KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:36 2014 Check: 00 .. Name: ENSP00000305204/1-745 Len: 922 Check: 8557 Weight: 1.00 Name: ENSBTAP00000002964/1-744 Len: 922 Check: 1737 Weight: 1.00 Name: ENSTTRP00000010472/1-737 Len: 922 Check: 8646 Weight: 1.00 Name: bmy_09026T0/1-916 Len: 922 Check: 6830 Weight: 1.00 Name: BACU017755/1-807 Len: 922 Check: 1633 Weight: 1.00 // 1 50 ENSP00000305204/1-745 ------MVGP G--------- ---------- PTAAAAV--- ---------- ENSBTAP00000002964/1-744 ------MVRP G--------- ---------- LSAAA----- ---------- ENSTTRP00000010472/1-737 ------MVQP G--------- ---------- PSAAA----- ---------- bmy_09026T0/1-916 MTSSRCVLRA GTKGDPRVSP LGGSGRSARL PASASPLAFP VLGALTRAQA BACU017755/1-807 MTSSRCVLRA GTKGDPRVSP LGGSGRSARL PASASPLAFP VLGALTRAQA 51 100 ENSP00000305204/1-745 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002964/1-744 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010472/1-737 ---------- ---------- ---------- ---------- ---------- bmy_09026T0/1-916 LGSGEKSGPG IGEGVRGAMC LPGIFPVTPA AALQKAVIVT SFGISRVCLL BACU017755/1-807 LGSGEKSGPG I--------- ---------- ---------- ---------- 101 150 ENSP00000305204/1-745 ----EERQRK LQEYLAAKGK LKSQNTKPYL KSKNNCQNQP PSKSTIRPKN ENSBTAP00000002964/1-744 ----EERQRK LQEYLAAKGK LKCQNTKPYL KAKNNCPNPP HSKSTIGPKK ENSTTRP00000010472/1-737 ----EERQRK LQEYLAAKGK LKCQNAKPYL KAKNNCPNPP PSKSTIRPKK bmy_09026T0/1-916 ACFAEERQRK LQEYLAAKGK LKCQNTKPYL KAKNNCPKPP PSKSTIRPKK BACU017755/1-807 ----EERQRK LQEYLAAKGK LKCQNTKPYL KAKNNCPKPP PSKLTIRPKE 151 200 ENSP00000305204/1-745 DVTNHVVLPV KPKRSISIKL QPRPPNTAGS QKPKLEPPKL LG-KRLTSEC ENSBTAP00000002964/1-744 DVTNHVALPV KTTRSINIKL QSRPANITRS QRPKLEPPKL -G-KRLTSES ENSTTRP00000010472/1-737 DVTNHVALPV KATRPISIKH QSRPASITGS QRPKLEPPKL LGRKRLTSEC bmy_09026T0/1-916 DVTNHVALPV KATRPISIKL QSRPASITGS QRPKLEPPKL LGKKRLTSEC BACU017755/1-807 DVTNHVALPV KATRPISIKL QSRPASITGS QRPKLEPPKL LGKKRLTSEC 201 250 ENSP00000305204/1-745 VSSNPYSKPS SKSFQQCEAG SSTTGELSRK PVGSLNIEQL KTTKQQLTDQ ENSBTAP00000002964/1-744 VSSNPNGKPP GNSQQLRGFG SSTDGKQPRK TMGSLNVQKL KTTKQQVTDQ ENSTTRP00000010472/1-737 VSSNPNRKPS GSSQHHHEFG SSTTGELPRE TTGSLNIQEL KTKKQQVTQQ bmy_09026T0/1-916 VSSNPNCKPS GSSQQQHEFG SSTTGKLSRK TMGSLNIQEL KTTKQQVTQQ BACU017755/1-807 ASSNPNCKPS RSSQRQHEFG SSTTGKLSRK TMGSLNIQEL KTTKQQVTQQ 251 300 ENSP00000305204/1-745 GNGKCIDFMN NIHVENESLD NFLKETNKEN LLDILTEPER KPDPKLYTRS ENSBTAP00000002964/1-744 RTAKGTDPVD NTHVENESLG GCLKEMNKEN LPQDLPNSER KPNPESWTIN ENSTTRP00000010472/1-737 GPAKCTDSVD T-HVGDESLG SCLKETNKES SPQILPDSGG