KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:19:18 2014 Check: 00 ..
Name: ENSP00000363944/1-734 Len: 843 Check: 8556 Weight: 1.00
Name: ENSBTAP00000002861/1-773 Len: 843 Check: 2624 Weight: 1.00
Name: ENSTTRP00000007067/1-717 Len: 843 Check: 1919 Weight: 1.00
Name: bmy_21886T0/1-691 Len: 843 Check: 6404 Weight: 1.00
Name: BACU011799/1-627 Len: 843 Check: 2551 Weight: 1.00
//
1 50
ENSP00000363944/1-734 ---------- ---------- ---------- ---------- ---------M
ENSBTAP00000002861/1-773 MEADREMEAD HEMEDDLQCG GTRPELDVEP VEPDVEPVEP DVEPDVEPDV
ENSTTRP00000007067/1-717 ---------- ---------- ---------- ---------- ----------
bmy_21886T0/1-691 ---------- ---------- ---------- ---------- ----------
BACU011799/1-627 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000363944/1-734 SWESGAGPGL GSQGMDLVWS AWYGKCVKGK GSLPLSAHGI VVAWLSRAEW
ENSBTAP00000002861/1-773 RSESEIEPGL GPRGMDLVWS AWCGKCVKEK GSSPLWAQRI VVAWLSRAEW
ENSTTRP00000007067/1-717 VWWSGIEPGL SPRGMDRVWS AWCGKCVKEK GSPPLWAQRI VVAWLSRAEW
bmy_21886T0/1-691 ---------- ----MDRVWS AWCGKCVKEK GSPPLWAQRI VVAWLSRAEW
BACU011799/1-627 ---------- ----MDRVWS AWCGKCVKEK GSPPLWAQRI VVAWLSRAEW
101 150
ENSP00000363944/1-734 DQVTVYLFCD DHKLQRYALN RITVWRSRSG NELPLAVAST ADLIRCKLLD
ENSBTAP00000002861/1-773 DQVMVYLFSD DYKLQRYALN RITVWRSRLG NELPLAVAST ADLVRCKLMD
ENSTTRP00000007067/1-717 DQVTVYLFSD DHKLQRYALN RITVWRSRLG NELPLAVAST ADLVRCKLMD
bmy_21886T0/1-691 DQVTVYLFSD DHKLQRYALN RITVWRSRLG NELPLAVAST ADLVRCKLMD
BACU011799/1-627 DQVNI---PD ---------- ----W----- ---------- ----------
151 200
ENSP00000363944/1-734 VTGGLGTDEL RLLYGMALVR FVNLISERKT KFAKVPLKCL AQEVNIPDWI
ENSBTAP00000002861/1-773 VTGGLGTDEL RLLYGMALVR FVNLISERKT KFAKLPLKFL AQEVNIPDWI
ENSTTRP00000007067/1-717 VTGGLGTDEL RLLYGMALVR FVNLISERKT KFAKLPLKFL AQEVNIPDGI
bmy_21886T0/1-691 VTGGLGTDEL RLLYGMALVC ---------- ---------- ----------
BACU011799/1-627 ---------- ---------- ---------- ---------- ---------I
201 250
ENSP00000363944/1-734 VDLRHELTHK KMPHIND--- -CRR------ --GCYFVLDW LQKTYWCRQL
ENSBTAP00000002861/1-773 VELRHELTHK KMPHIND--- -CRR------ --GCYFVLDW LQNTYWCRQM
ENSTTRP00000007067/1-717 VELRHELTHK KMPHIND--- -CRR------ --GCYFVLDW LQKTYWCRQL
bmy_21886T0/1-691 ---------- -EPYLGEEDK VCQAPSQVPG SGGCYFVLDW LQKTYWCRQL
BACU011799/1-627 VELRHELTHK KMPHIND--- -CRR------ --GCYFVLDW LQKTYWCRQL
