KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:14 2014 Check: 00 .. Name: ENSP00000360031/1-1297 Len: 1406 Check: 680 Weight: 1.00 Name: ENSTTRP00000009371/1-1288 Len: 1406 Check: 4451 Weight: 1.00 Name: ENSBTAP00000002844/1-1236 Len: 1406 Check: 6840 Weight: 1.00 Name: bmy_11417T0/1-1397 Len: 1406 Check: 5789 Weight: 1.00 Name: BACU012436/1-1323 Len: 1406 Check: 6090 Weight: 1.00 // 1 50 ENSP00000360031/1-1297 MGRSGKLPSG VSAKLKRWKK GHSSDSNPAI CRHRQAARSR FFSRPSGRSD ENSTTRP00000009371/1-1288 MGRSGKLPSG VSAKLKRWKK GHSSDSNPAI SRHRQAARSR FFSRPSGKSD ENSBTAP00000002844/1-1236 MGRSGKLPSG VSAKLKRWKK GHSSDSNPVI CRHRQAARSR FFSRPSGKSD bmy_11417T0/1-1397 MGRSGKLPSG VSAKLKRWKK GHSSDSNPAI SRHRQAARSR FFSRPSGKSD BACU012436/1-1323 MGRSGKLPSG VSAKLKRWKK GHSSDSNPAI SRHRQAARSR FFSRPSGKSD 51 100 ENSP00000360031/1-1297 LTVDAVKLHN ELQSGSLRLG KSEAPETPM- -EEEAELVLT EKSSGTFLSG ENSTTRP00000009371/1-1288 LTVDAVKLHN ELQSGSLRLG KSEAPETAM- EEEEVGPALT EKSSGTFLSG ENSBTAP00000002844/1-1236 LTVDAVKLHN ELQSGSLRLG KSEAPETAME EEEEVTPAFT EKSSGTFLSG bmy_11417T0/1-1397 LTVDAVKLHN ELQSGSLRLG KSEAPETAM- EEEEVAPALT EKSSGTFLSG BACU012436/1-1323 LTVDAVKLHN ELQSGSLRLG KSEAPETAM- EEEEVAPALT EKSSGTFLSG 101 150 ENSP00000360031/1-1297 LSDCTNVTFS KVQRFWESNS AAHKEICAVL AAVTEVIRSQ GGKETETEYF ENSTTRP00000009371/1-1288 LSDCTNVTFS KVQRFWESSS AAHKEICAVL AAVTEVIRSQ GGKETETEYF ENSBTAP00000002844/1-1236 LSDCTNVTFS KVQRFWESNS AAHKEICAVL AAVTEVIRSQ GGKETETEYF bmy_11417T0/1-1397 LSDCTNVTFS KVQRFWESSS AAHKEICAVL AAVTEVIRSQ GGKETETEYF BACU012436/1-1323 LSDCTNVTFS KVQRFWESSS AAHKEICAVL AAVTEVIRSQ GGKETETEYF 151 200 ENSP00000360031/1-1297 AALMTTMEAV ESPESLAAVA YLLNLVLKR- -VPSPVLIKK FSDTSKAFMD ENSTTRP00000009371/1-1288 AALXXXXXXX XXXXXXXXXX XXXXXXXXX- -VPS-VLIKK FSDTSK-FMD ENSBTAP00000002844/1-1236 AAL------- ---------- ---------- ---------- ---------- bmy_11417T0/1-1397 AALMTTMEAV ESAESLAAVA YLLNLVLKR- -VPSPVLIKK FSDTSKAFMD BACU012436/1-1323 AALMSTMEAV ESAESLAAVA YLLKAVSPGS FVPSPVLIKK FSDTSKAFMD 201 250 ENSP00000360031/1-1297 IMSAQASSGS TSVLRWVLSC LATLLRKQDL EAWGYPVTLQ VYHGLLSFTV ENSTTRP00000009371/1-1288 IMS-QASSGS TSALRWVLSC LATLLRKQDL EAWSYPVTLQ VYHGLLSFTV ENSBTAP00000002844/1-1236 ---------- ------VLSC LATLLRKQDL EAWSFPVTLQ VYHGLLSFTV bmy_11417T0/1-1397 IMSTQASSGS TSALRWVLSC LATLLRKQDL EAWSYPVTLQ VYHGLLSFTV BACU012436/1-1323 IMSAQASSGS