KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:19:27 2014 Check: 00 .. Name: ENSP00000431759/1-1547 Len: 1553 Check: 6295 Weight: 1.00 Name: ENSBTAP00000002911/1-806 Len: 1553 Check: 4473 Weight: 1.00 Name: ENSTTRP00000000257/1-686 Len: 1553 Check: 8141 Weight: 1.00 Name: bmy_10951T0/1-603 Len: 1553 Check: 8392 Weight: 1.00 // 1 50 ENSP00000431759/1-1547 FLLTAKKRKA NLPSDAEEFS TFINSIMSDE NMSKTQTVYD SDSQSGSSAK ENSBTAP00000002911/1-806 ---------- ---MAAQGTC SVSSPNVSPT SVSPPTP--- PPPSTGISKS ENSTTRP00000000257/1-686 ---------- ---MAAQGTC STSPSNVSPT SVSPPGPPPT PPPTSTAISK bmy_10951T0/1-603 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000431759/1-1547 EKDRGANLCV MDHFMKIFLY CRRAMVLAHR GGYWTLLQNC CRALWNFTQE ENSBTAP00000002911/1-806 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000257/1-686 ---------- ---------- ---------- ---------- ---------- bmy_10951T0/1-603 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000431759/1-1547 LQILLKQAVD LDKTFPISQD GFLCTSVLPF YLGAELLIDM LIQLQNTSSI ENSBTAP00000002911/1-806 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000257/1-686 ---------- ---------- ---------- ---------- ---------- bmy_10951T0/1-603 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000431759/1-1547 KPIEDKGEFS VPSCYGNIKN DNGGSSLTFE HPLDDVNVVD LKWIHDFVLK ENSBTAP00000002911/1-806 TLVDSKASSL SPQSRSAGHE D--------- ---------- ---------- ENSTTRP00000000257/1-686 FPVESKASSL SPQPRSTCRE D--------- ---------- ---------- bmy_10951T0/1-603 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000431759/1-1547 SLEVLYQVEK WETLVSLAIQ FNTVSHERYT EQVTPLLVYA QRQLLLRIQK ENSBTAP00000002911/1-806 ---------- ---------- ---------- ---------- ----LLPLAV ENSTTRP00000000257/1-686 ---------- ---------- ---------- ---------- ----LLPLAV bmy_10951T0/1-603 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000431759/1-1547 FKGPDITQQP CARYEAEYGE KITCRNFIGK QLKINSSTIE ATSNCTDLLK ENSBTAP00000002911/1-806 FYGPLDAKNP ---------- ---------- ---------- ---------- ENSTTRP00000000257/1-686 FYGPLDAKNP ---------- ---------- ---------- ---------- bmy_10951T0/1-603 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000431759/1-1547 MLISSEYSRA KALVCVPVDV TDTLRCFRET LEKSKYHNRS IRHSRKLLSL ENSBTAP00000002911/1-806 ---------- -LLASCEKEI QELLDFMKRK KALATTEEQK YEFHRLCATS ENSTTRP00000000257/1-686 ---------- -LLASCEKEI QELLGFMKRK TALATTEEQE HEFHRRXXXX bmy_10951T0/1-603 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000431759/1-1547 FLAQTQDVLQ ASNQRSLKVQ ALHSLGSLLI FAEKKRAAFK CWCQALDDIF ENSBTAP00000002911/1-806 LFNIWTKYAP RLPAAYYNEK