251 300
ENSP00000363944/1-734 ENSLRETWEL EEFREGIEEE DQEEDKNIVV DDITEQKP-- ----------
ENSBTAP00000002861/1-773 ENSLRETWEL EEEREETDEA DQEEDKKIVV DDITEQNP-- ----------
ENSTTRP00000007067/1-717 ENSLRETWEL EEDREETDEE DQEEDKNIVV DDITEQKP-- ----------
bmy_21886T0/1-691 ENSLRETWEL EEDREETDEE DQEEDKNIVV DDITEQKLEP KDEEKGAEPK
BACU011799/1-627 ENSLRETWEL EEDREETDEE DQEEDKNIVV DDITEQKPEP KDEEKGAEPK
301 350
ENSP00000363944/1-734 ------EPQD DGKSTESDVK ADGDSKGS-- -EEVDSHCKK ALSHKELYER
ENSBTAP00000002861/1-773 ------EPKD EEKGVELNVK TDGDRESNKD GKEVDPLLQK ALRHKQLYER
ENSTTRP00000007067/1-717 ------EPKD EEKGAELDVK ADGDSEGN-- -KEVDPHWQK AVRHKELYER
bmy_21886T0/1-691 DEEQGAEPKD EEKGAELDVK ADGDSEGN-- -KEVDPHWQK A---------
BACU011799/1-627 DEEQGAEPKD EEKGAELGVK ADGDSEGN-- -KEVDPHWQK AVRHKELYER
351 400
ENSP00000363944/1-734 ARELLVSYEE EQFTVLEKFR YLPKAIKAWN NPSPRVECVL AELKGVTCEN
ENSBTAP00000002861/1-773 ARELLVSYEE EQFKVLEKYR HLPQAIKAWN NLSPPVECIL AELKGITLEN
ENSTTRP00000007067/1-717 ARELLVSYEE EQFKVLEKFR YLPQAIKAWN NLSPPVECIL AELKGITWEN
bmy_21886T0/1-691 ---------- ----VLEKFR YLPQAIKAWN NLSPPVECIL AELKGITWEN
BACU011799/1-627 ARELLVSYEE EQFKVLEKFR YLPQAIKAWN NLSPPVECIL AELKGITWEN
401 450
ENSP00000363944/1-734 REAVLDAFLD DGFLVPTFEQ LAALQIEYED GQTEVQRGEG TDPKSHKNVD
ENSBTAP00000002861/1-773 REAVLDAFLD DGFLIPTFEQ LAALQIEYEE ---------- -------NVD
ENSTTRP00000007067/1-717 REALLDAFLD DGFLIPTFEQ LAALQLDYED GQTEVQRGES TDPKSHKNVD
bmy_21886T0/1-691 REALLDAFLD DGFLIPTFEQ LAALQLDYEE ---------- -------NVD
BACU011799/1-627 REALLDAFLD DGFLIPTFEQ LAALQLDYEE ---------- -------NVD
451 500
ENSP00000363944/1-734 LNDVLVPKPF SQFWQPLLRG LHSQNFTQAL LERMLSELPA LGISGIRPTY
ENSBTAP00000002861/1-773 LDDVLVPKPF SQFWQPLLRG LHSQTFTQAL LERMLSELPA LGNTGIRPTY
ENSTTRP00000007067/1-717 LNDVLVPRPF SQFWQPLLRG LHSQTFTQAL LERMLSELPA LGDTGIRPTY
bmy_21886T0/1-691 LNDVLVPKPF SQFWQPLLRG LHSQTFTQAL LERMLSELPA LGDTGIRPTY
BACU011799/1-627 LNDVLVPKPF SQFWQPLLRG LHSQTFTQAL LERMLSELPA LGDTGIRPTY
501 550
ENSP00000363944/1-734 ILRWTVELIV ANTKTGRNAR RFSAGQWEAR RGWRLFNCSA SLDWPRMVES
ENSBTAP00000002861/1-773 ILRWTTELIV ANTKTGRNAR RFSASQWEAR KNWRLFNCSA SLDWPQVVES
ENSTTRP00000007067/1-717 ILRWTIELIV ANTKTGQNAR RFSASQWEAR KNXXXXXXXX XXXXXXXXXX
bmy_21886T0/1-691 ILRWTIELIV ANTKTGRNAR RFSASQWEAR KNWRLFNCSA SLDWPQVVES
BACU011799/1-627 ILRWTIELIV ANTKTGRNAR RFSASQWEAR KNWRLFNCSA SLDWPQVVES