TSALRWVLSC LATLLRKQDL EAWSYPVTLQ VYHGLLSFTV 251 300 ENSP00000360031/1-1297 HPKPKIRKAA QHGVCSVLKG SEFMF-EKAP AHHPAAISTA KFCIQEIEKS ENSTTRP00000009371/1-1288 HPKPKIRKAA QHGVCSVLKG SEFMFGEKAP AHHPAAMSTA KFCIQEIEKS ENSBTAP00000002844/1-1236 HTKPKIRRAA QHGVCSILKG SEFMFGEKAP AHHPAAISTA KFCIQEIEKS bmy_11417T0/1-1397 HTKPKIRKAA QHGVCSVLKG SEFMFGEKAP AHHPAAMSTA KFCIQEIEKS BACU012436/1-1323 HTKPKIRKAA QHGVCSVLKG SEFMFGEKAP AHHPAAMSTA KFCIQEIEKS 301 350 ENSP00000360031/1-1297 GGSKEATTTL HMLTLLKDLL PCFPEGLVKS CSETLLRVMT LSHVLVTACA ENSTTRP00000009371/1-1288 GGSKEATTTL HMLTLLKDLL PCFPDSLVKS CSETLLRVMT LSHVLVTACA ENSBTAP00000002844/1-1236 GGSKEATTML HMLTLLKDLL PCFPEGLVKS CSETLLRVMT LNHVLVTACA bmy_11417T0/1-1397 GGSKEATTTL HMLTLLKDLL PCFPDGLVKS CSETLLRVMT LSHVLVTACA BACU012436/1-1323 GGSKEATTTL HMLTLLKDLL PCFPDGLVKS CSETLLRVMT LSHVLVTACA 351 400 ENSP00000360031/1-1297 MQAFHSLFHA RPGLSTLSAE LNAQIITALY DYVPSENDLQ PLLAWLKVME ENSTTRP00000009371/1-1288 MQAFHSLFHA KPSPGTLPAE LNAQIITALY DYVPSENDLQ PLLAWLKVME ENSBTAP00000002844/1-1236 MQAFHSLFHA KPRASTLPAE LNAQIITALY DYVPSENDLQ PLLAWLKVME bmy_11417T0/1-1397 MQAFHSLFHA KPSXGTLPAE LNAQIITALY DYVPSENDLQ PLLAWLKVME BACU012436/1-1323 MQAFHSLFHA KPSPGTLPAE LNAQIITALY DYVPSENDLQ PLLAWLKVME 401 450 ENSP00000360031/1-1297 KAHINLVRLQ WDLGLGHLPR FFGTAVTCLL SPHSQVLTAA TQSLKEILKE ENSTTRP00000009371/1-1288 KAHINLVRLH RDLGLGHLPR LFGTATTCLL SPHSQVVTAA TQCLQEILKE ENSBTAP00000002844/1-1236 KAHINLVRLH RDLGLGHLPR FFGTATTCLL SPHLPVVTAA TQCLQEILKE bmy_11417T0/1-1397 KAHINLVRLH RDLGLGHLPR FFGTATTCLL SPHSQVVTAA TQCLQEILKE BACU012436/1-1323 KAHINLVRLH RDLGLGHLPR FFGTATTCLL SPHLQVVTAA TQCLQEILKE 451 500 ENSP00000360031/1-1297 CVAPHMADIG SVTSSASGPA QSVAKMFRAV EEGLTYKFHA AWSSVLQLLC ENSTTRP00000009371/1-1288 CVAPHMADIG SVTSSASGPA QYVAKMFRAV EEGLTYRFHA SWSSVLQLLC ENSBTAP00000002844/1-1236 CVAPHMADIG SVTSSASGPS QCIAKMFRAV EEGLTYRFHA AWSSVLQLLC bmy_11417T0/1-1397 CVAPHMADIG SVTSSASGPA QYVAKMFRAV EEGLTYRFHA SWSSVLQLLC BACU012436/1-1323 CVAPHMADIG SVTSSASGPA QYVAKMFRAV EEGLTYRFHA SWSSVLQLLC 501 550 ENSP00000360031/1-1297 VFFEACGRQA HPVMRKCLQS LCDLRLSPHF PHTAALDQAV GAAVTSMGPE ENSTTRP00000009371/1-1288 VFFEACGRQA HPVMRKCLQS LCDLRLSPYS PHMAALDRAV GAAVASMGPE ENSBTAP00000002844/1-1236 VFFEACGRQA HPVMKKCLQS LCDLRLSPHF PHTAALDRAV GAAVASMGPE bmy_11417T0/1-1397 VFFEACGRQA HPVMRKCLQS LCDLRLSPYS PRTAAVDRAV