KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:21 2014 Check: 00 .. Name: ENSP00000250003/1-320 Len: 320 Check: 588 Weight: 1.00 Name: ENSBTAP00000002868/1-318 Len: 320 Check: 4410 Weight: 1.00 Name: bmy_03612T0/1-319 Len: 320 Check: 6464 Weight: 1.00 Name: ENSTTRP00000013150/1-319 Len: 320 Check: 6520 Weight: 1.00 Name: BACU005619/1-240 Len: 320 Check: 2176 Weight: 1.00 // 1 50 ENSP00000250003/1-320 MELLSPPLRD VDLTAPDGSL CSFATTDDFY DDPCFDSPDL RFFEDLDPRL ENSBTAP00000002868/1-318 MELLSPPLRD VDLTGPDGSL CNFATADDFY DDPCFDSPDL RFFEDLDPRL bmy_03612T0/1-319 MELLSPPIRD VDLTGPDGSL CNFATADDFY DDPCFDSPDL RFFEDLDPRL ENSTTRP00000013150/1-319 MELLSPPIRD VDLTGPDGSL CNFATADDFY DDPCFDSPDL RFFEDLDPRL BACU005619/1-240 MELLSPPIRD VDLTGPDGSL CNFATADDFY DDPCFDSPDL RFFEDLDPRL 51 100 ENSP00000250003/1-320 MHVGALLKPE EHSHFPAAVH PAPGAREDEH VRAPSGHHQA GRCLLWACKA ENSBTAP00000002868/1-318 VHVGALLKPE EHSHFPAAAH PAPGAREDEH VRAPSGHHQA GRCLLWACKA bmy_03612T0/1-319 VHVGALLKPE EHSHFPAAAH PVPGAREDEH VRAPSGHHQA GRCLLWACKA ENSTTRP00000013150/1-319 VHVGALLKPE EHSHFPAAAH PVPGAREDEH VRAPSGHHQA GRCLLWACKA BACU005619/1-240 VHVGALLKPE EHSHFPAAAH PVPGAREDEH VRAPSGHHQA GRCLLWACKA 101 150 ENSP00000250003/1-320 CKRKTTNADR RKAATMRERR RLSKVNEAFE TLKRCTSSNP NQRLPKVEIL ENSBTAP00000002868/1-318 CKRKTTNADR RKAATMRERR RLSKVNEAFE TLKRCTSSNP NQRLPKVEIL bmy_03612T0/1-319 CKRKTTNADR RKAATMRERR RLSKVNEAFE TLKRCTSSNP NQRLPKVEIL ENSTTRP00000013150/1-319 CKRKTTNADR RKAATMRERR RLSKVNEAFE TLKRCTSSNP NQRLPKVEIL BACU005619/1-240 CKRKTTNADR RKAATMRERR RLSKVNEAFE TLKRCTSSNP NQRLPKVEIL 151 200 ENSP00000250003/1-320 RNAIRYIEGL QALLRDQDAA PPGAAAAFYA PGPLPPGRGG EHYSGDSDAS ENSBTAP00000002868/1-318 RNAIRYIEGL QALLRDQDAA PPGAAAAFYA PGPLPPGRSG EHYSGDSDAS bmy_03612T0/1-319 RNAIRYIEGL QALLRDQDAA PPGAAAAFYA PGPLPPGRGG EHYSGDSDAS ENSTTRP00000013150/1-319 RNAIRYIEGL QALLRDQDAA PPGAAAAFYA PGPLPPGRGG EHYSGDSDAS BACU005619/1-240 RNAIRYIEGL QALLRDQDAA PPGAAAAFYA PGPLPPGRGG EHYSGDSDAS 201 250 ENSP00000250003/1-320 SPRSNCSDGM MDYSGPPSGA RRRNCYEGAY YNEAPSEPRP GKSAAVSSLD ENSBTAP00000002868/1-318 SPRSNCSDGM MDYSGPPSGA RRRNCYDRTY YSEAPNEPRP GKSAAVSSLD bmy_03612T0/1-319 SPRSNCSDGM MDYSGPPSGA RRRNCYDGTY YSEAPNEPRP GKSAAVSSLD ENSTTRP00000013150/1-319 SPRSNCSDGM MDYSGPPSGA RRRNCYEGTY YSEAPNEPRP GKSAAVSSLD BACU005619/1-240 SPRSNCSDGM MDYSGPPSGA RRRNCYDGTY YSEAPN---- ---------- 251 300 ENSP00000250003/1-320 CLSSIVERIS TESPAAPALL LADVPSESPP RRQEAAAPSE GESSGDPTQS ENSBTAP00000002868/1-318 CLSSIVERIS TESPAAPALL LADAPPESSP GPQE-AAGSE VE-RGTPAPS bmy_03612T0/1-319 CLSSIVERIS TESPAAPALL LADAPPASSP GPQEAAAGSE VE-RGSPTPS ENSTTRP00000013150/1-319 CLSSIVERIS TESPAAPALL LADAPPASSP GPQEAAAGSE VE-RGSPTPS BACU005619/1-240 ---------- ---------- ---------- -----GAG-- ---------- 301 350 ENSP00000250003/1-320 PDAAPQCPAG ANPNPIYQVL ENSBTAP00000002868/1-318 PDTAPQGLAG ANPNPIYQVL bmy_03612T0/1-319 PDTAPQCPAG ANPNPIYQVL ENSTTRP00000013150/1-319 PDTAPQCPAG ANPNPIYQVL BACU005619/1-240 ---------- ---------L