KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:27 2014 Check: 00 .. Name: ENSP00000385026/1-529 Len: 530 Check: 992 Weight: 1.00 Name: ENSBTAP00000002910/1-506 Len: 530 Check: 3485 Weight: 1.00 Name: bmy_05089T0/1-329 Len: 530 Check: 2961 Weight: 1.00 Name: ENSTTRP00000002227/1-525 Len: 530 Check: 235 Weight: 1.00 Name: BACU015283/1-504 Len: 530 Check: 5477 Weight: 1.00 // 1 50 ENSP00000385026/1-529 MGPSCPVFLS FTKLSLWWLL LTPAGGEEAK RPPPRAPGDP LSSPSPTALP ENSBTAP00000002910/1-506 MGPSRLVLPF KTKLGLWWLL LIPA------ ---------- ------VSSK bmy_05089T0/1-329 MGPARPALPS TTKLGLWWLF LIPA------ ---------- ------ASVQ ENSTTRP00000002227/1-525 MGPSRPALPS TTKLGLWWLL LIPA-GEGAK RPAPRTPGDP LSPPPTASVE BACU015283/1-504 MGPARPALPS TTKLGLWWLF LIPA------ ---------- ------ASVQ 51 100 ENSP00000385026/1-529 QGGSHTETED RLFKHLFRGY NRWARPVPNT SDVVIVRFGL SIAQLIDVDE ENSBTAP00000002910/1-506 R-APHTQAED RLFKHLFRGY NRWARPVPNT SDVVIVRFGL SIAQLIDVDE bmy_05089T0/1-329 Q-ASPTQAED RLFQHLFRGY NRWTRPVPNT SDVVIVHFGL SIAQLIDVDE ENSTTRP00000002227/1-525 Q-ASPTQAED RLFQHLFRGY NRWARPVPNT SDVVIVHFGL SIAQLIDVDE BACU015283/1-504 Q-ASPTQAED RLFQHLFRGY NRWARPVPNT SDVVIVHFGL SIAQLIDVDE 101 150 ENSP00000385026/1-529 KNQMMTTNVW LKQEWSDYKL RWNPTDFGNI TSLRVPSEMI WIPDIVLYNN ENSBTAP00000002910/1-506 KNQMMTTNVW LKQEWSDYKL RWNPVDFGNI TSLRVPSEMI WIPDIVLYNN bmy_05089T0/1-329 KNQMMTTKVW LKQEWNDYKL RWNPADFGNI TSLRVPSEMI WIPDIVLYNN ENSTTRP00000002227/1-525 KNQMMTTNVW LKQEWNDYKL RWNPADFGNI TSLGVPSEMI WIPDIVLYNN BACU015283/1-504 KNQMMTTKVW LKQEWNDYKL RWNPADFGNI TSLRVPSEMI WIPDIVLYNN 151 200 ENSP00000385026/1-529 ADGEFAVTHM TKAHLFSTGT VHWVPPAIYK SSCSIDVTFF PFDQQNCKMK ENSBTAP00000002910/1-506 ADGEFVVTHM TKAHLFSSGL LHWAPPAIYK SSCSIDVTFF PFDQQNCKMK bmy_05089T0/1-329 ADGEFVVTHM TKAHLFSSGT VHWVPPAIYK SSCSMDVTFF PFDQQNCKMK ENSTTRP00000002227/1-525 ADGEFVVTHM TKAHLFSSGT VHWVPPAIYK SSCSIDVTFF PFDQQNCKMK BACU015283/1-504 ADGEFVVTHM TKAHLFSSGT VHWVPPAIYK SSCSIDVTFF PFDQQNCKMK 201 250 ENSP00000385026/1-529 FGSWTYDKAK IDLEQMEQTV DLKDYWESGE WAIVNATGTY NSKKYDCCAE ENSBTAP00000002910/1-506 FGSWSYDKAK IDLVQMEQTV DLKDYWESGE WAIVNATGTY NTKKYDCCAE bmy_05089T0/1-329 FGSWSYDKAK IDLVQTEQTV DLKDYWESGE WAIVNATGTY NTKKYDCCAE ENSTTRP00000002227/1-525 FGSWSYDKAK IDLVPMQQTV DLKDYWESGE WAIVNATGTY NTKKYDCCAE BACU015283/1-504 