KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:19 2014 Check: 00 .. Name: ENSP00000250894/1-1336 Len: 1446 Check: 151 Weight: 1.00 Name: ENSBTAP00000002865/1-1328 Len: 1446 Check: 2271 Weight: 1.00 Name: ENSTTRP00000010789/1-1315 Len: 1446 Check: 3026 Weight: 1.00 Name: bmy_01925T0/1-1084 Len: 1446 Check: 2672 Weight: 1.00 Name: BACU009228/1-1428 Len: 1446 Check: 3814 Weight: 1.00 // 1 50 ENSP00000250894/1-1336 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002865/1-1328 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010789/1-1315 ---------- ---------- ---------- ---------- ---------- bmy_01925T0/1-1084 ---------- ---------- ---------- ---------- ---------- BACU009228/1-1428 MGGHRPRCLG GGTSGRRDFR PLSDGRSISI SISWRWLRRQ WLRRRRRAAA 51 100 ENSP00000250894/1-1336 ---------- ---------- -----MMEIQ MDEGGGVVVY QDDYCSGSVM ENSBTAP00000002865/1-1328 ---------- ---------- -----MMEIQ MDEGGGVVVY QDDYCSGSVM ENSTTRP00000010789/1-1315 ---------- ---------- -----MMEIQ MDEGGGVVVY QEDYCSGSVM bmy_01925T0/1-1084 ---------- ---------- ---------- ---------- ---------- BACU009228/1-1428 CGLRAARAGG RAGGQQAALA AAVAAMMEIQ MDEGGGVVVY QDDYCSGSVM 101 150 ENSP00000250894/1-1336 SERVSGLAGS IYREFERLIH CYDEEVVKEL MPLVVNVLEN LDSVLSENQE ENSBTAP00000002865/1-1328 SERVSGLAGS IYREFERLIH CYDEEVVKEL MPLVVNVLEN LDSVLSENQE ENSTTRP00000010789/1-1315 SERVSGLAGS IYREFERLIH CYDEEVVKEL MPLVVNVLEN LDSVLSENQE bmy_01925T0/1-1084 ---------- ---------- ---------- ---------- ---------- BACU009228/1-1428 SERVSGLAGS IYREFERLIH CYDEEVVKEL MPLVVNVLEN LDSVLSENQE 151 200 ENSP00000250894/1-1336 HEVELELLRE DNEQLLTQYE REKALRRQAE EKFIEFEDAL EQEKKELQIQ ENSBTAP00000002865/1-1328 HEVELELLRE DNEQLLTQYE REKSLRKQAE EKFIEFEDAL EQEKKELQIQ ENSTTRP00000010789/1-1315 HEVELELLRE DNEQLLTQYE REKALRKQAE EKFIEFEDAL EQEKKELQTQ bmy_01925T0/1-1084 ---------- ---------- ---------- ---------- ---------- BACU009228/1-1428 HEVELELLRE DNEQLLTQYE REKALRKQAE EKFIEFEDAL EQEKKELQTQ 201 250 ENSP00000250894/1-1336 VEHYEFQTRQ LELKAKNYAD QISRLEERES EMKKEYNALH QRHTEMIQTY ENSBTAP00000002865/1-1328 VEHYEFQTRQ LELKAKNYAD QISRLEERES EMKKEYNALH QRHTEMIQTY ENSTTRP00000010789/1-1315 VEHYDFQTRQ LELKAKNYAD QISRLEERES EMKKEYNALH QRHTEMIQTY bmy_01925T0/1-1084 ---------- ---------- ---------- ---------- ---------- BACU009228/1-1428 VEHYDFQTRQ LELKAKNYAD QISRLEERES EMKKEYNALH QRHTEMIQTY 251 300 ENSP00000250894/1-1336 