KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:22 2014 Check: 00 .. Name: ENSP00000310841/1-539 Len: 612 Check: 4792 Weight: 1.00 Name: ENSBTAP00000002878/1-476 Len: 612 Check: 8271 Weight: 1.00 Name: ENSTTRP00000008340/1-428 Len: 612 Check: 5442 Weight: 1.00 Name: bmy_06754T0/1-579 Len: 612 Check: 7232 Weight: 1.00 Name: BACU004310/1-473 Len: 612 Check: 1211 Weight: 1.00 // 1 50 ENSP00000310841/1-539 MAVCARLCGV GPSRGCRRRQ QRRGPAETAA ADSEPDTDPE EERIEAS--- ENSBTAP00000002878/1-476 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008340/1-428 ---------- ---------- ---------- ---------- ---------- bmy_06754T0/1-579 MAVCARLCGV GPSRGCRRRQ QRRGPAEAAA ADSEPDTDPE EERIEAGVAA BACU004310/1-473 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000310841/1-539 -AGVGGGLCA GPSPPPPRCS LLELPPELLV EIFASLPGTD LPSLAQVCTK ENSBTAP00000002878/1-476 ---------- ---------- ---------- ---SAPPGGG TPRXAQVCTK ENSTTRP00000008340/1-428 ---------- ---------- ---------- ---------- ------FCTK bmy_06754T0/1-579 LAGAGGGRSA GPS-SPPRCS LLELPPELLV EIFASLPGTD LPSLAQVCTK BACU004310/1-473 ---------- ---------- ---------- ------PGTD LPSLAQVCTK 101 150 ENSP00000310841/1-539 FRRILHTDTI WRRRCREEYG VCENLRKLEI TGVSCRDVYA K--------- ENSBTAP00000002878/1-476 FRRILHTDTI WRRRCREEYG VCENLRKLEI TGVSCRDVYA KRINPRVKSG ENSTTRP00000008340/1-428 -SRILHTDTI --ARCR-EYG VCENLRKLEI TGVSCRDVYA K--------- bmy_06754T0/1-579 FRRILHTDTI WRRRCREEYG VCENLRKLEI TGVSCRDVYA KCINPRVKSG BACU004310/1-473 FRRILHTDTI WRRRCREEYG VCENLRKLEI TGVSCRDVYA KCINPRVKSG 151 200 ENSP00000310841/1-539 ---------- ---------- LLHRYRHILG LWQPDIGPYG GLLNVVVDGL ENSBTAP00000002878/1-476 RFMRILPDYE HMKYRDVYTC LLHRYRHILG LWQPDIGPYG GLLNVVVDGL ENSTTRP00000008340/1-428 ---------- ---------- LLHRYRHILG LWQPDIGPYG GLLNVVVDGL bmy_06754T0/1-579 RFMKILPDYE HMEYRDVYTC LLHRYRHILG LWQPDIGPYG GLLNVVVDGL BACU004310/1-473 RFMKILPDYE HMEYRDVYTC LLHRYRHILG LWQPDIGPYG GLLNVVVDGL 201 250 ENSP00000310841/1-539 FIIGWMYLPP HDPHVDDPMR FKPLFRIHLM ERKAATVECM YGHKGPHHGH ENSBTAP00000002878/1-476 FIIGWMYLPP HDPHVDDPMR FKPLFRIHLM ERKSATVECM YGHRGPHNGH ENSTTRP00000008340/1-428 FIIGWMYLPP HDPHVDDPMR FKPLFRIHLM ERKSATVECM YGHRGPHNGH bmy_06754T0/1-579 FIIGWMYLPP HDPHVDDPMR FKPLFRIHLM ERKSATVECM YGHRGPHNGH BACU004310/1-473 FIIGWMYLPP HDPHVDDPMR FKPLFRIHLM ERKSATVECM YGHRGPHNGH 251 300 ENSP00000310841/1-539 IQ-------- ---------- ---------- ---------I VKKDEFSTKC ENSBTAP00000002878/1-476 VQ-------- ---------- ---------- ---------I VKKDEFSTKC ENSTTRP00000008340/1-428 VQ-------- ---------- ---------- ---------I VKKDEFSTKC bmy_06754T0/1-579 VQVSRRGSVC RASAWKQTFC SRMWAWQVAR LRAGLSSVSV