KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:38 2014 Check: 00 .. Name: ENSP00000382767/1-1132 Len: 1159 Check: 7387 Weight: 1.00 Name: ENSBTAP00000002970/1-1078 Len: 1159 Check: 7737 Weight: 1.00 Name: bmy_02056T0/1-565 Len: 1159 Check: 5261 Weight: 1.00 Name: BACU002253/1-979 Len: 1159 Check: 9410 Weight: 1.00 Name: ENSTTRP00000006440/1-1050 Len: 1159 Check: 5224 Weight: 1.00 // 1 50 ENSP00000382767/1-1132 MQRRGAGLGW PRQQQQQPPP LAVGPRAAAM VPSGGVPQGL GGRSACALLL ENSBTAP00000002970/1-1078 ---------- ---------- ---------- ---------- ---------- bmy_02056T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU002253/1-979 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006440/1-1050 ---------- ---------- ---------- -----MAPLP KKQPNKNPLH 51 100 ENSP00000382767/1-1132 LCYLNVVPSL GRQTSLTTSV IPKAEQSVAY KDFIYFTVFE GNVRNVSEVS ENSBTAP00000002970/1-1078 ----NFVPSL GRQTSLTTSV IPRAEQSVAY KDFIYFTIFE GNVRNVSEVS bmy_02056T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU002253/1-979 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006440/1-1050 GRELNFVPSL GRQTSLTTSV IPRAEQSVAY EDFIYFTVFE GNVRNVSEVS 101 150 ENSP00000382767/1-1132 VEYLCSQPCV VNLEAVVSSE FRSSIPVYKK RWKNEKHLHT SRTQIVHVKF ENSBTAP00000002970/1-1078 VEYLCSQPCV VNLEAVVSSE FRSSIPVYKK RWKNEKHLHT SRTQIVHVKF bmy_02056T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU002253/1-979 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006440/1-1050 VEYLCSQPCV VNLEAVVSSE FRSSIPVYKK RWKNEKHLHT SRTQIVHVKF 151 200 ENSP00000382767/1-1132 PSIMVYRDDY FIRHSISVSA VIVRAWITHK YSGRDWNVKW EENLLHAVAK ENSBTAP00000002970/1-1078 PSIMVYRDDY FIRHSISVSV VILRAWITHQ YSSGDLNVKW EENLLHAVAK bmy_02056T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU002253/1-979 ---MVYRDDY FIRHSISVSV VILRAWITHR YSGGDLNVKW EENLLHAVAK ENSTTRP00000006440/1-1050 PSIMVYRDDY FIRHSISVSV VILRAWITHR YSGGDLNVKW EENLLHAVAK 201 250 ENSP00000382767/1-1132 NYTLLQTIPP FERPFKDHQV CLEWNMGYIW NLRANRIPQC PLENDVVALL ENSBTAP00000002970/1-1078 NYTLLKTVPP FERPFKDHQV CLEWNMDYIW NLRANKIPQC PLENDVVTLL bmy_02056T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU002253/1-979 NYTLLKTIPP FERPFKDHQV CFEWNMGYIW NLRANKIPQC PLENDVVTLL ENSTTRP00000006440/1-1050 NYTLLKTIPP FERPFKDHQV CLEWNMGYIW NLRANKIPQC PLENDVVTLL 251 300 ENSP00000382767/1-1132 GFPYASSGEN TGIVKKFPRF RNRELEATRR QRMDYPVFTV SLWLYLLHYC ENSBTAP00000002970/1-1078 EFLYASSGEN TGIVKKFLRF QNRELEATRR QRIDYPVFTV SLWLYLLHYC bmy_02056T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU002253/1-979 GFLFASSGEN TGIVKKFPRF RNRELEATRR QRIDYPVFTV SLWLYLLHYC ENSTTRP00000006440/1-1050 GFLFASSGEN TGIVKKFPRF RNRELEATRR QRIDYPVFTV SLWLYLLHYC 301 350 ENSP00000382767/1-1132 KANLCGILYF VDSNEMYGTP SVFLTEEGYL HIQMHLVKGE DLAVKTKFII ENSBTAP00000002970/1-1078 KANLCGILYF VDSNEMYGTP SIFLTEEGYL HIQMHLVKGE DLAVKTKFTI