KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:24 2014 Check: 00 .. Name: ENSP00000326759/1-1119 Len: 1119 Check: 7228 Weight: 1.00 Name: ENSTTRP00000001874/1-1073 Len: 1119 Check: 7856 Weight: 1.00 Name: bmy_11790T0/1-1011 Len: 1119 Check: 6706 Weight: 1.00 Name: ENSBTAP00000002883/1-1119 Len: 1119 Check: 3892 Weight: 1.00 Name: BACU008172/1-1119 Len: 1119 Check: 6590 Weight: 1.00 // 1 50 ENSP00000326759/1-1119 MSAPSLRARA AGLGLLLCAV LGRAGRSDSG GRGELGQPSG VAAERPCPTT ENSTTRP00000001874/1-1073 ---------- ---------- ---------- ---------- -----RCPVP bmy_11790T0/1-1011 ---------- ---------- -----MASEK PEGTICIPAD QA-----PKS ENSBTAP00000002883/1-1119 MGAPRVRALA AALGLLLCEV LGHAGPAEGG GLEALGPPSG VGAEHQCPTP BACU008172/1-1119 MGAPRLRAPA AALGLLLCAV LGCAGPAEGG GRGALGPPSG VGAEHWCPVP 51 100 ENSP00000326759/1-1119 CRCLGDLLDC SRKRLARLPE PLPSWVARLD LSHNRLSFIK ASSMSHLQSL ENSTTRP00000001874/1-1073 CRCLGDLLDC SRQRLSRLPE PLPPWVARLD LSHNRLSFIK ASSTSHLHSL bmy_11790T0/1-1011 VFVYKGLVDL SN-------- ---------D LTMERLDLSN DLTMERL--- ENSBTAP00000002883/1-1119 CRCFGDLLDC SRQRLAHLPE PLPSWIARLD LSHNRLSFIK ASSLSHLHSL BACU008172/1-1119 CRCLGDLLDC SRQRLSRLPE PLPPWVARLD LSHNRLSFIK ASSMSHLHSL 101 150 ENSP00000326759/1-1119 REVKLNNNEL ETIPNLGPVS ANITLLSLAG NRIVEILPEH LKEFQSLETL ENSTTRP00000001874/1-1073 REVKLNNNEL ETIPNLGPVS ANITLLSLAG NKIVEILPEH LRRFQSLETL bmy_11790T0/1-1011 ---------- ---------- ---VVICQAG NKIVEILPEH LRQFQSLETL ENSBTAP00000002883/1-1119 REVKLNNNEL ETIPNLGPVT ANITLLSLAG NKIVEILPEH LRQFQSLETL BACU008172/1-1119 REVKLNNNEL ETIPNLGPVS ANITLLSLAG NKIVEILPEH LRQFQSLETL 151 200 ENSP00000326759/1-1119 DLSSNNISEL QTAFPALQLK YLYLNSNRVT SMEPGYFDNL ANTLLVLKLN ENSTTRP00000001874/1-1073 DLSGNNISEL KTALPPLQLK YLYIN-YRMT SXXXXXXXXX XXXXXXXXXX bmy_11790T0/1-1011 DLSGNNISEL KTALPPLQLK YLYINSNRVT SMEPGYFDSL ANTLLVLKLN ENSBTAP00000002883/1-1119 DLSGNNISEL KTALPPLQLK YLYINSNRVT SMEPGYFDNL ASTLLVLKLN BACU008172/1-1119 DLSGNNISEL KTALPPLQLK YLYINSNRVT SMEPGYFDSL ANTLLVLKLN 201 250 ENSP00000326759/1-1119 RNRISAIPPK MFKLPQLQHL ELNRNKIKNV DGLTFQGLGA LKSLKMQRNG ENSTTRP00000001874/1-1073 XXXXXXXXXX XXXXXXXXXX ELNRNKIKNV DGLTFQGLGA LKSLKMQRNG bmy_11790T0/1-1011 RNRISALPPK MFRLPQLQHL ELNRNKIKNV DGLTFQGLGA LKSLKMQRNG ENSBTAP00000002883/1-1119 RNRISALPPK MFKLPQLQHL ELNRNKIKNI DGLTFQGLGA LKSLKMQRNG BACU008172/1-1119 RNRISALPPK