KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:15 2014 Check: 00 .. Name: ENSP00000356972/1-463 Len: 509 Check: 2405 Weight: 1.00 Name: ENSBTAP00000002852/1-463 Len: 509 Check: 1983 Weight: 1.00 Name: bmy_06343T0/1-509 Len: 509 Check: 8541 Weight: 1.00 Name: ENSTTRP00000008736/1-463 Len: 509 Check: 1316 Weight: 1.00 Name: BACU003854/1-462 Len: 509 Check: 1810 Weight: 1.00 // 1 50 ENSP00000356972/1-463 MAALRALCGF RGVAAQVLRP GAGVRLPIQP SRGVRQWQPD VEWAQQFGGA ENSBTAP00000002852/1-463 MAALRALCRL RGAAAQVLRP GAGVRLPIQP SRGARQWQPD VEWAEQYGGA bmy_06343T0/1-509 MATLRALCGL RGVAALVLRP GAGARLPIQP TRGARQWQPD VEWAEQFGGA ENSTTRP00000008736/1-463 MATLRALCGL RGVAALVLRP GAGARLPIQP TRGARQWQPD VEWAEQFGGA BACU003854/1-462 MATLRALCGL RGVAALV-RP GAGARLPIQP TRGARQWQPD VEWAEQFGGA 51 100 ENSP00000356972/1-463 VMYPSKETAH WKPPPWNDVD PPKDTIVKNI TLNFGPQHPA AHGVLRLVME ENSBTAP00000002852/1-463 VMYPTKETAH WKPPPWNDVD PPKDTLVSNL TLNFGPQHPA AHGVLRLVME bmy_06343T0/1-509 VMYPTKETAH WKPPPWNDVD PPKDTLVSNL TLNFGPQHPA AHGVLRLVME ENSTTRP00000008736/1-463 VMYPTKETAH WKPPPWNDED PPKDTLVSNL TLNFGPQHPA AHGVLRLVME BACU003854/1-462 VMYPTKETAH WKPPPWNDVD PPKDTLVSNL TLNFGPQHPA AHGVLRLVME 101 150 ENSP00000356972/1-463 LSGEMVRKCD PHIGLLHRGT EKLIEYKTYL QALPYFDRLD YVSMMCNEQA ENSBTAP00000002852/1-463 LSGEMVRKCD PHIGLLHRGT EKLIEYKTYL QALPYFDRLD YVSMMCNEQA bmy_06343T0/1-509 LSGEMVRKCD PHIGLLHRGT EKLIEYKTYL QALPYFDRLD YVSMMCNEQA ENSTTRP00000008736/1-463 LSGEMVRKCD PHIGLLHRGT EKLIEYKTYL QALPYFDRLD YVSMMCNEQA BACU003854/1-462 LSGEMVRKCD PHIGLLHRGT EKLIEYKTYL QALPYFDRLD YVSMMCNEQA 151 200 ENSP00000356972/1-463 YSLAVEKLLN IRPPPRAQWI RVLFGEITRL LNHIMAVTTH ALDLGAMTPF ENSBTAP00000002852/1-463 YSLAVEKLLN IQPPPRAQWI RVLFGEITRL LNHIMAVTTH ALDIGAMTPF bmy_06343T0/1-509 YSLAVEKLLN IQPPPRAQWI RVLFGEITRL LNHIMAVTTH ALDIGAMTPF ENSTTRP00000008736/1-463 YSLAVEKLLN IQPPPRAQWI RVLFGEITRL LNHIMAVTTH ALDIGAMTPF BACU003854/1-462 YSLAVEKLLN IQPPPRAQWI RVLFGEITRL LNHIMAVTTH ALDIGAMTPF 201 250 ENSP00000356972/1-463 FWLFEEREKM FEFYERVSGA RMHAAYIRPG GVHQDLPLGL MDDIYQFSKN ENSBTAP00000002852/1-463 FWMFEEREKM FEFYERVSGA RMHAAYVRPG GVHQDLPLGL MDDIYEFSKN bmy_06343T0/1-509 FWMFEEREKM FEFYERVSGA RMHAAYVRPG GVHQDLPLGL MDDIYEFSKN ENSTTRP00000008736/1-463 FWLFEEREKM FEFYERVSGA