bmy_02056T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU002253/1-979 KANLCGILYF VDSNEMYGTP SVFLTEEGHL HIQMHLVKGE DLAVKTKFTI ENSTTRP00000006440/1-1050 KANLCGILYF VDSNEMYGTP SVFLTEEGHL HIQMHLVKGE DLAVKTKFTI 351 400 ENSP00000382767/1-1132 PLKEWFRLDI SFNGGQIVVT TSIGQDLKSY HNQTISFRED FHYNDTAGYF ENSBTAP00000002970/1-1078 PLKEWFRLDI SFNGGQIVVT TSTGQDLKDY HNQTISFRED FHYNDTSGYF bmy_02056T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU002253/1-979 PLKEWFRLDM SFNGGQIVVT TSTGQDLKDY HNQTISFRED FHYNDTAGYF ENSTTRP00000006440/1-1050 PLKEWFRLDI SFNGGQIVVT TSTGQDLKDY HNQTISFRED FHYNDTAGYF 401 450 ENSP00000382767/1-1132 IIGGSRYVAG IEGFFGPLKY YRLRSLHPAQ IFNPLLEKQL AEQIKLYYER ENSBTAP00000002970/1-1078 IIGGSRYVAG IEGFFGPLKY YRLHALHPAQ IFNPLLEKQL SQQIKFYYER bmy_02056T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU002253/1-979 IIGGSRYVAG IEGFFGPLKY YRLHALHPAQ IFNPLLEKQL AEHIKLYYER ENSTTRP00000006440/1-1050 IIGGSRYVAG IEGFFGPLKY YRLHALHPAQ IFNPLLEKQL AEHIKLYYER 451 500 ENSP00000382767/1-1132 CAEVQEIVSV YASAAKHGGE RQEACHLHNS YLDLQRRYGR PSMCRAFPWE ENSBTAP00000002970/1-1078 CAEVQEIVSV YTSTAQQGDR RQEACNLRNS YLDLKLRYGR PSMCRAFPWE bmy_02056T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU002253/1-979 CAEVQEIVSV YTSTVQQGDR RQEACDLRNS YLDLKLRYGR PSMCRALLWE ENSTTRP00000006440/1-1050 CAEVQEIVSV YTSTVQ-GDR RQEACDLRNS YLDLKLRYGR PSTCRALLWE 501 550 ENSP00000382767/1-1132 KELKDKHPSL FQALLEMDLL TVPRNQNESV SEIGGKIFEK AVKRLSSIDG ENSBTAP00000002970/1-1078 KELRAKHRSL FQALLELSLV TVPRNQNESV LDIGGRIFEK AVKRLSSVDG bmy_02056T0/1-565 ---------- ---------- ---------- ---------- ---------- BACU002253/1-979 KELKAKHRSL FQALLEMGLV TVPRNQSESV LEIGGRMFEK AVKRLSTVDG ENSTTRP00000006440/1-1050 KELKAKHRSL FQTLLEMGLV TVLRNQSESV LEIGGRIFEK AVKRLSIVDG 551 600 ENSP00000382767/1-1132 LHQISSIVPF LTDSSCCGYH KASYYLAVFY ETGLNVPRDQ LQGMLYSLVG ENSBTAP00000002970/1-1078 LHQISSIVPF LMDASCCGYH KASYYLAVFY ETGLTVPRDQ LQGMLYSLVG bmy_02056T0/1-565 ---------- -MDASCCGYH KASYYLAVFY ETGLNIPRDQ LQGMLYSLVG BACU002253/1-979 LHQISSVVPF LMDASCCGYH KASYYLAVFY ETGLNVPRDQ LQGMLYSLVG ENSTTRP00000006440/1-1050 LHQISSVVPF LMDASCCGYH KASYYLAVFY ETGLNVPRDQ LQGMLYSLVG 601 650 ENSP00000382767/1-1132 GQGSERLSSM NLGYKHYQGI DNYPLDWELS YAYYSNIATK TPLDQHTLQG ENSBTAP00000002970/1-1078 GQGSERLSSM NLGYKHYQGI DNYPLDWELS YAYYSNIATK TPLDQHTLQG bmy_02056T0/1-565 GQGSERLSSM NLGYKHYQGI DHYALDWELS YAYYSNIATK TPLDQHTLQG BACU002253/1-979 GQGSERLSSM NLGYKHYQGI DHYALDWELS YAYYSNIATK TPLDQHTLQG ENSTTRP00000006440/1-1050 GQGSERLSSM NLGYKHYQGI DHYPLDWELS YAYYSNIATK TPLDQHTLQG 651 700 ENSP00000382767/1-1132 DQAYVETIRL KDDEILKVQT KEDGDVFMWL KHEATRGNAA AQQRLAQMLF ENSBTAP00000002970/1-1078 DQAYVETIRL KDDEILKVQT KEDGDVFMWL KHEATRGNAA AQQRLAQMLF bmy_02056T0/1-565 DQAYVETIRL KDDEILK--- ---------- ---------- --QRLAQMLF BACU002253/1-979 DQAYVETIRL KDDEILKVQT KEDGDVFMWL KHEATRGNAA