VEHIERSKMQ QVGGNSQTES SLPGR-RKER PTSLNVFPLA DGTVRAQIGG ENSBTAP00000002865/1-1328 VEHIERSKMQ QVGGNSQTEG SLPGR-RKER PTSLSVFPLA DGSVRAQMGG ENSTTRP00000010789/1-1315 VEHIERSKMQ QVGGNSQTES TLPGRSRKER PTSLSVFPLT DGMVRAQMGG bmy_01925T0/1-1084 ---------- ---------- ---------- ---------- ---------- BACU009228/1-1428 VEHIERSKMQ QVGGNSQTES TLPGR-RKER PTSLSVFPLT DGVVRAQMGG 301 350 ENSP00000250894/1-1336 KLVPAGDHWH LSDLGQLQSS SSY--QCPQD EMSESGQSSA AATPSTTGTK ENSBTAP00000002865/1-1328 KPVPAGDHWH LSDLGQLQLS SSY--QCPQD EMSESGQSSA AATPSTTGTK ENSTTRP00000010789/1-1315 KLMPAGDHWH LSDLGQLQLS SSY--QCPQD EMSESGQSSA AATPSTTGTK bmy_01925T0/1-1084 ---------- ---------- ---------- -MSESGQSSA AATPSTTGTK BACU009228/1-1428 KLMPAGDHWH LSDLGQLQLS SSYQPQCPQD EMSESGQSSA AATPSTTGTK 351 400 ENSP00000250894/1-1336 SNTPTSSVPS AAVTPLNESL QPLGDYGVGS KNSKRAREKR DSRNMEVQVT ENSBTAP00000002865/1-1328 SNTPTSSVPS AAVTPLSEGL QPLGDY-GGS KNGKRAREKR NSRNMEVQVT ENSTTRP00000010789/1-1315 SNTPTSSVPS AAVTPLSEGL QPLGDYSGSS KNNKRAREKR NSRNMEVQVT bmy_01925T0/1-1084 SNTPTSSVPS AAVTPLSEGL QPLGDYSGSS KNNKRAREKR NSRNMEVQVT BACU009228/1-1428 SNTPTSSVPS AAVTPLSEGL QPLGDYSGSS KNNKRAREKR NSRNMEVQVT 401 450 ENSP00000250894/1-1336 QEMRNVSIGM GSSDEWSDVQ DIIDSTPELD MCPETRLDRT GSSPTQGIVN ENSBTAP00000002865/1-1328 QEMRNVSIGM GSSDEWSDVQ DIIDSTPELD MGREPRLDRT GSSPTQGIVN ENSTTRP00000010789/1-1315 QEMRNVSIGM GSSDEWSDVQ DIIDSTPELD MGREPRLDRT GSSPTQGIVN bmy_01925T0/1-1084 QEMRNVSIGM GSSDEWSDVQ DIIDSTPELD MGREPRLDRT GSSPTQGIVN BACU009228/1-1428 QEMRNVSIGM GSSDEWSDVQ DIIDSTPELD MGREPRLDRT GSSPTQGIVN 451 500 ENSP00000250894/1-1336 KAFGINTDSL YHELSTAGSE VIGDVDEGAD LLGEFSV-RD DFFGMGKEVG ENSBTAP00000002865/1-1328 KAFGINTDSL YHELSTAGSE VIGDVDEGAD LLGEFS---- ---GMGKEVG ENSTTRP00000010789/1-1315 KAFGINTDSL YHELSTAGSE VIGDVDEGAD LLGNNSI--P FVSGMGKEVG bmy_01925T0/1-1084 KAFGINTDSL YHELSTAGSE VIGDVDEGAD LTGTAPIVRD DFFGMGKEVG BACU009228/1-1428 KAFGINTDSL YHELSTAGSE VIGDVDEGAD LL-------- ---GMGKEVG 501 550 ENSP00000250894/1-1336 NLLLENSQLL ETKNALNVVK NDLIAKVDQL SGEQEVLRGE LEAAKQAKVK ENSBTAP00000002865/1-1328 NLLLENSQLL ETKNALNVVK NDLIAKVDQL SGEQEALKGD LEAARQAKLR ENSTTRP00000010789/1-1315 NLLLENSQLL ETKNALNVVK NDLIAKVDQL SGEQEVLKGD LEAARQAKLR bmy_01925T0/1-1084 NLLLENSQLL ETKNALNVVK NDLIAKVDQL SGEQEVLKGD LEAARQAKLR BACU009228/1-1428 NLLLENSQLL ETKNALNVVK NDLIAKVDQL SGEQEVLKGD LEAARQAKLR 551 600 