KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:19:25 2014 Check: 00 .. Name: ENSBTAP00000002891/1-464 Len: 657 Check: 4955 Weight: 1.00 Name: BACU010796/1-652 Len: 657 Check: 6807 Weight: 1.00 Name: bmy_03569T0/1-266 Len: 657 Check: 691 Weight: 1.00 Name: ENSTTRP00000004706/1-419 Len: 657 Check: 5246 Weight: 1.00 // 1 50 ENSBTAP00000002891/1-464 MVASSQALLR HFGFCRWGPT PWVQLAGSLK LRTGNPVSWT TVRLVTTVTL BACU010796/1-652 MVVSFPALLR PFRLCRWDPT PWARLAGPTK LRTGDPNSWA PTRMAATVTL bmy_03569T0/1-266 ---------- ---------- ---------- ---------- ---TAKS--- ENSTTRP00000004706/1-419 ---------- ---------- ---------- ---------- ---MAVTVTL 51 100 ENSBTAP00000002891/1-464 EPAGRCRWDE PVRITVRGLA PGQPVTLRAS LRDEKGALFR AHARYCADAA BACU010796/1-652 EPAVRCRWDE SVRIGVRGLA PGQPVTLRAS LRDEKDALFR AHARYCADAH bmy_03569T0/1-266 ---------- ---------- ---------- --------FK YSLVLC---- ENSTTRP00000004706/1-419 EPAGRCRWDE PVRIAVRGLA PGQPVTLRAS LRDEKDALFR AHARYCADAH 101 150 ENSBTAP00000002891/1-464 GLLDLERAPA LGGSFTGLEP MGLFWAMEPE KPLLRLVKRD VQTPFAVELE BACU010796/1-652 GQLDLERAPA LGGSFAGLEP MGLLWALEPE KPFWRFLKRD VQTPFAVELE bmy_03569T0/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004706/1-419 GQLDLERAPA LGGSFTGLEP MGLLWALEPE KPLLRLVKRD VQTPFAVELE 151 200 ENSBTAP00000002891/1-464 VLDNHEPRVG RLLGRVVHER DFLAPGVRRE PVRAGRVRAT LFLPPEPGPF BACU010796/1-652 VLDGHDPEAG GLLSRAVQER DFLAPGVRRE PVRSGRVRAT LFLPPGPAPF bmy_03569T0/1-266 ---------- ---------- ---------- ---------- FVSSQGPPPF ENSTTRP00000004706/1-419 VLHGHDPEAG GLLGRAVHER DFLAPGVRRE PVRVGRVRAT LFLPPGPAPF 201 250 ENSBTAP00000002891/1-464 PGIVDILGAG GGLLEYRASL LAGKGFAVMA LAYYNYEDLP KGLENLHLEY BACU010796/1-652 PGIVDISGTG RGLPEYRASL LAGKGFAVMA LAYYNYEDLP KSIENLHLEY bmy_03569T0/1-266 PGIVDISGTG RGLPEYRASL LAGKGFAVMA LAYYNYEDLP KSIENLHLEY ENSTTRP00000004706/1-419 PGIVDISGTG RGLPEYRASL LAGKGFAVMA LAYYNYEDLP KSIENLHLEY 251 300 ENSBTAP00000002891/1-464 FEEAVNYLLN HPQVKGPGVG LLGISKGGEL CLSMASFLKG ISAAVIINGS BACU010796/1-652 FEEAMNYLLN HPQVKGPGVG LLGISKGGEL CLSMASFLKG ITAAVIINGS bmy_03569T0/1-266 FEEAMNYLLN HPQ------- ---------- ---MASFLKG ITAAVIINGS ENSTTRP00000004706/1-419 FEEAMNYLLN HPQVKGPGVG LLGISKGGEL CLSMASFLKG ITAAVIINGS 301 350 ENSBTAP00000002891/1-464 VAYVGGNLHY KGEIMPPVGF NQNRIKMTKD GFVDIVEVLN SPLEGPDQKS BACU010796/1-652 VASVGGTLHY KGETLPPVGV SRSRFKVTKD GLADILDVLN SPLEGPDQKS bmy_03569T0/1-266 VASVGGTLHY KGETLPPVGV SRSRFKVTKD GLADILDVLN SPLEGPDQKS ENSTTRP00000004706/1-419 VASVGG-LHY KGETLPPLGV SRSRLKVTKD GVTDILDV-N SPLEGHDQKS 351 400 ENSBTAP00000002891/1-464 FIPVERAECP FLFLVGQDDH NWKSEFYANE ASK------- ---------- BACU010796/1-652 FIPVERAECP FLFLVGQDDH NWKSEFYANE ASKRLQAHRP GPFPGIIDIF bmy_03569T0/1-266 FIPVERAECA FLFLVGQDDH NWKSEFYANE ASK------- ---------- ENSTTRP00000004706/1-419 FIPVERAECA FLFLVGQDDH NWKSEFYANE ASK------- ---------- 401 450 ENSBTAP00000002891/1-464 ---------- ---------- ---------- ---------- ---------- BACU010796/1-652 GVGGALLEYR ASLLAGHGFA TLALAYCDFE DLPKKFDTIH LDYFEEALCY bmy_03569T0/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004706/1-419 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000002891/1-464 ---------- ---------- ---------- ---------- ---------- BACU010796/1-652 MLQHTQVKGP GIGLLGISLG ADICLSMASF LKNISATVSI NGSGFNGNKA bmy_03569T0/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004706/1-419 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000002891/1-464 ---------- ---------- ---------- ---------- ---------- BACU010796/1-652 IYYKENSIPP LGHDLRRMKV AFSGLLDIVD IRNDIVGGCE NPCMIPIEKA bmy_03569T0/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004706/1-419 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000002891/1-464 ---------- ---------- ------RLQA HGKAKPQVIC YPGTGHYIEP BACU010796/1-652 QGPILFIVGQ DDHNWRSELY AQIASERLQA HGKEKPQIIS YPGTGHYIEP bmy_03569T0/1-266 ---------- ---------- ------RLQA HSKAKPQIIC YPGAGHYIEP ENSTTRP00000004706/1-419 ---------- ---------- ------RLQA HSKAKPQIIC YPGAGHYIEP 601 650 ENSBTAP00000002891/1-464 PYFPLCPASL HTIVGAPVIW GGEPRAHARA QVDAWQQLQT FFHKHLGGEK BACU010796/1-652 PYFPMCPASL HKLLDKPVIW GGEPRAHSKA QVDAWKQILT FFTKHLGA-- bmy_03569T0/1-266 PYFPMCRASL HTLVGSPVIW GGEPRAHARA QVDAWQQLQT FFHKHLGGEK ENSTTRP00000004706/1-419 PYFPMCRASL HTLVGSPVIW GGEPRAHARA QVDAWQQLQT FFHKHLGGEK 651 700 ENSBTAP00000002891/1-464 GRIPAKL BACU010796/1-652 --CPKL- bmy_03569T0/1-266 GTIPGML ENSTTRP00000004706/1-419 GPIPGML