KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:18 2014 Check: 00 .. Name: ENSP00000363944/1-734 Len: 843 Check: 8556 Weight: 1.00 Name: ENSBTAP00000002861/1-773 Len: 843 Check: 2624 Weight: 1.00 Name: ENSTTRP00000007067/1-717 Len: 843 Check: 1919 Weight: 1.00 Name: bmy_21886T0/1-691 Len: 843 Check: 6404 Weight: 1.00 Name: BACU011799/1-627 Len: 843 Check: 2551 Weight: 1.00 // 1 50 ENSP00000363944/1-734 ---------- ---------- ---------- ---------- ---------M ENSBTAP00000002861/1-773 MEADREMEAD HEMEDDLQCG GTRPELDVEP VEPDVEPVEP DVEPDVEPDV ENSTTRP00000007067/1-717 ---------- ---------- ---------- ---------- ---------- bmy_21886T0/1-691 ---------- ---------- ---------- ---------- ---------- BACU011799/1-627 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000363944/1-734 SWESGAGPGL GSQGMDLVWS AWYGKCVKGK GSLPLSAHGI VVAWLSRAEW ENSBTAP00000002861/1-773 RSESEIEPGL GPRGMDLVWS AWCGKCVKEK GSSPLWAQRI VVAWLSRAEW ENSTTRP00000007067/1-717 VWWSGIEPGL SPRGMDRVWS AWCGKCVKEK GSPPLWAQRI VVAWLSRAEW bmy_21886T0/1-691 ---------- ----MDRVWS AWCGKCVKEK GSPPLWAQRI VVAWLSRAEW BACU011799/1-627 ---------- ----MDRVWS AWCGKCVKEK GSPPLWAQRI VVAWLSRAEW 101 150 ENSP00000363944/1-734 DQVTVYLFCD DHKLQRYALN RITVWRSRSG NELPLAVAST ADLIRCKLLD ENSBTAP00000002861/1-773 DQVMVYLFSD DYKLQRYALN RITVWRSRLG NELPLAVAST ADLVRCKLMD ENSTTRP00000007067/1-717 DQVTVYLFSD DHKLQRYALN RITVWRSRLG NELPLAVAST ADLVRCKLMD bmy_21886T0/1-691 DQVTVYLFSD DHKLQRYALN RITVWRSRLG NELPLAVAST ADLVRCKLMD BACU011799/1-627 DQVNI---PD ---------- ----W----- ---------- ---------- 151 200 ENSP00000363944/1-734 VTGGLGTDEL RLLYGMALVR FVNLISERKT KFAKVPLKCL AQEVNIPDWI ENSBTAP00000002861/1-773 VTGGLGTDEL RLLYGMALVR FVNLISERKT KFAKLPLKFL AQEVNIPDWI ENSTTRP00000007067/1-717 VTGGLGTDEL RLLYGMALVR FVNLISERKT KFAKLPLKFL AQEVNIPDGI bmy_21886T0/1-691 VTGGLGTDEL RLLYGMALVC ---------- ---------- ---------- BACU011799/1-627 ---------- ---------- ---------- ---------- ---------I 201 250 ENSP00000363944/1-734 VDLRHELTHK KMPHIND--- -CRR------ --GCYFVLDW LQKTYWCRQL ENSBTAP00000002861/1-773 VELRHELTHK KMPHIND--- -CRR------ --GCYFVLDW LQNTYWCRQM ENSTTRP00000007067/1-717 VELRHELTHK KMPHIND--- -CRR------ --GCYFVLDW LQKTYWCRQL bmy_21886T0/1-691 ---------- -EPYLGEEDK VCQAPSQVPG SGGCYFVLDW LQKTYWCRQL BACU011799/1-627 VELRHELTHK KMPHIND--- -CRR------ --GCYFVLDW LQKTYWCRQL 251 