KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:17 2014 Check: 00 .. Name: ENSP00000380559/1-1269 Len: 1303 Check: 4818 Weight: 1.00 Name: ENSBTAP00000002854/1-1274 Len: 1303 Check: 6541 Weight: 1.00 Name: ENSTTRP00000010786/1-1263 Len: 1303 Check: 2848 Weight: 1.00 Name: bmy_01923T0/1-996 Len: 1303 Check: 6488 Weight: 1.00 Name: BACU019818/1-1280 Len: 1303 Check: 4031 Weight: 1.00 // 1 50 ENSP00000380559/1-1269 MTVKLGDGGS GEDGLKKLGK RAADEESLEG EGAGGADAAE ESSGTKRDEK ENSBTAP00000002854/1-1274 MTVKLGDGGG GEDGLKRLGK RSAEEDSLEG EGPGGGDAAE ESGGTKRDGK ENSTTRP00000010786/1-1263 MTVKLGDGGG GEEGLKRLGK RSADEDSLEG EGPGSGDAAE ESGGTKRDGK bmy_01923T0/1-996 ---------- ---------- ---------- ---------- ---------- BACU019818/1-1280 MTVKLGDGGG GEEGLKRLGK RSADEDSLEG EGPGGGDAAE ESGGTKRDGK 51 100 ENSP00000380559/1-1269 TPRAGADGPP APPGAPQAPS PPQGSPQDQH HFLRSSVRPQ SKRPRKDPPS ENSBTAP00000002854/1-1274 TPRDGGDGPQ APSGGPQAPS PPPACPQDQH HFLRSSVRPQ SKRLRKDSSC ENSTTRP00000010786/1-1263 TPRDGGDGPQ APSGGPQAPS PPPACPQDQH HFLRSSVRPQ SKRLRKDSSC bmy_01923T0/1-996 ---------- ---------- ---------- ---------- ---------- BACU019818/1-1280 TPRDGGDGPQ APSGGPQAPS PPPACPQDQH HFLRSSVRPQ SKRLRKDSSC 101 150 ENSP00000380559/1-1269 AVGSGNAGGS GPRGKGAEGG GSSSGNVSGV APAAPAGGSR SSSRNLGSSG ENSBTAP00000002854/1-1274 AGGSSGAGSS GPRGKGADGG GSSAANGPGV APAAPAGGSR SSSRNLGSSG ENSTTRP00000010786/1-1263 AGGSSSAGSS GPRGKXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01923T0/1-996 ---------- ---------- ---------- ---------- ---------- BACU019818/1-1280 AGGSSSAGSS GPRGKGAWLP QTCRPHLLAL FSPSHTAWDV LTYGALSDRR 151 200 ENSP00000380559/1-1269 GEKEEGKKVR RQWESWSTED KNTFFEGLYE HGKDFEAIQN NIALKYKKKG ENSBTAP00000002854/1-1274 GEKEEGKKVR RQWESWSTED KNTFFEGLYE HGKDFEAIQN NIALKYRKKG ENSTTRP00000010786/1-1263 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01923T0/1-996 ---------- ---------- ---------- ---------- ---------- BACU019818/1-1280 PRNWWSGLVT RKPVVSESLA CSSAPGGRAP WSRITPPSCP PFSQGGPSGV 201 250 ENSP00000380559/1-1269 KPASMVKNKE QVRHFYYRTW HK-ITKYIDF DHVFSRGLKK SSQELYGLIC ENSBTAP00000002854/1-1274 RPAGMVKNKE QVRHFYYRTW HK-ITKYIDF DNVFSRGLKK SSQELYGLIC ENSTTRP00000010786/1-1263 