KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:23 2014 Check: 00 .. Name: ENSTTRP00000016199/1-515 Len: 1991 Check: 8731 Weight: 1.00 Name: ENSP00000434359/1-559 Len: 1991 Check: 8661 Weight: 1.00 Name: ENSBTAP00000002882/1-530 Len: 1991 Check: 474 Weight: 1.00 Name: bmy_07590T0/1-607 Len: 1991 Check: 9994 Weight: 1.00 Name: BACU001472/1-1903 Len: 1991 Check: 7314 Weight: 1.00 // 1 50 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 MEAASEDSLA RQPQDRAAAQ AAGPEAGVRV APELACQQSL LAQETWCGLL 51 100 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 ELGPGSSAPG FLDPNTLEQL PYRELLGRCV RAPSTGLGLL PLKVTFRALS 101 150 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 GALSLAELLE AGVLDGETAR GLREGRLAVP DVGARTEVQR HLQGTGGVAG 151 200 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 VVLLPAGHKK SFFQATAEHL LPMGATLPVL EAQDATCMLV DPATGRQLWV 201 250 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 DEAVRAGLFG PELHRQLLAA EQVVTGYHDP FSGTRIPLFQ AMKRELVDRP 251 300 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 LALRLLVAQL ATGGLVCPAR RLRLPLEATL QDHLCWVRIP VTPGELLRAE 301 350 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 IINQGVYEQL ERGRTMAQDV GSLASVQRYL RGTGCIAGLL LPGSQEPLSI 351 400 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 HEACRKGLLR PGTALTLLEA QAATGFITER KRGAMKKDLI VREHGICLLE 401 450 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 AQIATGGVID PVHSRRLPVD VAYRRGYFDK EMNHVLEDPS DDTKGFFDPN 451 500 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 LQLLECCVRD PNTGLYVLQV VKKGETYIEK EERACPGVQS LELSLERLLE 501 550 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 IIPITVKETE KQNQVIKVAA IGVGGDSCRA VQLGNHRTHN LVPGDEEKAI 551 600 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 ETGLGTQTAR GAGGHGGIVD PLHHHRLPLD TAYRRGSLDQ NTYPLAEEQK 601 650 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 CMHKRFVDPN TQEKGTYQEL QERGHREEGT DWALFPRVSG RWDSNFINKA 651 700 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 TRRALKAEQV DVTVGRFKGQ RPSVWELLNS EYLTEDKKRE LVVKYKRNTT 701 750 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 RALEKASSLR RTGGRAGHRG GRQKCQGVKR YLEGTSCIAG MLVPAKDEPG 751 800 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 RQEKSIYQAM WKVVLRPGTA LVLLEAQAAT GFVINPVENR RLTVQEAFAA 801 850 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 GMFSSETYQK LLSAKRSVTG YTDPYTGEQI SLFQAVKKDL IVREHGIRLL 851 900 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 QAQIATGSVI DPMHSRRLPV DVAYRHGYFN KGMNRVLEDP SDNTKGFFNP 901 950 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 NTHENFTYVQ LLQRATPDPE TGLLFLLCLE KPSAESGEKA IPECGKEKIQ 951 1000 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 IMFEQLVLVD HPNIVKLHKY WLDASEARAR VIFITEYVSS GSLKQFLKKT 1001 1050 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 KKNHKAMNAR AWKRWCTQIL SALSFLHACS PPIIHGNLTS DTIFIQHNGL 1051 1100 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 