300 ENSP00000363944/1-734 ENSLRETWEL EEFREGIEEE DQEEDKNIVV DDITEQKP-- ---------- ENSBTAP00000002861/1-773 ENSLRETWEL EEEREETDEA DQEEDKKIVV DDITEQNP-- ---------- ENSTTRP00000007067/1-717 ENSLRETWEL EEDREETDEE DQEEDKNIVV DDITEQKP-- ---------- bmy_21886T0/1-691 ENSLRETWEL EEDREETDEE DQEEDKNIVV DDITEQKLEP KDEEKGAEPK BACU011799/1-627 ENSLRETWEL EEDREETDEE DQEEDKNIVV DDITEQKPEP KDEEKGAEPK 301 350 ENSP00000363944/1-734 ------EPQD DGKSTESDVK ADGDSKGS-- -EEVDSHCKK ALSHKELYER ENSBTAP00000002861/1-773 ------EPKD EEKGVELNVK TDGDRESNKD GKEVDPLLQK ALRHKQLYER ENSTTRP00000007067/1-717 ------EPKD EEKGAELDVK ADGDSEGN-- -KEVDPHWQK AVRHKELYER bmy_21886T0/1-691 DEEQGAEPKD EEKGAELDVK ADGDSEGN-- -KEVDPHWQK A--------- BACU011799/1-627 DEEQGAEPKD EEKGAELGVK ADGDSEGN-- -KEVDPHWQK AVRHKELYER 351 400 ENSP00000363944/1-734 ARELLVSYEE EQFTVLEKFR YLPKAIKAWN NPSPRVECVL AELKGVTCEN ENSBTAP00000002861/1-773 ARELLVSYEE EQFKVLEKYR HLPQAIKAWN NLSPPVECIL AELKGITLEN ENSTTRP00000007067/1-717 ARELLVSYEE EQFKVLEKFR YLPQAIKAWN NLSPPVECIL AELKGITWEN bmy_21886T0/1-691 ---------- ----VLEKFR YLPQAIKAWN NLSPPVECIL AELKGITWEN BACU011799/1-627 ARELLVSYEE EQFKVLEKFR YLPQAIKAWN NLSPPVECIL AELKGITWEN 401 450 ENSP00000363944/1-734 REAVLDAFLD DGFLVPTFEQ LAALQIEYED GQTEVQRGEG TDPKSHKNVD ENSBTAP00000002861/1-773 REAVLDAFLD DGFLIPTFEQ LAALQIEYEE ---------- -------NVD ENSTTRP00000007067/1-717 REALLDAFLD DGFLIPTFEQ LAALQLDYED GQTEVQRGES TDPKSHKNVD bmy_21886T0/1-691 REALLDAFLD DGFLIPTFEQ LAALQLDYEE ---------- -------NVD BACU011799/1-627 REALLDAFLD DGFLIPTFEQ LAALQLDYEE ---------- -------NVD 451 500 ENSP00000363944/1-734 LNDVLVPKPF SQFWQPLLRG LHSQNFTQAL LERMLSELPA LGISGIRPTY ENSBTAP00000002861/1-773 LDDVLVPKPF SQFWQPLLRG LHSQTFTQAL LERMLSELPA LGNTGIRPTY ENSTTRP00000007067/1-717 LNDVLVPRPF SQFWQPLLRG LHSQTFTQAL LERMLSELPA LGDTGIRPTY bmy_21886T0/1-691 LNDVLVPKPF SQFWQPLLRG LHSQTFTQAL LERMLSELPA LGDTGIRPTY BACU011799/1-627 LNDVLVPKPF SQFWQPLLRG LHSQTFTQAL LERMLSELPA LGDTGIRPTY 501 550 ENSP00000363944/1-734 ILRWTVELIV ANTKTGRNAR RFSAGQWEAR RGWRLFNCSA SLDWPRMVES ENSBTAP00000002861/1-773 ILRWTTELIV ANTKTGRNAR RFSASQWEAR KNWRLFNCSA SLDWPQVVES ENSTTRP00000007067/1-717 ILRWTIELIV ANTKTGQNAR RFSASQWEAR KNXXXXXXXX XXXXXXXXXX bmy_21886T0/1-691 ILRWTIELIV ANTKTGRNAR RFSASQWEAR KNWRLFNCSA SLDWPQVVES BACU011799/1-627 ILRWTIELIV ANTKTGRNAR RFSASQWEAR KNWRLFNCSA