XXXXXXXXXX XXXXXXXXXX XX-XXXXXXX XXXFSRGLKK SSQELYGLIC bmy_01923T0/1-996 ---------- ---------- ---------- ---------- ---------- BACU019818/1-1280 RVGQGLACVS AGGGLAFQGF SQALFPGSVS ESMFSRGLKK SSQELYGLIC 251 300 ENSP00000380559/1-1269 YGELRKKIGG CMDDKNATKL NELIQVGATT VRYKGRNLRI KAPMCRALKK ENSBTAP00000002854/1-1274 YGELRKKIGG CMDDKNATKL NELIQAGATT VRYKGRNLRI KAPMCRALKK ENSTTRP00000010786/1-1263 YGELRKKIGG CMDDKNATKL NELIQAGATT VRYKGRN-RI KAPMCRALKK bmy_01923T0/1-996 ---------- ---------- ---------- ---------- ---MCRALKK BACU019818/1-1280 YGELRKKIGG CMDDKNATKL NELIQAGATT VRYKGRNLRI KAPMCRALKK 301 350 ENSP00000380559/1-1269 LCDPDGLSDE EDQKPVRLPL KVPIELQPRN NHAWARVQSL AQNPRLRMIV ENSBTAP00000002854/1-1274 LCDPDGLSDE EDQKPVRLPL RVPVELQPRN NHAWARVQSL AQNPRLRMIV ENSTTRP00000010786/1-1263 LCDPDGLSDE EDQKPVRLPL KVPVELQPRN NHAWARVQSL AQNPRLRMIV bmy_01923T0/1-996 LCDPDGLSDE EDQKPVRLPL KVPVELQPRN NHAWARVQSL SQNPRLRMIV BACU019818/1-1280 LCDPDGLSDE EDQKPVRLPL KVPVELQPRN NHAWARVQSL AQNPRLRMIV 351 400 ENSP00000380559/1-1269 ELHRKVSSLI EFLKQKWALH EVRVRKTLEE RQLQDSCSAP MQEKVTLHLF ENSBTAP00000002854/1-1274 ELHRKVSSLI EFLKQKWALH EVRIRKTLEE RQLQDSFSEP TQEKVALHLF ENSTTRP00000010786/1-1263 ELHRKVSSLI EFLKQKWALH EVRVRKTFEE QQLQDSFMEP SQEKVALHLF bmy_01923T0/1-996 ELHRKVSSLI EFLKQKWALH EVRVRKTFEE QQLQDSFTEP SQEKVALHLF BACU019818/1-1280 ELHRKVSSLI EFLKQKWALH EVRVRKMFEE QQLQDS-SEP SQEKVALHLF 401 450 ENSP00000380559/1-1269 PGENCTLTPL PGVARVVHSK AFCTVHWQEG GRCKQSAKDA HVLPPAQILG ENSBTAP00000002854/1-1274 PGENCTLTPL PGVARVVHSK AFCTVHWQEG GRCKQSAKDT HTLPPAQILG ENSTTRP00000010786/1-1263 PGENCTLTPL PGVARVVHSK AFCTVHWQEG GRCKQSTKDT HSLPPAQILG bmy_01923T0/1-996 PGENCTLTPL PGVARVVHSK AFCTVHWQEG GRCKQSTKDT HTLPPAQILG BACU019818/1-1280 PGENCTLTPL PGVARVVHSK AFCTVHWQEG GRCKQSTKDT HTLPPAQILG 451 500 ENSP00000380559/1-1269 IQSGQGTARG QVKCPRSGAE GKGVGRPPPA ADALQSSGES SPESAPGEGA ENSBTAP00000002854/1-1274 IQSGQGTARG QLKCPRAISE AKAGGRPPPS TDASQSSGES SPESAPGEGT ENSTTRP00000010786/1-1263 IQSGQGTARG QLKCPRGGAE AKGGGRPPPS TDALQSSGES SPESAPGEGA bmy_01923T0/1-996 IQSGQGTARG QLKCPRGGAE AKGGGRPPPS TDALQSSGES SPESAPGEGA BACU019818/1-1280 IQSGQGTARG QLKCPRGGAE TKGGGRPPPS