GAAVASMGPE BACU012436/1-1323 VFFEACGRQA HPVMRKCLQS LCDLRLSPYS PHTAAVDRAV GAAVASMGPE 551 600 ENSP00000360031/1-1297 VVLQAVPLEI DGSEETLDFP RSWLLPVIRD HVQETRLGFF TTYFLPLANT ENSTTRP00000009371/1-1288 VVLEAVPLEI DGSEETLDFP RSWLLPVIRD HVRETRLGFF TAYFLPLATT ENSBTAP00000002844/1-1236 VVLEAVPLEI DGSEETLDFP RSWLLPVIRD HVRETRLGFF TAYFLPLATT bmy_11417T0/1-1397 VVLEAVPLEI DGSEETLDFP RSWLLPVVRD HVRETRLGFF TAYFLPLATT BACU012436/1-1323 VVLEAVPLEI DGSEETLDFP RSWLLPVVRD HVRETRLGFF TAYFLPLATT 601 650 ENSP00000360031/1-1297 LKSKAMDLAQ AGSTVESKIY DTLQWQMWTL LPGFCTRPTD VAISFKGLAR ENSTTRP00000009371/1-1288 LKRKAMDLAQ AGSTVESKIY DTLQWQIWTL LPGFCTRPTD VATAFKGLAR ENSBTAP00000002844/1-1236 LKRKAMDLAQ AGSTVESKIY DTLQWQIWTL LPGFCTRPTD VATAFKGLAR bmy_11417T0/1-1397 LKRKAMDLAQ AGSTVESKIY DTLQWQIWTL LPGFCTRPTD VATAFKGLAR BACU012436/1-1323 LKRKAMDLAQ AGSTVESKIY DTLQWQIWTL LPGFCTRPTD VATAFKGLAR 651 700 ENSP00000360031/1-1297 TLGMAISERP DLRVTVCQAL RTLITKGCQA ---------- ---------- ENSTTRP00000009371/1-1288 TLGTAISERP DLRVTVCQAL RTLITKGCEA ---------- ---------- ENSBTAP00000002844/1-1236 TLGTAISERP DLRVTVCQAL RSLVTKGCEA ---------- ---------- bmy_11417T0/1-1397 TLGTAISERP DLRVTVCQAL RTLITKGCEA GPPKECLWAA TTVAFEAGSS BACU012436/1-1323 TLGTAISERP DLRVTVCQAL RTLITKGCEA ---------- ---------- 701 750 ENSP00000360031/1-1297 ---------- --EADRAEVS RFAKNFLPIL FNLYGQPVAA GDTPAPRRAV ENSTTRP00000009371/1-1288 ---------- --EADRAEVS RFAKNFLPIL FNLYGQPVAA GDTPAPRRAV ENSBTAP00000002844/1-1236 ---------- --EADRAEVS RFAKNFLPIL FNLYGQPTAA GDTPAPRRAV bmy_11417T0/1-1397 PGPFVQTLVL LPEADRAEVS RFAKNFLPIL FNLYGQPVAA GDTPAPRRAV BACU012436/1-1323 ---------- --EADRAEVS RFAKNFLPIL FNLYGQPVAA GDTPAPRRAV 751 800 ENSP00000360031/1-1297 LETIRTYLTI TDTQLVNSLL EKASEKVLDP ASSDFT---- ---------- ENSTTRP00000009371/1-1288 LETIKTYLTI TEPQLVNGFL EKASEKVLDP ASSDFT---- ---------- ENSBTAP00000002844/1-1236 LETIKTYLTI TEPQLVNSFL EKASEKVLDA SSSDFT---- ---------- bmy_11417T0/1-1397 LETIKTYLTI TEPQLVNGFL EKASEKVLDP ASSDFTSRHE DTDSPCPSPA BACU012436/1-1323 LETIKTYLTI TEPQLVNGFL EKASEKVLDP ASSDFTSRHE DTDSTCPSPA 801 850 ENSP00000360031/1-1297 ---------- --RLSVLDLV VALAPCADEA AISKLYSTIR PYLESKAHGV ENSTTRP00000009371/1-1288 ---------- --RLSVLDLV VALAPHADEA AISKLYSTIR PYLESKAHGV ENSBTAP00000002844/1-1236 ---------- --RLSVLDLV VALAPHADEA AISKLYSTIR PYLESKTHGI bmy_11417T0/1-1397 