SLDWPQVVES 551 600 ENSP00000363944/1-734 CLGSPCWASP QLLRIIFKAM GQGLPDEEQE KLLRICSIYT QSGENSLVQE ENSBTAP00000002861/1-773 CLGSPCWASP QLLQLIFKAM GQFLPDEEQE KLLRICSIYT QSGEN-LVQE ENSTTRP00000007067/1-717 XXXXXXXXXX XXXXXIFKAM GQVLPDEEQE KLLRICSIYT QSGENNLVQE bmy_21886T0/1-691 CLGSPCWASP QLLQLIFKAM GQVLPDEEQE KLLRICSIYT QSGENNLAQE BACU011799/1-627 CLGSPCWASP QLLQLIFKAM GQVLPDEEQE KLLRICSIYT QSGENNLAQE 601 650 ENSP00000363944/1-734 GSEASPIGKS PYTLDSLYWS VKPASSSFGS EAKAQQQEEQ GSVNDVKEEE ENSBTAP00000002861/1-773 GSEASPIGKS PYTVDNLYLI LKPAGSSSGA EGEAQKQEEQ GNLNDVKEDE ENSTTRP00000007067/1-717 GSEASPIGKS PYTLDSLYWS LKPAGSSSGP EGEAQQQEEQ GSLNDAKDXX bmy_21886T0/1-691 GSEASPIGKS PYTLDSLYWS LKPAGSSSGP EGEAQQQEEQ GSLNDAKEDE BACU011799/1-627 GSEASPIGKS PYTLDSLYWS LKPAGSSSGP EGEAQRQEEQ GSLNDVKEDE 651 700 ENSP00000363944/1-734 KEEKEVLPDQ V------EEE EENDDQEEEE EDEDDEDD-- ---------- ENSBTAP00000002861/1-773 KENKEAVEDQ VEEN---EEE EENDHQKWEE EEEDDGHDDN DNDDE----- ENSTTRP00000007067/1-717 XXKQEALEDQ I------EEE EENDDQKWEE EEEGDEDE-- ---------- bmy_21886T0/1-691 KENQEALEDQ VEEDDEEEEE EENDDQKWEE EEEGDDDDDD DDDDDDDDDY BACU011799/1-627 KENQEALEDQ VEEDDE-EEE EEENDQKWEE EEEGDDDDDD DDDDDDADDY 701 750 ENSP00000363944/1-734 ---EEEDRME VGPFSTGQES PTAENARLLA QKRGALQGSA WQVSSEDVRW ENSBTAP00000002861/1-773 ---DEEDRME VGPFSTEEES PTAENARLLA QKRGALQDSA WQVSSEDVRW ENSTTRP00000007067/1-717 ---EEEDRME VGPFSMEEES PTAENARLLA QKRGALEGST WQVSSEDVRW bmy_21886T0/1-691 EDYEEEDRME VGPFSMEEES PTAENARLLA QKRGALEGSA WQVSSEDVRW BACU011799/1-627 EDYEEEDRME VGPFSMEEES PTAENARLLA QKRGALEGSA WQVSSEDVRW 751 800 ENSP00000363944/1-734 DTFPLGRMPG QTEDPAELML ENYDTMYLLD QPVLEQRLEP STCKTDT--- ENSBTAP00000002861/1-773 DTFPLGRMPG QTEDPAELML ENYDTMYLLD QPVLEQRLEP PACKIGT--- ENSTTRP00000007067/1-717 DTFPLGRMPG QTEDPSELML ENYDTMYLLD QPVLDQRLEP PTCKTGT--- bmy_21886T0/1-691 DTFPLGRMPG QTEDPSELML ENYDTMYLLD QPVLDQRLEP PACKTGT--- BACU011799/1-627 DTFPLGRMPG QTEDPSELML ENYDTMYLLD QPVLDQRLEP PACKTGKDEV 801 850 ENSP00000363944/1-734 -LGLSCGVGS GNCSNSS--S SNFEGLLWSQ GQLHGLKTGL QLF ENSBTAP00000002861/1-773 -LGLSCS--- ----SGSNDS GNLDQLLWSQ EELHMLKTSV QLF ENSTTRP00000007067/1-717 -LGLSCSIGS GNCNNGSNDS GNLDG----- ---------- --- bmy_21886T0/1-691 -LGLSCSIGS GNCSSGSNDS GNLDGLLWSQ GQLHGLKSGL QLF BACU011799/1-627 DFPVVCT-GA EKCLRG---- ---------- ---------- ---