IKIGSALPDD LRSPICAERE EPRNLHFFPP EYGEVADGTA VDIFSFGMCA 1101 1150 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 LEMAVLEIQA NGDTRVTEEA IARARHSLSD PNMREFILSC LARDPAHRPS 1151 1200 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 AHSLLFHRVL FEVHSLKLLA AHCFIQHQYL MPENMVEEKA KATDPHTVLA 1201 1250 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 EIPRPPRPPL QWRYSEVSCL ELDKFLEDVR NGIYPLMNFA AARPLGLPRV 1251 1300 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 LAPPPEEAPK AKTPTPEPFD SETRKVIQMQ CNLERSEDQA RWHLTLLLVL 1301 1350 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---------- ---------- bmy_07590T0/1-607 ---------- ---------- ---------- ---------- ---------- BACU001472/1-1903 EDRLHRQLTY DLLPTDSAQD LAAELVHYGF VHEACATDSP PGPFTQRIPF 1351 1400 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---------- ---------- ENSP00000434359/1-559 ------MATA TIALQVNGQQ GGGSEP---- -AAAAAVVAA GDKWKPPQGT ENSBTAP00000002882/1-530 ---------- ---------- ---------- --MATATIAL G--------T bmy_07590T0/1-607 ---------- ----QVNGQQ GGGSEP---A AAAAAAVVAA GDKWKPSQGT BACU001472/1-1903 FTCHSPPTCT QTDVQVNGQQ GGGSEPAAAA AAAAAAVVAA GDKWKPSQGT 1401 1450 ENSTTRP00000016199/1-515 ----MENGQS TAAKLGLPPL TPEQQEALQK AKKYAMEQSI KSVLVKQTIA ENSP00000434359/1-559 DSIKMENGQS TAAKLGLPPL TPEQQEALQK AKKYAMEQSI KSVLVKQTIA ENSBTAP00000002882/1-530 DSIKMENGQG TAAKLGLPPL TPEQQEALQK AKKYAMEQSI KSVLVKQTIA bmy_07590T0/1-607 DSIKMENGQS TAAKLGLPPL TPEQQEALQK AKKYAMEQSI KSVLVKQTIA BACU001472/1-1903 DSIKMENGQS TAAKLGLPPL TPEQQEALQK AKKYAMEQSI KSVLVKQTIA 1451 1500 ENSTTRP00000016199/1-515 HQQQQLTNLQ MAAVTMGFGD PLSPLQSMAA QRQRALAIMC RVYVGSIYYE ENSP00000434359/1-559 HQQQQLTNLQ MAAVTMGFGD PLSPLQSMAA QRQRALAIMC RVYVGSIYYE ENSBTAP00000002882/1-530 HQQQQLTNLQ MAAVTMGFGD PLSPLQSMAA QRQRALAIMC RVYVGSIYYE bmy_07590T0/1-607 HQQQQLTNLQ ---------- -------MAA QRQRALAIMC RVYVGSIYYE BACU001472/1-1903 HQQQQLTNLQ ---------- -------MAA QRQRALAIMC RVYVGSIYYE 1501 1550 ENSTTRP00000016199/1-515 LGEDTIRQAF APFGPIKSID MSWDSVTMKH K--------- ---------- ENSP00000434359/1-559 LGEDTIRQAF APFGPIKSID MSWDSVTMKH K--------- ---------- ENSBTAP00000002882/1-530 LGEDTIRQAF APFGPIKSID MSWDSVTMKH K--------- ---------- bmy_07590T0/1-607 LGEDTIRQAF APFGPIKSID MSWDSVTMKH KVRLRPPCLA PPLGSPSLTA BACU001472/1-1903 LGEDTIRQAF APFGPIKSID MSWDSVTMKH K--------- ---------- 1551 1600 ENSTTRP00000016199/1-515 -----GFAFV EYEVPEAAQL ALEQMNSVML GGRNIK---- ---------- ENSP00000434359/1-559 -----GFAFV EYEVPEAAQL ALEQMNSVML GGRNIK---- ---------- ENSBTAP00000002882/1-530 -----GFAFV EYEVPEAAQL ALEQMNSVML GGRNIK---- ---------- bmy_07590T0/1-607 CSRVQGFAFV EYEVPEAAQL ALEQMNSVML GGRNIKVRPG AGLGAGSRAA BACU001472/1-1903 -----GFAFV EYEVPEAAQL ALEQMNSVML GGRNIK---- ---------- 1601 1650 ENSTTRP00000016199/1-515 ---------- ---------- ---------- ---VGRPSNI GQAQPIIDQL ENSP00000434359/1-559 ---------- ---------- ---------- ---VGRPSNI GQAQPIIDQL ENSBTAP00000002882/1-530 ---------- ---------- ---------- ---VGRPSNI GQAQPIIDQL bmy_07590T0/1-607 GCALCADVEQ PLQEPAASRP RLTGHSSSLP LPQVGRPSNI GQAQPIIDQL BACU001472/1-1903 ---------- ---------- ---------- ---VGRPSNI GQAQPIIDQL 1651 1700 ENSTTRP00000016199/1-515 AEEARAFNRI YVASVHQDLS DDDIKSVFEA FGKIKSCTLA RDPTTGKHKG ENSP00000434359/1-559 AEEARAFNRI YVASVHQDLS DDDIKSVFEA FGKIKSCTLA RDPTTGKHKG ENSBTAP00000002882/1-530 AEEARAFNRI YVASVHQDLS DDDIKSVFEA FGKIKSCTLA RDPTTGKHKG bmy_07590T0/1-607 AEEARAFNRI YVASVHQDLS DDDIKSVFEA FGKIKSCTLA RDPTTGKHKG BACU001472/1-1903 AEEARAFNRI YVASVHQDLS DDDIKSVFEA FGKIKSCTLA RDPTTGKHKG 1701 1750 ENSTTRP00000016199/1-515 YGFIEYEKAQ SSQDAVSFMN LFDLGGQYLR VGKAVTPPMP LLTPATPGGL ENSP00000434359/1-559 YGFIEYEKAQ SSQDAVSSMN LFDLGGQYLR VGKAVTPPMP LLTPATPGGL ENSBTAP00000002882/1-530 YGFIEYEKAQ SSQDAVSSMN LFDLGGQYLR VGKAVTPPMP LLTPATPGGL bmy_07590T0/1-607 YGFIEYEKAQ SSQDAVSSMN LFDLGGQYLR VGKAVTPPMP LLTPATPGGL BACU001472/1-1903 YGFIEYEKAQ SSQDAVSSMN LFDLGGQYLR VGKAVTPPMP LLTPATPGGL 1751 1800 ENSTTRP00000016199/1-515 PPAAAV-AAA ATAQITAQEA VAGAAVLGTL ATSGLVSPAL TLAQPLGALP ENSP00000434359/1-559 PPAAAVAAAA ATAKITAQEA VAGAAVLGTL GTPGLVSPAL TLAQPLGTLP ENSBTAP00000002882/1-530 PPAAAVAAAA ATAKITAQEA VAGAAVLGTL ATPGLVSPAL TLAQPLGALP bmy_07590T0/1-607 PPAAAVAAAA ATAKITAQEA VAGAAVLGTL ATPGLVSPAL TLAQPLGALP BACU001472/1-1903 PPAAAVAAAA ATAKITAQEA VAGAAVLGTL ATPGLVSPAL TLAQPLGALP 1801 1850 ENSTTRP00000016199/1-515 QAVMAAQAPG VITGVTPARP PIPVTIPSVG VVNPILASPP TLGLLEPKKE ENSP00000434359/1-559 QAVMAAQAPG VITGVTPARP PIPVTIPSVG VVNPILASPP TLGLLEPKKE ENSBTAP00000002882/1-530 QAVMAAQAPG VITGVTPARP PIPVTIPSVG VVNPILASPP TLGLLEPKKE bmy_07590T0/1-607 QAVMAAQAPG VITGVTPARP PIPVTIPSVG VVNPILASPP TLGLLEPKKE BACU001472/1-1903 QAVMAAQAPG VITGVTPARP PIPVTIPSVG VVNPILASPP TLGLLEPKKE 1851 1900 ENSTTRP00000016199/1-515 KEEEELFPES ERPEMLSEQE HMSISGSSAR HMVMQKLLRK QESTVMVLRN ENSP00000434359/1-559 KEEEELFPES ERPEMLSEQE HMSISGSSAR HMVMQKLLRK QESTVMVLRN ENSBTAP00000002882/1-530 KEEEELFPES ERPEMLSEQE HMSISGSSAR HMVMQKLLRK QESTVMVLRN bmy_07590T0/1-607 KEEEELFPES ERPEMLSEQE HMSISGSSAR HMVMQKLLRK QESTVMVLRN BACU001472/1-1903 KEEEELFPES ERPEMLSEQE HMSISGSSAR HMVMQKLLRK QESTVMVLRN 1901 1950 ENSTTRP00000016199/1-515 MVDPKDIDDD LEGEVTEECG KFGAVNRVII YQEKQGEEED AEIIVKIFVE ENSP00000434359/1-559 MVDPKDIDDD LEGEVTEECG KFGAVNRVII YQEKQGEEED AEIIVKIFVE ENSBTAP00000002882/1-530 MVDPKDIDDD LEGEVTEECG KFGAVNRVII YQEKQGEEED AEIIVKIFVE bmy_07590T0/1-607 MVDPKDIDDD LEGEVTEECG KFGAVNRVII YQEKQGEEED AEIIVKIFVE BACU001472/1-1903 MVDPKDIDDD LEGEVTEECG KFGAVNRVII YQEKQGEEED AEIIVKIFVE 1951 2000 ENSTTRP00000016199/1-515 FSVASETHKA IQALNGRWFA GRKVVAEVYD QERFDNSDLS A ENSP00000434359/1-559 FSIASETHKA IQALNGRWFA GRKVVAEVYD QERFDNSDLS A ENSBTAP00000002882/1-530 FSVASETHKA IQALNGRWFA GRKVVAEVYD QERFDNSDLS A bmy_07590T0/1-607 FSVASETHKA IQALNGRWFA GRKVVAEVYD QERFDNSDLS A BACU001472/1-1903 FSVASETHKA IQALNGRWFA GRKVVAEVYD QERFDNSDLS A