STKLLLGLLS LSRLSVLDLV VALAPHADEA AISKLYSTIR PYLESKAHGV BACU012436/1-1323 STKLLLGLLS LSRLSVLDLV VALAPHADEA AISKLYSTIR PYLESKAHGV 851 900 ENSP00000360031/1-1297 QKKAYRVLEE VCASPQGPGA LFVQSHLEDL KKTLLDSLRS TSSPAKR--- ENSTTRP00000009371/1-1288 QKKAYRVLEE VCASPQGPGA RFVQSHLDDL KKTLLDSLRS TSSPAKR--- ENSBTAP00000002844/1-1236 QKKAYRVLEE VCASPQGPGA RFVQSHLDDL KKTLLDSLRS TSSPAKR--- bmy_11417T0/1-1397 QKKAYRVLEE VCASPQGPGA RFVQSHLDDL KKTLLDSLRS TSSPAKRVRT BACU012436/1-1323 QKKAYRVLEE VCASPQGPGA RFVQSHLDDL KKTLLDSLRS TSSPAKR--- 901 950 ENSP00000360031/1-1297 ---------- ---------- ---------- ---------- --PRLKCLLH ENSTTRP00000009371/1-1288 ---------- ---------- ---------- ---------- --PRLKCLIH ENSBTAP00000002844/1-1236 ---------- ---------- ---------- ---------- --PRLKCLIH bmy_11417T0/1-1397 PGAPLCPRGD ERHQERTSVE TLRDFRGGGG IEGPDCCPPV PQPRLKCLIH BACU012436/1-1323 ---------- ---------- ---------- ---------- --PRLKCLIH 951 1000 ENSP00000360031/1-1297 IVRKLSAEHK EFITALIPEV ILCTKEVSVG ARKNAFALLV EMGHAFLRFG ENSTTRP00000009371/1-1288 IVRKLSAEHE EFISALVPEV ILCTKEVSVG ARKNAFALLV EMGHAFLRFG ENSBTAP00000002844/1-1236 VVKKLSAEHE EFISALVPEV ILCTKEVSVG ARKNAFALLV EMGHAFLRFG bmy_11417T0/1-1397 IVRKLSAEHE EFISALVPEV ILCTKEVSVG ARKNAFALLV EMGHAFLRFG BACU012436/1-1323 IVRKLSAEHE EFISALVPEV ILCTKEVSVG ARKNAFVLLV EMGHAFLRFG 1001 1050 ENSP00000360031/1-1297 SNQEEALQCY LVLIYPGLVG AVTMVSCSIL ALTHLLFEFK GLMGTSTVEQ ENSTTRP00000009371/1-1288 PDPAEALQRY LVLIYPGLVG AVTMVSCSIL ALTHLLFEFK GLMGASTMEQ ENSBTAP00000002844/1-1236 PNQEEALQRY LILIYPGLVG AVTMVSCSIL ALTHLLFEFK GLMGTSTVEQ bmy_11417T0/1-1397 PNPAEALQRY LVLIYPGLVG AVTMVSCSIL ALTHLLFQFK GLMGTSTMEQ BACU012436/1-1323 PNPAEALQRY LVLIYPGLVG AVTMVSCSIL ALTHLLFQFK GLMGTSTMEQ 1051 1100 ENSP00000360031/1-1297 LLENVCLLLA SRTRDVVKSA LGFIKVAVTV MDVAHLAKHV QLVMEAIGKL ENSTTRP00000009371/1-1288 LLENV-LLLA SRTRDVVRSA LGFIKVSMVV MDMAHLAKHV QLVMGAIGKL ENSBTAP00000002844/1-1236 LLENVCLLLA SRTRDVVKSA LGFIKVAVVV MDVAHMAKHV QLVMEAIGKL bmy_11417T0/1-1397 LLENVCLLLA SRTRDVVRSA LGFIKVAVVV MDVAHLAKHV QLVMGAIGKL BACU012436/1-1323 LLENVCLLLA SRTRDVVRSA LGFIKVAVVV MDVAHLAKHV QLVMGAIGKL 1101 1150 ENSP00000360031/1-1297 SDDMRRHFRM KLRNLFTKFI RKFGFELVKR LLPEEYHRVL VNIRKAEARA ENSTTRP00000009371/1-1288 SDDMRRHFRM KLRNLFTKFI RKFGFELMR- LLPEEYQKVL -DFWKAESWA ENSBTAP00000002844/1-1236 SDDMRRHFRM KLRNLFTKFI