KPNPELGTAS bmy_09026T0/1-916 GTAKCTDSVD NTHVENESLG SCLKEMNKEN LPQILPDSER KPNPELGTVS BACU017755/1-807 GTAKCTDSVD NTHVENESLG SCLKEMNKEN LPQILPNSER KPNPELGTVS 301 350 ENSP00000305204/1-745 KPKTDSYNQT KNSLVP-KQA LGKSSVNSAV LKDRVNKQFV GETQSRTFPV ENSBTAP00000002964/1-744 KPQT---NQT KSSLASTREV LDKSSVNSAA LKEGVIKPFV EETQISVPPG ENSTTRP00000010472/1-737 KPKT---NQT KSSVAPTKEV LGKRSVHSAV LKDRANKQFL EDTQIRIPPE bmy_09026T0/1-916 KPKT---NQT KSSMAPTKEV LGKRSVNSAV LKERVNKQFV EETQIRIPPE BACU017755/1-807 KPKT---NQT KSSMAPTKEV LGKRSVTSAV LKERVNKQFV EETQIRIPPE 351 400 ENSP00000305204/1-745 KSQQLSRGAD LARPGVKPSR TVPSHFIRTL SKVQSSKKPV VKNIKDIKVN ENSBTAP00000002964/1-744 KSQKLSRVAD LIRPGGKPPK TLPSHFVQTL NRTQATKKTV VKDIKSIKVN ENSTTRP00000010472/1-737 KAQQLSRGTD LARPGGKPPK TVSSHFVQTL NRTQASKKTV VKDIKNIKVN bmy_09026T0/1-916 KSQQLSRGTD LARPGGKPPK TVSSHFVQTL NRTQASKKTV VKDIKNIKVN BACU017755/1-807 KSQQLSRGTD LARPGGKPPK TVSSHFVQTL NRTQASKKTV VKDIKNIKVN 401 450 ENSP00000305204/1-745 RSQYERPNET KIRSYPVTEQ RVKHTKPRTY PSLLQGEYNN RHPNIKQDQK ENSBTAP00000002964/1-744 RSKYERPNEA KLQSYTVTEQ KVKHSKPSTH PSVLQGGCNH RHPNIKQDHK ENSTTRP00000010472/1-737 RGKYERPNET KLQSRTVTEQ KVKHSKPSTY PKVLQRGCNN RHPNTKQDHK bmy_09026T0/1-916 RGKYERPSET KLQSCTVTEQ KVKHSKPSTY PKVLQRGCNN RHPNTKQDHI BACU017755/1-807 RGKYERPSET KLPSCTVTEQ KVKHSKPSTY PKVLQRGCNN RHPNTKQDHK 451 500 ENSP00000305204/1-745 SSQVCI-PQT SCVLQKSKAI SQRPNLTVGR FNSAIPSTPS IRPNGTSGNK ENSBTAP00000002964/1-744 PTQACCRPQT SYALQKSKAI SQRPNLTVGS FNSVIPSTPS IRANGATGNK ENSTTRP00000010472/1-737 PTQACCRRRT SYVLQKSKAI SQRPNLTVGS FNSVIPSTPS IRANGAKGNK bmy_09026T0/1-916 PTQACCRRRT SYVLQKSKAI SQRPNLTVGS FNSVIPSTPS IRANGAKGNK BACU017755/1-807 PTQACCRRRT SYVLQKSKAI SQRPNLTVGS FNSVIPSTPS IRANGAKGNK 501 550 ENSP00000305204/1-745 HNNNGFQQKA QTLDSKLKKA VPQNHFLNKT APKTQADVTT V------NGT ENSBTAP00000002964/1-744 CNNSC-QQRA RTLDSKFKSA PPQKCFLNKT APRTQAGGPT ISGRGVPNGA ENSTTRP00000010472/1-737 CNNSC-QQKA RTLDSKLKRA LPQNCFLNKT APRTQAGGTT V------NGT bmy_09026T0/1-916 CNNSC-QQKA QTLDSKLKRA LPQNCFLNKT APRTQAGGTT INGRGLPNGT BACU017755/1-807 CNNSC-QQKA QTLDSKLKRA LPQNCFLNKT APRTQAGGTT INGRGLPNGT 551 600 ENSP00000305204/1-745 QTNPNIKKKA TAEDRRKQLE EWQKSKGKTY KRPPMELKTK RKVIKEMNIS ENSBTAP00000002964/1-744 QTNPC--KKI AAEDRRKQLE EWRKSKGKIY KRPPMELKTK RKIIEEMNIS ENSTTRP00000010472/1-737 QTNPS--KKT TAEDRRKQLE EWQKSKGRIY KRPPMELKTK RKIIEEMNIS bmy_09026T0/1-916 QTNPN--KKT TAEDRRKQLE EWQKSKGRIY KRPPMELKTK RKIIEEMNIS BACU017755/1-807 QTNPN--KKT TAEDRRKQLE EWQKSKGRIY KRPPMELKTK RKIIEEMNIS 601 650 ENSP00000305204/1-745 FWKSIEKEEE