDFYKL RWLEAILSWQ KPQEGCFGKP ---DEELPKA BACU009143/1-362 LFMENIMFCG IGGFSDFYKL RWLEAILSWQ KPQEGCFGKP AAEDEELPKA 301 350 ENSP00000324672/1-402 IQYQQHFSRR VKRREKQFPD SRSVAQAGVQ WRNLGSLQPL PPGFKQFSCL ENSBTAP00000002834/1-352 IQYQQHFLRR VKRREKQFAD GCSSHNTAMA VAALG----- --GFLYILAE bmy_14654T0/1-359 IQYQQHLLRR VKRXEKQFTD GCSSHNTAMA VAALG----- --GFISVLAE BACU009143/1-362 IQYQQHLLRR VKRREKQFTD GCSSHNTAMA VAALG----- --GFISILAE 351 400 ENSP00000324672/1-402 ILPSSWDYRS VPPYLANFYI FLVETGFHHV AHAGLELLIS RDPPTSGSQS ENSBTAP00000002834/1-352 YPPAEGKLRP ---------- ---------- ---------- ---------- bmy_14654T0/1-359 LPPADGELRP PTP------- ---------- ---------- -TPPSSH--- BACU009143/1-362 LPPADGELRP PTP------- ---------- ---------- -TPPSSH--- 401 450 ENSP00000324672/1-402 VGL ENSBTAP00000002834/1-352 --- bmy_14654T0/1-359 --- BACU009143/1-362 ---