TDALQSSGES SPESAPGEGA 501 550 ENSP00000380559/1-1269 ALSLSSPDAP DRPPPRHQDT GPCLEKTP-- --AEGRDSPT REPGALPCAC ENSBTAP00000002854/1-1274 AASFSSPDAS DRLPPGLQDA GGRLEKTPAV AAAEGGDGPA REPGAPACAC ENSTTRP00000010786/1-1263 AASFSSPDAS DRLPPGLQDA GGQLEKTPAA AAAEGGDGPA RESGPLACAC bmy_01923T0/1-996 AASFSSPDAS DRLPPGLQDA RGRLEKTPAA AAAEGGDGPA REPGALACAC BACU019818/1-1280 AASFSSPDAS DRLPPGLQDA GGRLEKTPAA AAAEGGDGPA REPGALACAC 551 600 ENSP00000380559/1-1269 GQLPDLEDEL SLLDPLPRYL KSCQDLIVPE QCRCADTRPG SEQPPLGGAA ENSBTAP00000002854/1-1274 GQLPDLEDEL SLLDPFPRYM KSCQDLIIPE QGRHVDPRP- ------AAWP ENSTTRP00000010786/1-1263 GQLPDLEDEL SLLDPFPRYM KSCQDLIIPE QCRCADSRP- ------QG-P bmy_01923T0/1-996 GQLPDLEDEL SLLDPFPRYM KSCQDLIIPE QCRCVDSRP- ------SGCP BACU019818/1-1280 GQLPDLEDEL SLLDPFPRYM KSCQDLIIPE QCRCVDSRP- ------SGCP 601 650 ENSP00000380559/1-1269 SPEVLAPVSK EAADLA---- ------PTGP SPRPGPGLLL DVCTKDLADA ENSBTAP00000002854/1-1274 SPEA---RSA EGADLARTRA PSPVRGPPGP EPQSSPGFQP DVCTKDLLDT ENSTTRP00000010786/1-1263 SPETLVPSSA EVADLA---- ------PPGP EPQPSPGLQP DVCTKDLADA bmy_01923T0/1-996 SPETLVPSNA EVADLARARA PSPVRVPPGP EPQPSPGLQP DVCTKDLADA BACU019818/1-1280 SPETLVPSSA EVADLARARA PSPVRVPPGP EPQPSPGLQP DVCTKDLADA 651 700 ENSP00000380559/1-1269 PAEELQEKGS PAGPPPSQGQ PAARPPKEVP ASRLAQQLRE EGWNLQTSES ENSBTAP00000002854/1-1274 PAEEPQEKVS PSDPPP-QGQ PAAKPPKDVP ASRLAQQLRE EGWNLQTSES ENSTTRP00000010786/1-1263 PAEEPQEKAS PLDPPPPQGQ PAVKPPKDVP ASRFAQQLRE EGWNLQTSES bmy_01923T0/1-996 PAEEPQEKAS PLDPPPPQGQ PAAKPPKDIP ASRFAQQLRE EGWNLQTSES BACU019818/1-1280 PAEEPQEKAS PLDPPPPQGQ PAAKPPKDIP ASRFAQQLRE EGWNLHTSES 701 750 ENSP00000380559/1-1269 LTLAEVYLMM GKPSKLQLEY DW---LGPG- ------RQDP RPGSLPTALH ENSBTAP00000002854/1-1274 LTLAEVYLMM GKPSKLQLEY DWLAVLGPE- ------ASGP HAGPQPATFH ENSTTRP00000010786/1-1263 LTLAEVYLMM GKPNKLQLEY DW---LGPG- ------PQGS RAGSPPTTFH bmy_01923T0/1-996 LTLAEVYLMM GKPNKLQLEY DWLAVLGPEG QAPGGQAQGS RTGSPPNSFH BACU019818/1-1280 LTLAEVYLMM GKPNKLQLEY DWLAVLGPE- ----GQAQGS RTGSPPNSFH 751 800 ENSP00000380559/1-1269 KQRLLSCLLK LISTEVNPKL ALEANTISTA SVRPAQEEQS MTPPGKVVTV ENSBTAP00000002854/1-1274 KQRLLSCLLK LISTEVNPRL APETNTGSTA SVRPAQEEQS TPPPGKVVTV