LLKVGDSLCE MKEYKLALLQ CYGRYLQEFS ENSTTRP00000000257/1-686 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXEYKLALLQ CYGRYLQQFS bmy_10951T0/1-603 ---------- ---------- -------LFL FQEYKLALLQ CYGRYLQQFS 401 450 ENSP00000431759/1-1547 RKPDVLHTWK EFGPSLTNVT NSHSPPGFKD YSEEFLSRVG IWGCLQGAVI ENSBTAP00000002911/1-806 ------ISFD ENKADVNQFK TVFFPKGFGD KTAAH----- TFHALNGKNI ENSTTRP00000000257/1-686 ------INFD ENKADVNQFK SVFFPKGFED KSAAH----- TFHALSGRNI bmy_10951T0/1-603 ------INFD ENKADVNQFK SVFFPKGFED KSAAH----- TFHALSGRSI 451 500 ENSP00000431759/1-1547 SAKIAQFIKS LNVEKKTDCC ILSALLFQGL LRTTLPHPKA ERCYAQYEIT ENSBTAP00000002911/1-806 CNYQLVCDSD VNLQNKESVT HCLQILSSFR LIMQVALPQE HLCWIIFNGT ENSTTRP00000000257/1-686 CNYQLVCDSD MNLQNKESVA RCLXXXXXXX XXXXXXXXXX XXXXXXXXXT bmy_10951T0/1-603 CNYQLVCDSD MNLQNKESVA RCLHILSSLR LIMQVALPQE QLCWIIFNGT 501 550 ENSP00000431759/1-1547 QLLPGIELFS DRYRADICSV IASLYYIIRE LHFVRQNLIV LPLLALYQYF ENSBTAP00000002911/1-806 ---------- ---------- -IYIYTICRK LMIRGHSSKA LEYL-----L ENSTTRP00000000257/1-686 ---------- ---------- -IYIYTICRK LMIIGHSSKA LEYL-----L bmy_10951T0/1-603 ---------- ---------- -IYIYTICRK LMIIGHSSK- ---------- 551 600 ENSP00000431759/1-1547 VSGICQDITR NLEARILKIE VLIDLRFFSE AFYEISQIFY GKNMPCPIPA ENSBTAP00000002911/1-806 WASICMESSV PLLSIRYLTW RATLYTAVCQ CYYDCQAGVH GEAF------ ENSTTRP00000000257/1-686 WASVCMESSV PLLSIRYLTW RATLYTAVCQ CYYDCQAGIH GEAF------ bmy_10951T0/1-603 ---------- ---------- ---------- ---------- --AF------ 601 650 ENSP00000431759/1-1547 GYKATGKMKI FQSFDSGKLL TSKENIQAID ELRNKGLPAV LVTIGQPHLL ENSBTAP00000002911/1-806 ---------- ---------- -ARRALAKID ELRQLEL--- ---------- ENSTTRP00000000257/1-686 ---------- ---------- -ARRALAKID ELRQLEL--- ---------- bmy_10951T0/1-603 ---------- ---------- -ARRALAKID ELRQLEL--- ---------- 651 700 ENSP00000431759/1-1547 NKFNFVKAYF FLSVAATINC VPENKFKTVI TNKSKPNLPN LEEIYSKDDG ENSBTAP00000002911/1-806 ---------- ---------- ---------- ---------- MSSSQPQEES ENSTTRP00000000257/1-686 ---------- ---------- ---------- ---------- MSSSQSQEES bmy_10951T0/1-603 ---------- ---------- ---------- ---------- MSSSQSQEES 701 750 ENSP00000431759/1-1547 SSFYNLTKLK DEITLSMLKS MLLMEAEDRL NFLLSEVEQK TLSQCSAGEL ENSBTAP00000002911/1-806 REYYR----- ---------- ---------- ---------- ---------- ENSTTRP00000000257/1-686 RGYYR----- ---------- ---------- ---------- ---------- bmy_10951T0/1-603 RGYYR----- ---------- ---------- ---------- ---------- 751 800 ENSP00000431759/1-1547 EIVVEARLQL AAVALQRHRA AYSAAIVFST LTLLQDSKLF EKKVVQDDTE ENSBTAP00000002911/1-806 ----EATIKM