KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:19:29 2014 Check: 00 .. Name: ENSP00000335578/1-315 Len: 318 Check: 7469 Weight: 1.00 Name: ENSBTAP00000002930/1-236 Len: 318 Check: 5763 Weight: 1.00 Name: bmy_10099T0/1-141 Len: 318 Check: 6289 Weight: 1.00 Name: ENSTTRP00000001269/1-237 Len: 318 Check: 707 Weight: 1.00 // 1 50 ENSP00000335578/1-315 MRNRMAPENP QPDPFINRNY SNMKVIPPQD PASPSFTLLS KLECSGTVSA ENSBTAP00000002930/1-236 ---------- ---------- ---------- ---------- ---------- bmy_10099T0/1-141 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001269/1-237 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000335578/1-315 YCSLNLPGST DPPTSASRVA ATTAIRRRHK ERTSFTHQQY EELEALFSQT ENSBTAP00000002930/1-236 ---------- -------SIS CSTAKWKKSH ERTSFTHTQY KELEALFSCN bmy_10099T0/1-141 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001269/1-237 ---------- ---------- ----KWKKPH ERTSFTHQQH EELEALFSCN 101 150 ENSP00000335578/1-315 MFPDRNLQEK LALRLDLPES TVKVWFRNRR FKLKKQ---Q QQQSAKQRNQ ENSBTAP00000002930/1-236 MFPDKNLQRE LALKLNLPES TVKIWFRNRR FKMKKQQREQ EQQSLKPPSQ bmy_10099T0/1-141 ---------- ---------- ---IWFRNRR FKKRKQQWQQ EQQSLKPPNQ ENSTTRP00000001269/1-237 MFPDKNLQRE LALKLNLPAS PIKIWFRNRQ FKKRKQQWQQ EQQSLKPPNQ 151 200 ENSP00000335578/1-315 ILPSKKNVPT SPRTSPSPYA FSPVISDFYS SLPSQPLDPS NWAWNSTFTE ENSBTAP00000002930/1-236 VLPA-KDVPT ---VSTSPHS FLLAISDSYN SLSPQPLDTF PWAGDSMIME bmy_10099T0/1-141 VLPA-KNVPT ---ASTSPHS LLPAVSDSYS SHSPQPLDPF HWAGDSIITE ENSTTRP00000001269/1-237 VLPA-KNVPT ---ASTSPHS FLPAVSDSYS SHSPQPLDPF HWARDSIITE 201 250 ENSP00000335578/1-315 SSTSDFQMQD TQWERLVASV PALYSDAYDI FQIIELYNLP DENEISSSSF ENSBTAP00000002930/1-236 IPTSDVQTQD PQLERLVASV PALYSDAFDI TQIMELYSVP DEDDITNSSF bmy_10099T0/1-141 IATSDVQMQD PQLERLVASV PALYSDAYDI AQIMELCRF- -------ISW ENSTTRP00000001269/1-237 IATSDVQMQD PQLERLVASV PALYSDAYDI AQIMELYSFP DEDEIASSSF 251 300 ENSP00000335578/1-315 HCLYQYLSPT KYQVGGQGSS LSIFAGPAVG LSPAQTWPNM TSQAFEAYSL ENSBTAP00000002930/1-236 YSLYQYLSPT R--------- -PIFADPAVG LFPGQTSFSV TSWSFAVYSP bmy_10099T0/1-141 ANLLQY---- ---------- ---------- ---------- --DKLELCSL ENSTTRP00000001269/1-237 HSLYHYLSPT KQL---ESSF LSLFADPAVG FSPGQTCFSM TSWSFAAYSL 301 350 ENSP00000335578/1-315 TDSLEFQKTS NMVDLGFL ENSBTAP00000002930/1-236 QDSLEFQNPS ITVHFGF- bmy_10099T0/1-141 QSKKQPGIPE PL------ ENSTTRP00000001269/1-237 RNSLEFQNPF SMAHFGGC