RKFGFELVKK LLPEEYHKVL VNIRKAESRA bmy_11417T0/1-1397 SDDMRRHFRM KLRNLFTKFI RKFGFELVRK LLPEEYQKVL VNIRKAEARA BACU012436/1-1323 SDDMRRHFRM KLRNLFTKFI RKFGFELVRK LLPEEYQKVL VNIRKAEARA 1151 1200 ENSP00000360031/1-1297 KRHRALSQAA VEEEEEEEEE EEPAQGKGDS IEEILADSED EEDNEEEERS ENSTTRP00000009371/1-1288 RKQRALS-AA V---EEEVEE EELSWGKGDS IEEILADSED EED-EEEERS ENSBTAP00000002844/1-1236 KKHRALNQAA V--EEEEEEE EEPVQGKGDS IEEILADSED EED-EEEERS bmy_11417T0/1-1397 KKHRALNQAA V---EEEEEE EEPVQGKGDS IEEILADSED EED-EEEERS BACU012436/1-1323 KKHRALNQAA V---EEEEEE EEPVQGKGDS IEEILADSED EED-EEEERS 1201 1250 ENSP00000360031/1-1297 RGKEQRKLAR QRSRAWLKEG GGDEPLNFLD PKVAQRVLAT QPGPGRGRKK ENSTTRP00000009371/1-1288 RGKEQQRLAR QRGRAWLKEG GGDEPLNFLD PKVAQRVLAT QPGPGRGKKK ENSBTAP00000002844/1-1236 RGKEQRRLAR QRSRAWLKEG GGDEPLNFLD PKVAQRVLAT QPGPGRGKKK bmy_11417T0/1-1397 RGKEQQRLAR HRSRAWLKEG GGDEPLNFLD PKVAQRVLAT QPGPGRG-KK BACU012436/1-1323 RGKEQQRLAR HRSRAWLKEG GGDEPLNFLD PKVAQRVLAT QPGPGRGKKK 1251 1300 ENSP00000360031/1-1297 DHGFKVSADG RLIIREEADG N-KMEEEEGA KGEDEEMADP MEDVIIRNKK ENSTTRP00000009371/1-1288 DHGFKVSADG RLIIREEEDG DAKMEEEEGA KGEDEEMADL MEDVGIRSKK ENSBTAP00000002844/1-1236 DHGFKVSADG RLIIREEEDA NTKMEEEEGA KGEDEEMGDL MEDVGVKSKK bmy_11417T0/1-1397 DHGFKVSADG RLIIREEEDD NAKLEEEEGA KGEDEEMADL MEDVGVRSKK BACU012436/1-1323 DHGFKVSADG RLIIREEEDD NAKLEEEEGA KGEDEEMADL MADVGVRSKK 1301 1350 ENSP00000360031/1-1297 HQKLKHQKEA EEEELEIPPQ YQAGGSGIHR PVAKKAMPGA EYKAKKAKGD ENSTTRP00000009371/1-1288 HQKLK-HKEA DSEELEVPPQ YQAGGSGIHR PVAKKATPGA EYKAKKAKGD ENSBTAP00000002844/1-1236 HQKLK-QKEA DDEELEMPPQ YQAGGSGIHR PVAKKTIPGA EYKAKKAKGD bmy_11417T0/1-1397 HQKLK-QKEA DDEELEMPPQ YQAGGSGIHR PVAKKATPGA EYKAKKAKGD BACU012436/1-1323 HQKLK-QKEA DDEELEMPPQ YQAGGSGIHR PVAKKATPGA EYKAKKAKGD 1351 1400 ENSP00000360031/1-1297 VKKKGRPDPY AYIPLNRSKL NRRKKMKLQG QFKGLVKAAR RGSQVGHKNR ENSTTRP00000009371/1-1288 MKKKGRLDPY AYIPLSKTKL NRRKKVKLQG QFKGLVRAAQ RGSQVGHKLR ENSBTAP00000002844/1-1236 VKKKGRLDPY AYIPLNRTKL NRRKKMKLQG QFKGLVRAAQ RGSHVGHKLR bmy_11417T0/1-1397 VKKKGRLEPY AYIPLSKTKL NRRKKVKLQG QFKGLVRAAQ RGSQVGHKLR BACU012436/1-1323 VKKKGRLEPY AYIPLSKTKL NRRKKVKLQG QFKGLVRAAQ RGSQVGHKLR 1401 1450 ENSP00000360031/1-1297 RKDRRP ENSTTRP00000009371/1-1288 RKDQRS ENSBTAP00000002844/1-1236 RKDRRP bmy_11417T0/1-1397 RKDQRP BACU012436/1-1323 RKDQRP