AVMIFKR--- ---------- -------GVF ESR------- ENSTTRP00000000257/1-686 ----EATIKM AVMIFKR--- ---------- -------GVF ESR------- bmy_10951T0/1-603 ----EATIKM AVMIFKR--- ---------- -------GVF ESR------- 801 850 ENSP00000431759/1-1547 NPVSPGTSVT ENKDDSEFLD PISLNAREYF NIHLWLRCRL ALVTAFVAQI ENSBTAP00000002911/1-806 ---------- -RKNKSFFRP KIRVNIKEAQ TMP-WPRTAT EKLL------ ENSTTRP00000000257/1-686 ---------- -RRNKSFFRP NIRANLREAQ TLP-WPRTVT EQLL------ bmy_10951T0/1-603 ---------- -RKNKSFFRP KIRVNLKEAQ TLP-WPRTVT ERLL------ 851 900 ENSP00000431759/1-1547 HGIGIVKEDD MTDCLSLINE VCMEAKSAGD TELQAEFLTQ AVILGLQEKH ENSBTAP00000002911/1-806 --------EE LFDSTASRFL AVLEALSDSN ---RRILQTG PVFTDEVEVR ENSTTRP00000000257/1-686 --------DE MFDSTASRFL AVLEALSDSN ---RRTLQTG PVVTDEVEVR bmy_10951T0/1-603 --------DE MFDSTASRFL AVLEALSDSN ---RRTLQTG PVVTDEVEVH 901 950 ENSP00000431759/1-1547 LKADIMTNLQ DIIHLLEGNE FI-----SPQ SRLTLARSLV LLDDLTKAEK ENSBTAP00000002911/1-806 ---DVVSEL- ----FMAGKE LLIMSNIGAD GILDFPKAHL LELIIKKKNL ENSTTRP00000000257/1-686 ---DVVSEL- ----FIAGKE LLIMSNTSAD GMLDFPKSSL LELIIRRKNV bmy_10951T0/1-603 ---DVVSEL- ----FIAGKE LL-------- ---------- ---------- 951 1000 ENSP00000431759/1-1547 FKESPSSKTG KLNLLTRAHS ILTEQMLAFG ETIEFRSSNT KYANPLQPLK ENSBTAP00000002911/1-806 ISVNAAVKFI KLAFMYEEWS LFES---AAG QLIDFLQRQD DPASKKAEKN ENSTTRP00000000257/1-686 ISVDAAVKFI KLAFTYEEWS LFES---AAG QLIDFLQRQD DPESKKAEKD bmy_10951T0/1-603 ---------- -ITFTYEEWS LFES---AAG QLIDFLQRQD DPESKKAEKD 1001 1050 ENSP00000431759/1-1547 NIYLPHVMLL AKIKMRIGHT VAKQVYYKNK RKDPSKWLPA LHLFDVALKL ENSBTAP00000002911/1-806 LILLVAIEPL INVKRNKGLI FPFDNY---- -KEGQVYVKK IAVHDTYVKS ENSTTRP00000000257/1-686 LILLLAIEPL INVKRNKGLI FPLENY---- -KGSQVNGKK IALHDTSVKT bmy_10951T0/1-603 LILLIAIEPL INVKRNKGLI FPLENF---- -KGGQVYVKK IALHDTSVKT 1051 1100 ENSP00000431759/1-1547 CRTTAVEEHE VEAEILFQKG KIERQILMEE KSPSFQLESL YEAIQLSLKN ENSBTAP00000002911/1-806 CGYS------ ---EDIFHLA ---------- -------TTL YSCVCDSPQN ENSTTRP00000000257/1-686 CGYS------ ---EDISHLA ---------- -------AAL YSCVCGSPQN bmy_10951T0/1-603 CAYS------ ---EDIFHLA ---------- -------ATL YSCVCGSPQN 1101 1150 ENSP00000431759/1-1547 DQNSGLIRDS YLEMALLYFH LKKPKIKISG SPLTLKPPLR RSSSVKETSA ENSBTAP00000002911/1-806 AQ-----PDK EIVVDMIMFL WQKCKLGM-- ---------Q RVTVSKNDYS ENSTTRP00000000257/1-686 AQ-----PDK EIVVDMIMFL WQKCKVGI-- ---------Q RVNVSGNDYA bmy_10951T0/1-603 AQ-----PDK EIVVDMIMFL WQKCKVGI-- ---------Q RVNVSRNDYA 1151 1200 ENSP00000431759/1-1547 NKFEMYSSLA WIAIRAAAQV SEAVLAINLL IGKKNTRMHK VNQVALPNIP ENSBTAP00000002911/1-806 KFTQKISTNK