MFRLPQLQHL ELNRNKIKNV DGLTFQGLGA LKSLKMQRNG 251 300 ENSP00000326759/1-1119 VTKLMDGAFW GLSNMEILQL DHNNLTEITK GWLYGLLMLQ ELHLSQNAIN ENSTTRP00000001874/1-1073 VTKLMDGAFW GLSNMEILQL DHNNLTEITK GWLYGLLMLQ ELHLSQNAIT bmy_11790T0/1-1011 VTKLMDGAFW GLSNMEILQL DHNNLTEITK GWLYGLLMLQ ELHLSQNAIN ENSBTAP00000002883/1-1119 VTRLMDGAFW GLSNMEILQL DHNNLTEITK GWLYGLLMLQ ELHLSQNAIS BACU008172/1-1119 VTKLMDGAFW GLSNMEILQL DHNNLTEITK GWLYGLLMLQ ELHLSQNAIN 301 350 ENSP00000326759/1-1119 RISPDAWEFC QKLSELDLTF NHLSRLDDSS FLGLSLLNTL HIGNNRVSYI ENSTTRP00000001874/1-1073 RISPDAWEFC QKLSELDLTF NHLSRLDDSS FLGLSLLNTL HIGNNKVSYI bmy_11790T0/1-1011 RISPDAWEFC QKLSELDLTF NHLSRLDDSS FLGLSLLNTL HIGNNKVSYI ENSBTAP00000002883/1-1119 RISPDAWEFC QKLSELDLTY NHLSRLDDSS FLGLSLLNTL HIGNNRVNYI BACU008172/1-1119 RISPDAWEFC QKLSELDLTF NHLSRLDDSS FLGLSLLNTL HIGNNKVSYI 351 400 ENSP00000326759/1-1119 ADCAFRGLSS LKTLDLKNNE ISWTIEDMNG AFSGLDKLRR LILQGNRIRS ENSTTRP00000001874/1-1073 ADCAFRGLSS LKTLDLKNNE ISWTIEDMNG AFSGLDKLRR LILQGNRIRS bmy_11790T0/1-1011 ADCAFRGLSS LKTLDLKNNE ISWTIEDMNG AFSGLDKLRR LILQGNRIRS ENSBTAP00000002883/1-1119 ADCAFRGLSS LKTLDLKNNE ISWTIEDMNG AFSGLDKLKR LILQGNRIRS BACU008172/1-1119 ADCAFRGLSS LKTLDLKNNE ISWTIEDMNG AFSGLDKLRR LILQGNRIRS 401 450 ENSP00000326759/1-1119 ITKKAFTGLD ALEHLDLSDN AIMSLQGNAF SQMKKLQQLH LNTSSLLCDC ENSTTRP00000001874/1-1073 ITKKAFTGLD ALEHLDLSDN AIMSLQGNAF SQMKKLQQLH LNTSSLLCDC bmy_11790T0/1-1011 ITKKAFTGLD ALEHLDLSDN AIMSLQGNAF SQMKKLQQLH LNTSSLLCDC ENSBTAP00000002883/1-1119 ITKKAFTGLD ALEHLDLSDN AIMSLQGNAF SQMKKLQQLH LNTSSLLCDC BACU008172/1-1119 ITKKAFTGLD ALEHLDLSDN AIMSLQGNAF SQMKKLQQLH LNTSSLLCDC 451 500 ENSP00000326759/1-1119 QLKWLPQWVA ENNFQSFVNA SCAHPQLLKG RSIFAVSPDG FVCDDFPKPQ ENSTTRP00000001874/1-1073 QLKWLPQWVA ENNFQSFVNA SCAHPQLLKG RSIFAVSPDG FVCDDFPKPQ bmy_11790T0/1-1011 QLKWLPQWVX ENNFQSFVNA NCAHPQLLKG RSIFAVSPDG FVCDDFPKPQ ENSBTAP00000002883/1-1119 QLKWLPQWVA ENNFQSFVNA SCAHPQLLKG RSIFAVSPDG FVCDDFPKPQ BACU008172/1-1119 QLKWLPQWVA ENNFQSFVNA NCAHPQLLKG RSIFAVSPDG FVCDDFPKPQ 501 550 ENSP00000326759/1-1119 ITVQPETQSA IKGSNLSFIC SAASSSDSPM TFAWKKDNEL LHDAEMENYA ENSTTRP00000001874/1-1073 ITVQPETQSA IKGSNLSFIC SAASSSDSPM TFAWKKDNEL LHDAEMENYA bmy_11790T0/1-1011 ITVQPETQSA IKGSNLSFVC SAASSSDSPM TFAWKKDNEL LHDAEMENYA ENSBTAP00000002883/1-1119 ITVQPETQSA IKGSNLSFIC SAASSSDSPM TFAWKKDNEL