ENSTTRP00000010786/1-1263 KQRLLSCLLK LISTEVNPRL APEANTGSTA SVRPVQEEQS TTPPGKVVTV bmy_01923T0/1-996 RQRLLSCLLK LISTEVNPKL APEVNTGSTA SVRPAQEEQS TTPPGKVVTV BACU019818/1-1280 RQRLLSCLLK LISTEVNPRL APEVNTGSTA SVRPAQEEQS TTPPGKVVTV 801 850 ENSP00000380559/1-1269 SSRSPRCPRN QASLRSSKTF PPSSAPCSSG LRNPPRPLLV PGPSSTGSND ENSBTAP00000002854/1-1274 SSRSPRCPRN QAALRHSKAF SPSSVPCSSG LRNPPRPLLV ASPTSTGSSD ENSTTRP00000010786/1-1263 STRSPRCPRN QAALRHGKTF SPSSTPCSSG LRNPPRPLLV AGPSSAGSGD bmy_01923T0/1-996 SSRSPRCPRN QAALRHGKTF SPSSAPCSSG LRNPPRPLLV AGPSSAGSSD BACU019818/1-1280 SSRSPRCPRN QAALRHSKTF SPSSAPCSSG LRNPPRPLLV AGPSSAGSSD 851 900 ENSP00000380559/1-1269 SDGGLFAVPT TLPPNSRHGK LFSPSKEAEL TFRQHLNSIS M---QSDFFL ENSBTAP00000002854/1-1274 SDGGLFAVPT TLPPNSRHGK LFFPNKETEL TFRQHLSSIS M---QSDFFL ENSTTRP00000010786/1-1263 SDGGLFAVPT TLPPNSRHGK LFSPNKETEL TFRQHLNSIS M---QSDFFL bmy_01923T0/1-996 SDGGLFAVPT TLPPNSRHGK LFSPNKETEL TFRQHLNSIS VSGAHASLLL BACU019818/1-1280 SDGGLFAVPT TLPPNSRHGK LFSPNKETEL TFRQHLNSIS M---QSDFFL 901 950 ENSP00000380559/1-1269 PKPRKLRNRH LRKPLVVQRT LLPRPSENQS HNVCSFSILS NSSVTGRGSF ENSBTAP00000002854/1-1274 PKPRKLRNRH LRKPLVVQRT LLPRPSENQS HNVCSFSILS NSSVTGRGSF ENSTTRP00000010786/1-1263 PKPRKLRNRH LRKPLVVQRT LLPRPSENQS HNVCSFSILS NSSITGRGSF bmy_01923T0/1-996 GCP-----VC VEKTLSGSRT LLPRPSENQS HNVCSFSILS NSSITGRGSF BACU019818/1-1280 PKPRKLRNRH LRKPLVVQRT LLPRPSENQS HNVCSFSILS NSSITGRGSF 951 1000 ENSP00000380559/1-1269 RPIQSSLTKA ALSRPIVPKV LPPQATSHLA SAIDLAATSA GILSGNPLPA ENSBTAP00000002854/1-1274 RPVQSSLAKA AVSRPIVPKV LPPQATGPLA SAIDLAAKSA GIIPGSPLPV ENSTTRP00000010786/1-1263 RPIQSSLTKA ALSRPIVPKV LPPQAPGHLA SAIDLAAKSA GIIPGSPLPV bmy_01923T0/1-996 RPIQSSLTKA ALSRPIVPKV LPPQAPGHLA SAIDLAAKSA GIIPGSPLPV BACU019818/1-1280 RPIQSSLTKA ALSRPIVPKV LPPQAPGHLA SAIDLAAKSA GIIPGSPLPV 1001 1050 ENSP00000380559/1-1269 LDTEGLSGIS PLSSDEVTGA ISGQDSTGTH QDGDTLPTVG G-SDPFVSIP ENSBTAP00000002854/1-1274 LDTDGLSGIA PLSSDEVTAA VTGPDSTGPH QNGDPLPAVG ATSDPFISVP ENSTTRP00000010786/1-1263 LDADGLSGIS PLSSDEVTVT VSGQDSTGTH QNGDPIPAVG GTSDPFISVP bmy_01923T0/1-996 LDADGLSGIS PLSSDEVTVT VSGQDSTGTH QNGDPIPAVG GTSDPFISVP BACU019818/1-1280 LDADGLSGIS