WL-------- ---------- ---------- ---------- ENSTTRP00000000257/1-686 KFTQKISTNK WV-------- ---------- ---------- ---------- bmy_10951T0/1-603 KFTQKISTNK WV-------- ---------- ---------- ---------- 1201 1250 ENSP00000431759/1-1547 EFAALDLLSS YTDYLLDNYQ VLFQTSCTFL YQNDDVCDSA DGRKKTQTKV ENSBTAP00000002911/1-806 ---------- ---YL----- ---------L WQINEI---- ---------- ENSTTRP00000000257/1-686 ---------- ---YL----- ---------L WQINEI---- ---------- bmy_10951T0/1-603 ---------- ---YL----- ---------L WQINEI---- ---------- 1251 1300 ENSP00000431759/1-1547 DITWILLLRY YIHLQRINNL SKLLASATPV SGISLPDDTL LTSLYNSELI ENSBTAP00000002911/1-806 ---------- -IHCYKMEDI DVVM-----V AEITLRLSEI LESLGNP--- ENSTTRP00000000257/1-686 ---------- -IHCYKMEDI DVVV-----V AEVALRLSEI LESLGNP--- bmy_10951T0/1-603 ---------- -IHCYKMEDI DVVV-----V AEVALRLSEI LESLGNP--- 1301 1350 ENSP00000431759/1-1547 LRQKEVHFFL KKFLQLYSSS CIDEFPKELL CQLENPPLSE KDLRESSAKL ENSBTAP00000002911/1-806 -RRK-----F KKFLDV---- ---------- ---------- -SLKRGTSEI ENSTTRP00000000257/1-686 -R-------- ---------- ---------- ---------- ---------- bmy_10951T0/1-603 -RRK-----F KKFLDI---- ---------- ---------- -PLRKGTSEL 1351 1400 ENSP00000431759/1-1547 YRDSSVQSIL SFKPVSGSSC VDITPIEMVT QASNKELCFQ WYIPPLDRPP ENSBTAP00000002911/1-806 FGGS------ -------KGS IDILPI---- ---------- -----IKKKP ENSTTRP00000000257/1-686 ---------- ---------- ---------- ---------- ---------- bmy_10951T0/1-603 LGAP------ -------KGS VETLPI---- ---------- -----LKKKP 1401 1450 ENSP00000431759/1-1547 KETEPMVLLL YAYNLKPLKI SDVRHSTYNS TCVGSLWIPL NRVIAIHEKL ENSBTAP00000002911/1-806 EEQLFMAYEL LDKAIDGINL NCMLTALPNG SSV------I DHCYATHNHY ENSTTRP00000000257/1-686 ---------- ---------- ---------- ---------- ---------- bmy_10951T0/1-603 EEQLFLAYEL LDKAIGGINL NCMLTALPNG SSV------V DHCYATHTHC 1451 1500 ENSP00000431759/1-1547 SNLAQIAELS LPAAPEITSN ENIYEVEVEE ESVDNEMEDM IIQCCSEIAS ENSBTAP00000002911/1-806 --------ID GDMCKPVTPN NFIMDLHLE- ---------- LIQAQHRIAV ENSTTRP00000000257/1-686 ---------- ---------- ---------- ---------- ---------- bmy_10951T0/1-603 --------ID ADTCKPVTRN SFIMDLHLE- ---------- LIEAQHRMAV 1501 1550 ENSP00000431759/1-1547 LFLNDKEPTP LSE-VPFDIS LPSIFNLERL FDLANGCILS GGSLFNWIVS ENSBTAP00000002911/1-806 VLLDQLQGSS HQ-------- ---------- ---------- ---------- ENSTTRP00000000257/1-686 ---------- ---------- ---------- ---------- ---------- bmy_10951T0/1-603 VLLDQLQGSS RQSRITCSES VLRQVQVQNQ FNL------- ---------- 1551 1600 ENSP00000431759/1-1547 IIP ENSBTAP00000002911/1-806 --- ENSTTRP00000000257/1-686 --- bmy_10951T0/1-603 ---