LHDAEMENYA BACU008172/1-1119 ITVQPETQSA IKGSNLSFVC SAASSSDSPM TFAWKKDNEL LHDAEMENYA 551 600 ENSP00000326759/1-1119 HLRAQGGEVM EYTTILRLRE VEFASEGKYQ CVISNHFGSS YSVKAKLTVN ENSTTRP00000001874/1-1073 HLRAQGGEVM EYTTILRLRS VEFTSEGRYQ CVISNHFGSS YSVKAKLTVN bmy_11790T0/1-1011 HLRAQGGEVM EYTTILRLRS VEFTSEGKYQ CVISNHFGSS YSVKAKLT-- ENSBTAP00000002883/1-1119 HLRAQGGEVM EYTTILRLRN VEFTSEGKYQ CVISNHFGSS YSVKAKLTVN BACU008172/1-1119 HLRAQGGEVM EYTTILRLRS VEFTSEGKYQ CVISNHFGSS YSVKAKLTVN 601 650 ENSP00000326759/1-1119 MLPSFTKTPM DLTIRAGAMA RLECAAVGHP APQIAWQKDG GTDFPAARER ENSTTRP00000001874/1-1073 MLPSFTKTPM DLTIRAGAMA RLECAALGHP APQIAWQKDG GTDFPAARER bmy_11790T0/1-1011 ---------- ---------- ---------- ---IAWQKDG GTDFPAARER ENSBTAP00000002883/1-1119 MLPSFTKTPM DLTIRAGAMA RLECAALGHP APQIAWQKDG GTDFPAARER BACU008172/1-1119 MLPSFTKTPM DLTIRAGAMA RLECAALGHP APQIAWQKDG GTDFPAARER 651 700 ENSP00000326759/1-1119 RMHVMPEDDV FFIVDVKIED IGVYSCTAQN SAGSISANAT LTVLETPSFL ENSTTRP00000001874/1-1073 RMHVMPEDDV FFIVDVKIED IGVYSCTAQN SAGSISANAT LTVLETPSFL bmy_11790T0/1-1011 RMHVMPEDDV FFIVDVKIED IGVYSCTAQN SAGSISANAT LTVLETPSFL ENSBTAP00000002883/1-1119 RMHVMPEDDV FFIVDVKIED IGVYSCTAQN SAGSISANAT LTVLETPSFL BACU008172/1-1119 RMHVMPEDDV FFIVDVKIED IGVYSCTAQN SAGSISANAT LTVLETPSFL 701 750 ENSP00000326759/1-1119 RPLLDRTVTK GETAVLQCIA GGSPPPKLNW TKDDSPLVVT ERHFFAAGNQ ENSTTRP00000001874/1-1073 RPLLDRTVTK GETAVLQCIA GGSPPPRLNW TKDDSPLVVT ERHFFAAGNQ bmy_11790T0/1-1011 RPLLDRTVTK GETAVLQCIA GGSPPPRLNW TKDDSPLVVT ERHFFAAGNQ ENSBTAP00000002883/1-1119 RPLLDRTVTK GETAVLQCIA GGSPPPRLNW TKDDSPLVVT ERHFFAAGNQ BACU008172/1-1119 RPLLDRTVTK GETAVLQCIA GGSPPPRLNW TKDDSPLVVT ERHFFAAGNQ 751 800 ENSP00000326759/1-1119 LLIIVDSDVS DAGKYTCEMS NTLGTERGNV RLSVIPTPTC DSPQMTAPSL ENSTTRP00000001874/1-1073 LLIIVDSDVR DAGKYTCEMS NTLGTERGHV RLSVIPTPTC DSPQMTASSL bmy_11790T0/1-1011 LLIIVDSDVR DAGKYTCEMS NTLGTERGHV RLSVIPTPTC DSPQLTASSL ENSBTAP00000002883/1-1119 LLIIVDSDIS DAGKYTCEMS NTLGTERGHV RLSVIPTPTC DSPQMTASSL BACU008172/1-1119 LLIIVDSDVR DAGKYTCEMS NTLGTERGHV RLSVIPTPTC DSPQLTASSL 801 850 ENSP00000326759/1-1119 DDDGWATVGV VIIAVVCCVV GTSLVWVVII YHTRRRNEDC SITNTDETNL ENSTTRP00000001874/1-1073 DDDGWATVGI VIIAVVCCVV GTSLVWVVII YHTRRRNEDC SITNTDETNL bmy_11790T0/1-1011 DDDGWATMGI VIIAVVCCVV GTSLVWVVII YHTRRRNEDC SITNTDETNL ENSBTAP00000002883/1-1119 DDDGWATVGI