ENSP00000250894/1-1336 LENRIKELEE ELKRVKSEAI IARREPKEEA EDVSSYLCTE SDKIPMAQRR ENSBTAP00000002865/1-1328 LENRIKDLEE ELRRVKSEAI TAHREPKEEV EDVSSCLCTE LDKIPMAQRR ENSTTRP00000010789/1-1315 LENRIKDLEE ELRRVKSEAI IAHREPKEEV EDVSSYLCTE LDKIPMAQRR bmy_01925T0/1-1084 LENRIKDLEE ELRRVKSEAI IAHREPKEEV EDVSSYLCTE LDKIPMAQRR BACU009228/1-1428 LENRIKDLEE ELRRVKSEAI IAHREPKEEV EDVSSYLCTE LDKIPMAQRR 601 650 ENSP00000250894/1-1336 RFTRVEMARV LMERNQYKER LMELQEAVRW TEMIRASREH PSVQEKKKST ENSBTAP00000002865/1-1328 RFTRVEMARV LMERNQYKER LMELQEAVRW TEMIRASREH PSVQEKKKST ENSTTRP00000010789/1-1315 RFTRVEMARV LMERNQYKEX XXXXXXXXXX XXXXXASREH PTVQEKKKST bmy_01925T0/1-1084 RFTRVEMARV LMERNQYKER LMELQEAVRW TEMIRASREH PSVQEKKKST BACU009228/1-1428 RFTRVEMARV LMERNQYKER LMELQEAVRW TEMIRASREH PSVQEKKKST 651 700 ENSP00000250894/1-1336 IWQFFSRLFS SSSSPPPAKR PYPSVNIHYK SPTTAGFSQR RNHAMCPISA ENSBTAP00000002865/1-1328 IWQFFSRLFS SSSSPPPAKR SYPSVNIHYK SPTTAGFSQR RNHGMCQSSA ENSTTRP00000010789/1-1315 IWQFFSRLFS SSSSPPPAKR SYPSVNIHYK SPTTAGFSQR RSHAMCQISA bmy_01925T0/1-1084 IWQFFSRLFS SSSSPPPAKR SYPSVNIHYK SPTTAGFSQR RSHAMCQISA BACU009228/1-1428 IWQFFSRLFS SSSSPPPAKR SYPSMNIHYK SPTTAGFSQR RSHAMCQISA 701 750 ENSP00000250894/1-1336 GSRPLEFFPD DDCTSSARRE QKREQYRQVR EHVRNDDGRL QACGWSLPAK ENSBTAP00000002865/1-1328 GSRPLEFFPD DDCTSSARRE QKREQYRQVR EHVRNDDGRL QACGWSLPAK ENSTTRP00000010789/1-1315 GSRPLEFFPD DDCTSFASGE QK-EHCRQLS EHVRRDDGRL QACGWSLPAK bmy_01925T0/1-1084 GSRPLEFFPD DDCTSSARRE QKREQYRQVR EHVRNDDGRL QACGWSLPAK BACU009228/1-1428 GSRPLEFFPD DDCTSSARRE QKREQYRQVR EHVRNDDGRL QACGWSLPAK 751 800 ENSP00000250894/1-1336 YKQLSPNGGQ EDTRMKNVPV PVYCRPLVEK DPTMKLWCAA GVNLSGWRPN ENSBTAP00000002865/1-1328 YKQLSPNGGQ EDTRMKNVPV PVYCRPLVEK DPTMKLWCAA GVNLSGWKLS ENSTTRP00000010789/1-1315 YKQLSPNGGQ EDTRMKNVPV PVYCRPLVEK DPTMKLWCAA GVNLSGWKLS bmy_01925T0/1-1084 YKQLSPNGGQ EDTRMKNVPV PVYCRPLVEK DPTMKLWCAA GVNLSGWKLS BACU009228/1-1428 YKQLSPNGGQ EDTRMKNVPV PVYCRPLVEK DPTMKLWCAA GVNLSGWKLS 801 850 ENSP00000250894/1-1336 EDDAGNGVKP APGRDPLTCD REGDGEPKSA HTSPEKKKAK ELPEMDATSS ENSBTAP00000002865/1-1328 EDGPGNGVKP APGRDPLTCD REVEGEAKSN HASPEKKKAK ELPEADATSS ENSTTRP00000010789/1-1315 EDDPGNGVKP VPGRDPLTCD REVEGETKSN HASPEKKKAK ELPEADATSS bmy_01925T0/1-1084 EDDPGNGVKP VPGRDPLTCD REVEGETKSN HASPEKKKAK ELPEADATSS BACU009228/1-1428 EDDPGNGVKP VPGRDPLTCD REVEGETKSN HASPEKKKAK ELPEADATSS 851 900 