FGSWSYDKAK IDLVQMEQTV DLKDYWESGE WAIVNATGTY NTKKYDCCAE 251 300 ENSP00000385026/1-529 IYPDVTYAFV IRRLPLFYTI NLIIPCLLIS CLTVLVFYLP SDCGEKITLC ENSBTAP00000002910/1-506 VYADVTYYFV IRRLPLFYTI NLIIPCLLIS CLTVLVFYLP SDCGEKITLC bmy_05089T0/1-329 IYPDVTYYFV IRRLPLFYTI NLIIPCLLIS CLT------- ---------- ENSTTRP00000002227/1-525 IYPDVTYYFV IRRLPLFYTI NLITPCLLIS CLTVLVFHLP SECGEKITLC BACU015283/1-504 IYPDVTYYFV IRRLPLFYTI NLIIPCLLIS CLTVLVFYLP SDCGEKITLC 301 350 ENSP00000385026/1-529 ISVLLSLTVF LLLITEIIPS TSLVIPLIGE YLLFTMIFVT LSIVITVFVL ENSBTAP00000002910/1-506 ISVLLSLTVF LLLITEIIPS TSLVIPLISE YLLFTMIFVT LSIVITVFVL bmy_05089T0/1-329 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002227/1-525 ISVLLSLTVF MLLITEIIPS TSLVIPLISE YLLFTMIFVT LSIVITVFVL BACU015283/1-504 ISVLLSLTVF LLLITEIIPS TSLVIPLISE YLLFTMIFVT LSIVITVFVL 351 400 ENSP00000385026/1-529 NVHHRSPSTH TMPHWVRGAL LGCVPRWLLM NRPPPPVELC HPLRLKLSPS ENSBTAP00000002910/1-506 NVHHRSASTH NMPHWVRVAF LGCVSRWLLI SRPLPPLELR DTPDLKPCPS bmy_05089T0/1-329 ---------- ---------- ---------- ---------- -------CHS ENSTTRP00000002227/1-525 NVHHRSASTH NMPHWVRVAF LGCVSRWLLI SRPLPPLELR DPPDLKLCPA BACU015283/1-504 NVHHRSASTH NMPHWVRVVF LGCVSRWLLI SRPLPPLELR DPPDQKLCPS 401 450 ENSP00000385026/1-529 YHWLESNVDA EER-EVVVEE EDRWACAGHV APSVGTLCSH GHLHSGASGP ENSBTAP00000002910/1-506 YHWLETNVDV EEREEEEEEE EGRWVCVGPS SPSVGV-YTR GSLHPVASGP bmy_05089T0/1-329 YR-------- ---------- GCAW--EGHL -PF------- ---------P ENSTTRP00000002227/1-525 YRWLETNVDA EGM---DEEK EGRWARAGHS SPFTGVPYSH GGLRPGASGP BACU015283/1-504 YRWLETNVDA EER---EEEE EGRWACAGHS SPFTGVPYSH GGWHPGASGP 451 500 ENSP00000385026/1-529 KAEALLQEGE LLLSPHMQKA LEGVHYIADH LRSEDADSSV KEDWKYVAMV ENSBTAP00000002910/1-506 RAEAQVPEGG LLLSPRVQKA LEGVHYIADH LRAEDADSSV KEDWRYVAMV bmy_05089T0/1-329 KASVTVRPSP L--------- ---------- --------QV KEDWRYVAMV ENSTTRP00000002227/1-525 KAEAQLPEGG PLLSPRIQKA LEGVCYIADH LRAEDADSSV KEDWRYVAMV BACU015283/1-504 KAEAQLPEGG LLLSPRIQKA LEGVRYIADH LRAEDADSSV KEDWRYVAMV 501 550 ENSP00000385026/1-529 IDRIFLWLFI IVCFLGTIGL FLPPFLAGMI ENSBTAP00000002910/1-506 IDRIFLWLFI LVCFLGTVGL FLPPFLAGMI bmy_05089T0/1-329 IDRIFFWLFI LVCFLGTIGL FLPPFLAGMI ENSTTRP00000002227/1-525 IDRIFLWLFI LVCFLGTVGL FLPPSLAGMI BACU015283/1-504 IDRIFLWLFI LVCFLGTVGL FLPPFLAGMI