VKKDEFSTKC BACU004310/1-473 VQ-------- ---------- ---------- ---------V VKKDEFSTKC 301 350 ENSP00000310841/1-539 NQTDHHRMSG GRQEEFRTWL REEWGRTLED IFHEHMQELI LMKFIYTSQY ENSBTAP00000002878/1-476 NQTDHHRMSG GRQEEFRTWL REEWGRTLED IFHEHMQELI LMKFIYTSQY ENSTTRP00000008340/1-428 NQTDHHRMSG GRQEEFRTWL REEWGRTLED IFHEHMQELI LMKFIYTSQY bmy_06754T0/1-579 NQTDHHRMSG GRQEEFRTWL REEWGRTLED IFHEHMQELI LMKFIYTSQY BACU004310/1-473 NQTDHHRMSG GRQEEFRTWL REEWGRTLED IFHEHMQELI LMKFIYTSQY 351 400 ENSP00000310841/1-539 DNCLTYRRIY LPPSRPDDLI KPGLFKGTYG SHGLEIVMLS FHGRRARGTK ENSBTAP00000002878/1-476 DNCLTYRRIY LPPSRPDDLI RPGLFKGTYG SHGLEIVMLS FHGKHARGTK ENSTTRP00000008340/1-428 DNCLTYRRIY LPPSHPDDLI RPGLFKGTYG SHGLEIVMLS FHGKHARGTK bmy_06754T0/1-579 DNCLTYRRIY LPPSHPDDLI RPGLFKGTYG SHGLEI---- ---------- BACU004310/1-473 DNCLTYRRIY LPPSHPDDLI RPGLFKGTYG SHGLEIVMLS FHGKHARGTK 401 450 ENSP00000310841/1-539 ITGDPNIPAG QQTVEIDLRH RIQLPDLENQ RNFNELSRIV LEVRERVR-- ENSBTAP00000002878/1-476 ITGDPNIPAG QQTVEIDLRH RIQLPDAESL HDFNELSRVV LEVREQVRKE ENSTTRP00000008340/1-428 ITGDPNIPAG QQTVEIDLRH RIHLPDIESL RDFNELSRIV LEVREQVR-- bmy_06754T0/1-579 --GDPNIPAG QQTVEIDLRH RIHLPDIESL RDFNELSRIV LEVREQVR-- BACU004310/1-473 ITGDPNIPAG QQTVEIDLRH RIHLPDIESL RDFNELSRIV LEVREQVR-- 451 500 ENSP00000310841/1-539 -QEQQEGGHE AGEGRGRQGP RESQPSPAQP RAEAPSKGPD GTPGEDGGEP ENSBTAP00000002878/1-476 QEQEQEGGPE DAEGLGQQSP --------QP REEPPAEPAQ A-PGDGGAA- ENSTTRP00000008340/1-428 QEQQQEGGPE DAAGLGRQSP --------SP -AEPPAEG-Q G-PGDGGAE- bmy_06754T0/1-579 QEQQQEGGPE DAEGLGRQSP --------QP CAEPPAEHAK G-PGDGGAE- BACU004310/1-473 QEQQQEGGPE DAEGLGRQSP --------QP CAEPPAEQAK G-PGDGGAE- 501 550 ENSP00000310841/1-539 GDAVAAAEQP AQCGQGQPFV LPVGVSSRNE DYPRTCRMCF YGTGLIAGHG ENSBTAP00000002878/1-476 ----AVAEPP AQS--GQPFV LPVGVSSRNE DYPRTCRMCF YGTGLIAGHG ENSTTRP00000008340/1-428 ----AAAEPP AQSGQGQPFV LPVGVSSRNE DYPRTCRMCF YGTGLIAGHG bmy_06754T0/1-579 ----AAAEPP AQSGQGQPFV LPVGVSSRNE DYPRTCRMCF YGTGLIAGHG BACU004310/1-473 ----AAAEPP AQSGQGQPFV LPVGVSSRNE DYPRTCRMCF YGTGLIAGHG 551 600 ENSP00000310841/1-539 FTSPERTPGV FILFDEDRFG FVWLELKSFS LYSRVQATFR NADAPSPQAF ENSBTAP00000002878/1-476 FTSPERTPGV FVLFDEDRFG FIWLELKSFS LYSRVQAAFR NADAPSPQAF ENSTTRP00000008340/1-428 FTSPERTPGV FVLFDEDRFG FIWLELKSFS LYSRVQAAFR NADAPSPQAF bmy_06754T0/1-579 FTSPERTPGV FVLFDEDRFG FIWLELKSFS LYSRVQAAFR NADAPSPQAF BACU004310/1-473 FTSPERTPGV FVLFDEDRFG FIWLELKSFS LYSRVQAAFR NADAPSPQAF 601 650 ENSP00000310841/1-539 DEMLKNIQSL TS ENSBTAP00000002878/1-476 EEMLKNIQSL TS ENSTTRP00000008340/1-428 EEMLKNIQSL AS bmy_06754T0/1-579 EEMLKNIQSL AS BACU004310/1-473 EEMLKNIQSL AS