ENSP00000250894/1-1336 RVWILTSTLT TSKVVIIDAN QPGTVVDQFT VCNAHVLCIS SIPAASDSDY ENSBTAP00000002865/1-1328 RVWILTSTLT TSKVVVIDAN QPGTVVDQFT VCNAHVLCIS SIPAASDGDY ENSTTRP00000010789/1-1315 RVWILTSTLT TSKVVIIDAN QPGTVVDQFT VCNAHVLCIS SIPAASDGDY bmy_01925T0/1-1084 RVWILTSTLT TSKVVIIDAN QPGTVVDQFT VCNAHVLCIS SIPAASDGDY BACU009228/1-1428 RVWILTSTLT TSKVVIIDAN QPGTVVDQFT VCNAHVLCIS SIPAASDGDY 901 950 ENSP00000250894/1-1336 PPGEMFLDSD VNPEDPGADG VLAGITLVGC ATRCNVPRSN CSSRGDTPVL ENSBTAP00000002865/1-1328 PPGEIFLDSD VNPEDSGADG VLAGITLVGC ATRCNVPRSN CSSRGDTPVL ENSTTRP00000010789/1-1315 PPGEIFLDSD VNPEDSSADG VLAGITLVGC ATRCNVPRSN CSSRGDTPVL bmy_01925T0/1-1084 PPGEIFLDSD VNPEDSSADG VLAGITLVGC ATRCNVPRSN CSSRGDTPVL BACU009228/1-1428 PPGEIFLDSD VNPEDSSADG VLAGITLVGC ATRCNVPRSN CSSRGDTPVL 951 1000 ENSP00000250894/1-1336 DKGQGEVATI ANGKVNPSQS TEEATEATEV PDPGPSEPET ATLRPGPLTE ENSBTAP00000002865/1-1328 DKGQGEVSAV ANGKVNPAPS TEEATEATEV PDAGPSEAEA AAVRPGPLTE ENSTTRP00000010789/1-1315 DKGQGEVAAV ANGKVNPSQS TEEATEAMEV PDSGPSEAEA AAVRPGPLTE bmy_01925T0/1-1084 DKGQGEVAAV ANGKVNPSQS TEEATEAMEV PDSGPSEAEA AAVRPGPLTE BACU009228/1-1428 DKGQGEVAAV ANGKVNPSQS TEEATEAMEV PDSGPSEAEA AAVRPGPLTE 1001 1050 ENSP00000250894/1-1336 HVFTDPAPTP SSGPQPGSEN GPEPDSSSTR PEPEPSGDPT GAGSSAAPTM ENSBTAP00000002865/1-1328 HVFTDPAPTP PPSTQPDSEN GPEADVSGVQ PEPEPSGDPA G-STSAAPTM ENSTTRP00000010789/1-1315 HVFTDPAPAP PTSTQPDSEN GLE-DVSGVQ PEPEPSGDAA GASSSAAPTM bmy_01925T0/1-1084 HVFTDPAPAP PPSAQPDSEN GLETDVSGVQ PEPEPSGDAM GASSSAAPTM BACU009228/1-1428 HVFTDPAPAP PPSAQPDSEN GLETDVSGVQ PEPEPSGDAM GASSSAAPTM 1051 1100 ENSP00000250894/1-1336 WLGAQNGW-- ---------- ---------- ---LYVHSAV ANWKKCLHSI ENSBTAP00000002865/1-1328 WLGAQNGW-- ---------- ---------- ---LYVHSAV ANWKKCLHSI ENSTTRP00000010789/1-1315 WLGAQNGW-- ---------- ---------- ---LYVHSAV ANWKKCLHSI bmy_01925T0/1-1084 WLGAQNGW-- ---------- ---------- ---LYVHSAV ANWKKCLHSI BACU009228/1-1428 WLGAQNGWEA GPWGPGWGGC PGGAPTHPPS SRRLYVHSAV ANWKKCLHSI 1101 1150 ENSP00000250894/1-1336 KLKDSVLSLV HVKGRVLVAL ADGTLAIFHR GEDGQWDLSN YHLMDLGHPH ENSBTAP00000002865/1-1328 KLKDSVLSLV HVKGRVLVAL ADGTLAIFHR GEDGQWDLSN YHLMDLGHPH ENSTTRP00000010789/1-1315 KLKDSVLSLV HVKGRVLVAL ADGTLAIFHR GEDSQWDLSN YHLMDLGHPH bmy_01925T0/1-1084 KLKDSVLSLV HVKGRVLVAL ADGTLAIFHR GEDSQWDLSN YHLMDLGHPH BACU009228/1-1428 KLKDSVLSLV HVKGRVLVAL ADGTLAIFHR GEDSQWDLSN YHLMDLGHPH 