VIIAVVCCVV GTSLVWVVII YHTRRRNEDC SITNTDETNL BACU008172/1-1119 DDDGWATVGI VIIAVVCCVV GTSLVWVVII YHTRRRNEDC SITNTDETNL 851 900 ENSP00000326759/1-1119 PADIPSYLSS QGTLADRQDG YVSSESGSHH QFVTSSGAGF FLPQHDSSGT ENSTTRP00000001874/1-1073 PADTPSYLSS QGTLADRQDG YVSSESGSHH QFVTSSGGGF FLPQHGSNGT bmy_11790T0/1-1011 PADTPSYLSS QGTLADRQDG YVSSESGSHH QFVTSSGGGF FLPQHGSNGT ENSBTAP00000002883/1-1119 PADIPSYLSS QGTLADRQDG YISSENGSHH QFVTSSGGGF FLPQHDSNGT BACU008172/1-1119 PADTPSYLSS QGTLADRQDG YVSSESGSHH QFVTSSGGGF FLPQHGSNGT 901 950 ENSP00000326759/1-1119 CHIDNSSEAD VEAATDLFLC PFLGSTGPMY LKGNVYGSDP FETYHTGCSP ENSTTRP00000001874/1-1073 CHIDNSSEAD VEAATDPFLC PFLGPSGPVY LKGSVYGSDP FEAYHTGCGP bmy_11790T0/1-1011 CHIDNSSEAD VEAATDPFLC PFLGPSGPVY LKGSVYGSDP FEAYHTGCGP ENSBTAP00000002883/1-1119 CHIDNSSEAD VEAATDPFLC PFLGPSGPVY LKGSVYGSDP FEAYHTGCGP BACU008172/1-1119 CHIDNSSEAD VEAATDPFLC PFLGPSGPVY LKGSVYGSDP FEAYHTGCGP 951 1000 ENSP00000326759/1-1119 DPRTVLMDHY EPSYIKKKEC YPCSHPSEES CERSFSNISW PSHVRKLLNT ENSTTRP00000001874/1-1073 DPRTALMEHF ESSYIKKKEG YPCPHPSEES CEQSVSDTGW PSHVKKLLSS bmy_11790T0/1-1011 DPRTALMEHY EPSYIKKKEG YPCPHPSEES CEQSVSDTGW PSHVRKLLSS ENSBTAP00000002883/1-1119 DLRSALMDHY EPSYIKKKEC YPCPHPSEES CEQSVSDTGW PSHAKKLLSS BACU008172/1-1119 DPRTALMEHY EPSYIKKKEG YPCPHPSEES CEQSVSDTGW PSHVRKLLSS 1001 1050 ENSP00000326759/1-1119 SYSHNEGPGM KNLCLNKSSL DFSANPEPAS VASSNSFMGT FGKALRRPHL ENSTTRP00000001874/1-1073 SYSQHEGPGM NNLCLNKSSA DFSPSPEPAS VTLSKSFMGT FGKPLRRPHL bmy_11790T0/1-1011 SYSQHEGPGM NNLRLNKSSA DFSPSPEPAS VTLSKSFMGT FGKPLRRPHL ENSBTAP00000002883/1-1119 SYSQHEGPGM NNLCLNKSSA DFSPSPEPPS VTLSNSFMGT FGKPLRRPHL BACU008172/1-1119 SYSQHEGPGM NNLCLNKSLA DFSPSPEPAS VTLSKSFMGT FGKPLRRPHL 1051 1100 ENSP00000326759/1-1119 DAYSSFGQPS DCQPRAFYLK AHSSPDLDSG SEEDGKERTD FQEENHICTF ENSTTRP00000001874/1-1073 DAFSSSGQSS DCQPRTFHLK ARSSPNLDCE SEEDGKERTD FQQENHACTY bmy_11790T0/1-1011 DAFSSSGQSS DCQPRTFHLK ARSSPNLDCE SEEDGKERTD FQQENHTCTY ENSBTAP00000002883/1-1119 DAFSSSGQSS DCQPRAFHLK ARSSPNLDYE SEEDGKERTD FQQENHTCTH BACU008172/1-1119 DAFSSSGQSS DCQPRTFHLK ACSSPNLDCE SEEDGKERTD FQRENHTCTY 1101 1150 ENSP00000326759/1-1119 KQTLENYRTP NFQSYDLDT ENSTTRP00000001874/1-1073 KQTLENHRTS NFQSYDLDT bmy_11790T0/1-1011 KQTLENHRTS NFQSYDLDT ENSBTAP00000002883/1-1119 KQTLESHRTS NFQSFDLDT BACU008172/1-1119 KQTLENHRTS NFQSYDLDT