551 600
ENSP00000363944/1-734 CLGSPCWASP QLLRIIFKAM GQGLPDEEQE KLLRICSIYT QSGENSLVQE
ENSBTAP00000002861/1-773 CLGSPCWASP QLLQLIFKAM GQFLPDEEQE KLLRICSIYT QSGEN-LVQE
ENSTTRP00000007067/1-717 XXXXXXXXXX XXXXXIFKAM GQVLPDEEQE KLLRICSIYT QSGENNLVQE
bmy_21886T0/1-691 CLGSPCWASP QLLQLIFKAM GQVLPDEEQE KLLRICSIYT QSGENNLAQE
BACU011799/1-627 CLGSPCWASP QLLQLIFKAM GQVLPDEEQE KLLRICSIYT QSGENNLAQE
601 650
ENSP00000363944/1-734 GSEASPIGKS PYTLDSLYWS VKPASSSFGS EAKAQQQEEQ GSVNDVKEEE
ENSBTAP00000002861/1-773 GSEASPIGKS PYTVDNLYLI LKPAGSSSGA EGEAQKQEEQ GNLNDVKEDE
ENSTTRP00000007067/1-717 GSEASPIGKS PYTLDSLYWS LKPAGSSSGP EGEAQQQEEQ GSLNDAKDXX
bmy_21886T0/1-691 GSEASPIGKS PYTLDSLYWS LKPAGSSSGP EGEAQQQEEQ GSLNDAKEDE
BACU011799/1-627 GSEASPIGKS PYTLDSLYWS LKPAGSSSGP EGEAQRQEEQ GSLNDVKEDE
651 700
ENSP00000363944/1-734 KEEKEVLPDQ V------EEE EENDDQEEEE EDEDDEDD-- ----------
ENSBTAP00000002861/1-773 KENKEAVEDQ VEEN---EEE EENDHQKWEE EEEDDGHDDN DNDDE-----
ENSTTRP00000007067/1-717 XXKQEALEDQ I------EEE EENDDQKWEE EEEGDEDE-- ----------
bmy_21886T0/1-691 KENQEALEDQ VEEDDEEEEE EENDDQKWEE EEEGDDDDDD DDDDDDDDDY
BACU011799/1-627 KENQEALEDQ VEEDDE-EEE EEENDQKWEE EEEGDDDDDD DDDDDDADDY
701 750
ENSP00000363944/1-734 ---EEEDRME VGPFSTGQES PTAENARLLA QKRGALQGSA WQVSSEDVRW
ENSBTAP00000002861/1-773 ---DEEDRME VGPFSTEEES PTAENARLLA QKRGALQDSA WQVSSEDVRW
ENSTTRP00000007067/1-717 ---EEEDRME VGPFSMEEES PTAENARLLA QKRGALEGST WQVSSEDVRW
bmy_21886T0/1-691 EDYEEEDRME VGPFSMEEES PTAENARLLA QKRGALEGSA WQVSSEDVRW
BACU011799/1-627 EDYEEEDRME VGPFSMEEES PTAENARLLA QKRGALEGSA WQVSSEDVRW
751 800
ENSP00000363944/1-734 DTFPLGRMPG QTEDPAELML ENYDTMYLLD QPVLEQRLEP STCKTDT---
ENSBTAP00000002861/1-773 DTFPLGRMPG QTEDPAELML ENYDTMYLLD QPVLEQRLEP PACKIGT---
ENSTTRP00000007067/1-717 DTFPLGRMPG QTEDPSELML ENYDTMYLLD QPVLDQRLEP PTCKTGT---
bmy_21886T0/1-691 DTFPLGRMPG QTEDPSELML ENYDTMYLLD QPVLDQRLEP PACKTGT---
BACU011799/1-627 DTFPLGRMPG QTEDPSELML ENYDTMYLLD QPVLDQRLEP PACKTGKDEV
801 850
ENSP00000363944/1-734 -LGLSCGVGS GNCSNSS--S SNFEGLLWSQ GQLHGLKTGL QLF
ENSBTAP00000002861/1-773 -LGLSCS--- ----SGSNDS GNLDQLLWSQ EELHMLKTSV QLF
ENSTTRP00000007067/1-717 -LGLSCSIGS GNCNNGSNDS GNLDG----- ---------- ---
bmy_21886T0/1-691 -LGLSCSIGS GNCSSGSNDS GNLDGLLWSQ GQLHGLKSGL QLF
BACU011799/1-627 DFPVVCT-GA EKCLRG---- ---------- ---------- ---