RMHAAYVRPG GVHQDLPLGL MDDIYEFSKN BACU003854/1-462 FWMFEEREKM FEFYERVSGA RMHAAYVRPG GVHQDLPLGL MDDIYEFSKN 251 300 ENSP00000356972/1-463 FSLRLDELEE LLTNNRIWRN RTIDIGVVTA EEALNYGFSG VMLRGSGIQW ENSBTAP00000002852/1-463 FSLRIDELEE MLTNNRIWRN RTVDIGIVTA EDALNYGFSG VMLRGSGIQW bmy_06343T0/1-509 FSLRIDELEE MLTNNRIWQN RTVDIGVVTA EDALNYGFSG VMLRGSGIQW ENSTTRP00000008736/1-463 FSLRIDELEE MLTNNRIWRN RTVDIGVVTA EDALNYGFSG VMLRGSGIQW BACU003854/1-462 FSLRIDELEE MLTNNRIWQN RTVDIGVVTA EDALNCGFSG VMLRGSGIQW 301 350 ENSP00000356972/1-463 DLRKTQPYDV YDQVEFDVPV GSRGDCYDRY LCRVEEMRQS LRIIAQCLNK ENSBTAP00000002852/1-463 DLRKTQPYDV YDQVEFDVPI GSRGDCYDRY LCRVEEMRQS IRIISQCLNK bmy_06343T0/1-509 DLRKTQPYDV YDQVEFDVPI GSRGDCYDRY LCRVEEMRQS LRIILQCLNK ENSTTRP00000008736/1-463 DLRKTQPYDV YDQVEFDVPI GSRGDCYDRY LCRVEEMRQS LRIILQCLNK BACU003854/1-462 DLRKTQPYDV YDQVEFDVPI GSRGDCYDRY LCRVEEMRQS LRIILQCLNK 351 400 ENSP00000356972/1-463 MPPGEIKVDD AKVSPPKRAE MKTSMESLIH HFKLYTEGYQ VPPGATYTAI ENSBTAP00000002852/1-463 MPPGEIKVDD AKVSPPKRAE MKTSMESLIH HFKLYTEGYQ VPPGATYTAI bmy_06343T0/1-509 MPPGEIKVDD AKVSPPKRAE MKTSMESLIH HFKLYTEGYQ VPPGATYTAI ENSTTRP00000008736/1-463 MPPGEIKVDD AKVSPPKRAE MKTSMESLIH HFKLYTEGYQ VPPGATYTAI BACU003854/1-462 MPPGEIKVDD AKVSPPKRAE MKTSMESLIH HFKLYTEGYQ VPPGATYTAI 401 450 ENSP00000356972/1-463 EAPKGEFGVY LVSDGSSRPY RCKIKAPGFA HLAGLDKMSK GHMLADVVAI ENSBTAP00000002852/1-463 EAPKGEFGVY LVSDGSSRPY RCKIKAPGFA HLAGLDKMSK GHMLADVVAI bmy_06343T0/1-509 EAPKGEFGVY LVSDGSSRPY RCKIKAPGFA HLAGLDKMSK GHMLADVVAI ENSTTRP00000008736/1-463 EAPKGEFGVY LVSDGSSRPY RCKIKAPGFA HLAGLDKMSK GHMLADVVAI BACU003854/1-462 EAPKGEFGVY LVSDGSSRPY RCKIKAPGFA HLAGLDKMSK GHMLADVVAI 451 500 ENSP00000356972/1-463 I---GTQDIV F--------- ---------- ---------G EVDR------ ENSBTAP00000002852/1-463 I---GTQDIV F--------- ---------- ---------G EVDR------ bmy_06343T0/1-509 IAALGEPQLC YILDAILFLY GIILTLLYCR LKKSDGIYTG LSTRNQETYE ENSTTRP00000008736/1-463 I---GTQDIV F--------- ---------- ---------G EVDR------ BACU003854/1-462 I---GTQDIV F--------- ---------- ---------G EVDR------ 501 550 ENSP00000356972/1-463 --------- ENSBTAP00000002852/1-463 --------- bmy_06343T0/1-509 TLKHEKPPQ ENSTTRP00000008736/1-463 --------- BACU003854/1-462 ---------