EKKAQLELSS KINNTLTECL NLIEGGVPSN EILNILSSIP ENSBTAP00000002964/1-744 FWKSMEKEEE EKKAQLELSN KINNTLTECL QLIERGVLSN EVFAILSSIP ENSTTRP00000010472/1-737 FWKSMEKEEE EKKAQLELSS KINNTLTECL QLIEGGVHSN EIGAILSSIP bmy_09026T0/1-916 FWKSMEKEEE EKKAQLELSS KINNTLTECL QLIERGVHSN EIFAILSSIP BACU017755/1-807 FWKSMEKEEE EKKAQLELSS KINNTLTECL QLIERGVHSN EIFAILSSIP 651 700 ENSP00000305204/1-745 EAEKFAKFWI CKAKLLASKG TFDVIGLYEE AIKNGATPIQ ELRKVVLNIL ENSBTAP00000002964/1-744 EAEKFAKFWI CKAKLLASKG TFDVIGLYEE AIRNGATPIQ ELREVVLNIL ENSTTRP00000010472/1-737 EAEKFAQFWI CKAKLLASKG TFDVIGLYEE AIRNGARPIQ ELRKVVLNIL bmy_09026T0/1-916 EAEKFAKFWI CKAKLLASKG TFDVIGLYED AIRNGARPIQ ELREVVLNIL BACU017755/1-807 EAEKFAKFWI CKAKLLASKG TFDVIGLYED AIRNGARPIQ ELREVVLNIL 701 750 ENSP00000305204/1-745 QDSNRTTEGI TSDSLVAETS ITSVEELAKK MESVKSCLSP KEREQVTATP ENSBTAP00000002964/1-744 QDRNRTTEGM TSNSLVAETN ITSIEELAKK TESGASCLSP KESEQMSVTP ENSTTRP00000010472/1-737 QDPDRTTE-- ASDSLAAETN ITSIEMLAKK MESGTSCLSP KEREQVSATP bmy_09026T0/1-916 QDPDRTTEGI TSDSLAAETN ITSIEMLAEK XESGTSCLPP KEREQVSATX BACU017755/1-807 QDPDRTTEGI TSDSLAAETN ITSIEMLAEK TESGTSCLPP KEREQVSATP 751 800 ENSP00000305204/1-745 RIAKAEQHNY PGIKLQIGPI PRINGMPEVQ DMKFITPVRR SSRIERAVSR ENSBTAP00000002964/1-744 QITKSEQDGH PGIKLQIAPI PRINGMPEVQ DMKLITPVRR SARIERAVSR ENSTTRP00000010472/1-737 QITKSEQDNH PGIKLQIAPI PRINGMPEVQ DMKLITPVRR SARIERAVSR bmy_09026T0/1-916 QITKSEQDNH PGIKLQIAPI PRINGMPEVQ DMKLITPVRR SARIERAVSH BACU017755/1-807 QITKSEQDNH PGIKLQIAPI PRINGMPEVQ DMKLITPVRR SARIERAVSH 801 850 ENSP00000305204/1-745 YPEMLQEHDL VVASLDELLE VEETKCFIFR RNEALPVTL- ---------- ENSBTAP00000002964/1-744 YPEMLQEHDL VVASLNELLE VEETECFIFR KNEALPVTL- ---------- ENSTTRP00000010472/1-737 YPEMLQEHDL VVASLNELLE VEETECFIFR KNEALPVTL- ---------- bmy_09026T0/1-916 YPEMLQEHDL VVASLSELLE VEETECFIFR KNEALPRDVS EPPRDKKCTY BACU017755/1-807 YPEMLQEHDL VVASLSELLE VEETECFIFR KNEALPSIV- ---------- 851 900 ENSP00000305204/1-745 ---------- ---------- ---------- ---------- --G------- ENSBTAP00000002964/1-744 ---------- ---------- ---------- ---------- --G------- ENSTTRP00000010472/1-737 ---------- ---------- ---------- ---------- --G------- bmy_09026T0/1-916 LGGLGLESNS LGLLSDFTSP WESLILGDER NASNKNKREQ QTGVGKGPLP BACU017755/1-807 ---------- ---------- ---------- ---------- --SVLQLSSQ 901 950 ENSP00000305204/1-745 ---FQTPES- ---------- -- ENSBTAP00000002964/1-744 ---FPVSES- ---------- -- ENSTTRP00000010472/1-737 ---FQVLES- ---------- -- bmy_09026T0/1-916 RQFFALLGDT WPEKTSEPQR LS BACU017755/1-807 ENSFAIASS- ---------- --