1151 1200 ENSP00000250894/1-1336 HSIRCMAVVY DRVWCGYKNK VHVIQPKTMQ IE------KS FDAHPRRESQ ENSBTAP00000002865/1-1328 HSIRCMAVVH DRVWCGYKNK VHVIQPKTMQ IE------KS FDAHPRRESQ ENSTTRP00000010789/1-1315 HSIRCMAVVY DRVWCGYKNK VHVIQPKTMQ IEATLTPQKS FDAHPRRESQ bmy_01925T0/1-1084 HSIRCMAVVY DRVWCGYKNK VHVIQPKTMQ IE------KS FDAHPRRESQ BACU009228/1-1428 HSIRCMAVVY DRVWCGYKNK VHVIQPKTMQ IE------KS FDAHPRRESQ 1201 1250 ENSP00000250894/1-1336 VRQLAWIGDG VWVSIRLDST LRLYHAHTHQ HLQDVDIEPY VSKMLGTGKL ENSBTAP00000002865/1-1328 VRQLAWIGDG VWVSIRLDST LRLYHAHTHQ HLQDVDIEPY VSKMLGTGKL ENSTTRP00000010789/1-1315 VRQLAWIGDG VWVSIRLDST LRLYHAHTHQ HLQDVDIEPY VSKML----- bmy_01925T0/1-1084 VRQLAWIGDG VWVSIRLDST LRLYHAHTHQ HLQDVDIEPY VSKMLGTGKL BACU009228/1-1428 VRQLAWIGDG VWVSIRLDST LRLYHAHTHQ HLQDVDIEPY VSKMLGKGKL 1251 1300 ENSP00000250894/1-1336 GFSFVRITAL LVAGSRLWVG TGNGVVISIP LTETVVLHRG QLLGLRANKT ENSBTAP00000002865/1-1328 GFSFVRITAL LIAGNRLWVG TGNGVVISIP LTETVVLHRG QLLGLRANKT ENSTTRP00000010789/1-1315 ---------- ---------- TPXXXXISIP LTETVVLHRG QLLGLRANKS bmy_01925T0/1-1084 GFSFVRITAL LIAGNRLWVG TGNGVVISIP LTETVVLHRG QLLGLRANKT BACU009228/1-1428 GFSFVRITAL LIAGNRLWVG TGNGVVISIP LTETVVLHRG QLLGLRANKT 1301 1350 ENSP00000250894/1-1336 SPTSGEGARP GGIIHVYGDD SSDRAASSFI PYCSMAQAQL CFHGHRDAVK ENSBTAP00000002865/1-1328 SPTSGEGARP GGVIHVYGDD SSDRAASSFI PYCSMAQAQL CFHGHRDAVK ENSTTRP00000010789/1-1315 SPTSGEGARP GGIIHVYGDD SSDKSASSFI PYCSMAQAQL CFHGHRDAVK bmy_01925T0/1-1084 SPTSGEGARP GGIIHVYGDD SSDKSASSFI PYCSMAQAQL CFHGHRDAVK BACU009228/1-1428 SPTSGEGTRP GGIIHVYGDD SSDKSASSFI PYCSMAQAQL CFHGHRDAVK 1351 1400 ENSP00000250894/1-1336 FFVSVPGNVL ATLNGSVLDS PAEGPGPAAP ASEVEGQKLR NVLVLSGGEG ENSBTAP00000002865/1-1328 FFVSVPGNVL ATLNGSVLDS PSEGPGPTAP AADAEAQKLK NVLVLSGGEG ENSTTRP00000010789/1-1315 FFVSVPGNVL ATLNGSVLDS PSESPGPTAP TADTEAQKLK NVLVLSGGEG bmy_01925T0/1-1084 FFVSVPGNVL ATLNGSVLDS PSESPGPTAP TADAEAQKLK NVLVLSGGEG BACU009228/1-1428 FFVSVPGNVL ATLNGSVLDS PSESPGPTAP TADAEAQKLK NVLVLSGGEG 1401 1450 ENSP00000250894/1-1336 YIDFRIGDGE DDETEEGAGD MSQVKPVLSK AERSHIIVWQ VSYTPE ENSBTAP00000002865/1-1328 YIDFRIGDGE DDEPEEGAGD VSQVKPVLSK AERSHIIVWQ VSYTPE ENSTTRP00000010789/1-1315 YIDFRIGDGE DDEPEEGAGD VSQVKPLLSK AERSHIIVWQ VSYTPE bmy_01925T0/1-1084 YIDFRIGDGE DDEPEEGAGD VSQVKPLLSK AERSHIIVWQ VSYTPE BACU009228/1-1428 YIDFRIGDGE DDEPEEGAGD VSQVKPLLSK AERSHIIVWQ VSYTPE