PLSSDEVTVT VSGQDSTSTH QNGDPIPTVG GTSDPFISVP 1051 1100 ENSP00000380559/1-1269 SRPEQEPVAD SF-----QGS SVLSLSELPK APLQNGLSIP LSSSESSSTR ENSBTAP00000002854/1-1274 SR--QEPVAD SF-----QNP PVLSLSELSK APVHNGLSTP LPPSEASSTR ENSTTRP00000010786/1-1263 SR--QETVAD GF-----QNS PVLSLSELSK APLHNGLSTP LASSEASSTR bmy_01923T0/1-996 SR--QETVAD GFQYLSPQNS PVLSLSELSK APLHNGLSTP LPSSEASSTR BACU019818/1-1280 SR--QNTLAD GF-----QNS PVLSLSELSK APLHNGLSTP LPSSEASSTR 1101 1150 ENSP00000380559/1-1269 LSPPDVSALL DISLPGPPED ALSQGEPATH ISDSIIEIAI SSGQYGEGVP ENSBTAP00000002854/1-1274 LSPPNVSALL DISLPGPPED VLSQGEPATH ISDSIIEIAI SSGQYGEGVP ENSTTRP00000010786/1-1263 LSPPNVSALL DISLPGPPED VLSQGEPATQ ISDSIIEIAI SSGQYSEGVP bmy_01923T0/1-996 LSPPNVSALL DISLPGPPED VLSQGEPATQ ISDSIIEIAI SSGQYSEGVP BACU019818/1-1280 LSPPNVSALL DISLPGPPED VLSQGEPATQ ISDSIIEIAI SSGQYSEGVP 1151 1200 ENSP00000380559/1-1269 LSPAKLNGSD SSKSLPSPSS SPQPHWIASP THDPQWYPSD STDSSLSSLF ENSBTAP00000002854/1-1274 LSPAKLNGSD SSKSLPSPSS SPQPDWIASP THDPQWCPSD PTDSSLSSLF ENSTTRP00000010786/1-1263 LSPAKLNGSD SSKSLPSPSS SPQPDWIASP THDPQWCPSD PTDSSLSSLF bmy_01923T0/1-996 LSPAKLNGSD SSKSLPSPSS SPQPDWIASP THDPQWCPSD PTDSSLSSLF BACU019818/1-1280 LSPAKLNGSD SSKSLPSPSS SPQPDWIASP THDPQWCPSD PTDSSLSSLF 1201 1250 ENSP00000380559/1-1269 ASFISPEKSR KMLPTPIGTN SGTSLLGPSL LDGNSRDSFV SRSLADVAEV ENSBTAP00000002854/1-1274 ASFISPEKSR KMLPTPVGTS SGTSLLGPSL LDGSSRDSFV SRSLADVAEV ENSTTRP00000010786/1-1263 ASFISPEKSR KMLPTPVGTN SGTSLLGPSL LDGNSRDSFV SRSLADVAEV bmy_01923T0/1-996 ASFISPEKSR KMLPTPVGTN SGTSLLGPSL LDGNSRDSFV SRSLADVAEV BACU019818/1-1280 ASFISPEKSR KMLPTPVGTN SGTSLLGPSL LDGNSRDSFV SRSLADVAEV 1251 1300 ENSP00000380559/1-1269 VDSQLVCMMN ENSIDYISRF NDLAQELSIA EPGRREALFD GGGGGPAVSD ENSBTAP00000002854/1-1274 VDSQLVCMMN ENSVDYISRF NDLAQELSIA EPGRREALFD GGGGGPPVTD ENSTTRP00000010786/1-1263 VDSQLVCMMN ENSIDYISRF NDLAQELSIA EPGRREVLFD GGGGGPPVGD bmy_01923T0/1-996 VDSQLVCMMN ENSIDYISRF NDLAQELSIA EPGRREVLFD GGGGGPPVGD BACU019818/1-1280 VDSQLVCMMN ENSIDYISRF NDLAQELSIA EPGRREVLFD GGGGGPPVGD 1301 1350 ENSP00000380559/1-1269 LSQ ENSBTAP00000002854/1-1274 LSQ ENSTTRP00000010786/1-1263 LSQ bmy_01923T0/1-996 LSQ BACU019818/1-1280 LSQ