AQQRLAQMLF ENSTTRP00000006440/1-1050 DQAYVETIRL KDDEILKVQT KEDGDIFMWL KHEATRGNAA AQQRLAQMLF 701 750 ENSP00000382767/1-1132 WGQQGVAKNP EAAIEWYAKG ALETEDPALI YDYAIVLFKG QGVKKNRRLA ENSBTAP00000002970/1-1078 WGQQGVTKNP EAAIEWYAKG ALETEDPALI YDYAIVLFKG QGVKKNRRLA bmy_02056T0/1-565 WGQQGVAKNP EAAIEWYAKG ALETEDPALI YDYAIVLFKG QGVKKNRRLA BACU002253/1-979 WGQQGVAKNP EAAIEWYAKG ALETEDPALI YDYAIVLFKG QGVKKNRRLA ENSTTRP00000006440/1-1050 WGQQGVAKNP EAAVEWYAKG ALETEDPALI YDYAIVLFKG QGVKKNRRLA 751 800 ENSP00000382767/1-1132 LELMKKAASK GLHQAVNGLG WYYHKFKKNY AKAAKYWLKA EEMGNPDASY ENSBTAP00000002970/1-1078 LELMKKAASK GLHQAVNGLG WYYHKFKKNY AKAAKYWLKA EEMGNPDASY bmy_02056T0/1-565 LELMKKAASK GLHQAVNGLG WYYHKFKKNY AKAAKYWLKA EEMGNPDASY BACU002253/1-979 LELMKKAASK GLHQAVNGLG WYYHKFKKNY AKAAKYWLKA EEMGNPDASY ENSTTRP00000006440/1-1050 LELMKKAASK GLHQAVNGLG WYYHKFKKNY AKAAKYWLKA EEMGNPDASY 801 850 ENSP00000382767/1-1132 NLGVLHLDGI FPGVPGRNQT LAGEYFHKAA QGGHMEGTLW CSLYYITGNL ENSBTAP00000002970/1-1078 NLGVLYLDGI FPGVPGRNQT LAGEYFHKAA QGGHIEGTLW CSLYYITGNL bmy_02056T0/1-565 NLGVLYLDGI FPGVPGRNQT LAGEYFHKAA QGGHIEGTLW CSLYYITGNL BACU002253/1-979 NLGVLYLDGI FPGVPGRNQT LAGEYFHKAA QGGHIEGTLW CSLYYITGNL ENSTTRP00000006440/1-1050 NLGVLYLDGI FPGVPGRNQT LAGEYFHKAA QGGHIEGTLW CSLYYITGNL 851 900 ENSP00000382767/1-1132 ETFPRDPEKA VVWAKHVAEK NGYLGHVIRK GLNAYLEGSW HEALLYYVLA ENSBTAP00000002970/1-1078 ETFPRDPEKA VVWAKHIAEK NGYLGHVIRK GLNAYLEGSW HEALLYYVLA bmy_02056T0/1-565 ETFPRDPEKA VVWTKHVAEK NGYLGHVIRK GLNAYLEGSW HEALLYYVLA BACU002253/1-979 ETFPRDPEKA VVWTKHVAEK NGYLGHVIRK GLNAYLEGSW HEALLYYVLA ENSTTRP00000006440/1-1050 ETFPRDPEKA VVWTKHVAEK NGYLGHVIRK GLNAYLEGSW HEALLYYVLA 901 950 ENSP00000382767/1-1132 AETGIEVSQT NLAHICEERP DLARRYLGVN CVWRYYNFSV FQIDAPSFAY ENSBTAP00000002970/1-1078 AETGIEVSQT NLAHICEERP DLAKRYLGVN CVWRYYNFSV FQIDAPSFAY bmy_02056T0/1-565 AETGIEVSQT NLAHICEERP DLAKRYLDVN CVWRYYNFSV FQIDAPSFAY BACU002253/1-979 AETGIEVSQT NLAHICEERP DLAKRYLDVN CVWRYYNFSV FQIDAPSFAY ENSTTRP00000006440/1-1050 AETGIEVSQT NLAHICEERP DLAKRYLDVN CVWRYYNFSV FQIDAPSFAY 951 1000 ENSP00000382767/1-1132 LKMGDLYYYG HQNQSQDLEL SVQMYAQAAL DGDSQGFFNL ALLIEEGTII ENSBTAP00000002970/1-1078 LKMGDLYYYG HQNQSQDLEL SVQMYAQAAL DGDSQGFFNL ALLIEEGAMI bmy_02056T0/1-565 LKMGDLYYYG HQNQSQDLEL SVQMYAQAAL DGDSQGFFNL ALLIEEGAII BACU002253/1-979 LKMGDLYYYG HQNQSQDLEL SVQMYAQAAL DGDSQGFFNL ALLIEEGAII ENSTTRP00000006440/1-1050 LKMGDLYYYG HQNQSQDLEL SVQMYAQAAL DGDSQGFFNL ALLIEEGAII 1001 1050 ENSP00000382767/1-1132 PHHILDFLEI DSTLHSNNIS ILQELYERCW SHSNEESFSP CSLAWLYLHL ENSBTAP00000002970/1-1078 PHHILDFLEI DPTIHSNNIS ILRELYERCW SHSNEESFSP CSLAWLYLNL bmy_02056T0/1-565 PHHILDFLEI DPTVHSNNIS IVQELYERCW SHSSEESFSP CSLAWLYLNL BACU002253/1-979 PHHILDFLEI DPTIHSNNIS IVQELYERCW SNSSEESFSP CSLAWLYLNL ENSTTRP00000006440/1-1050 PHHILDFLEI DPTIHSNNIS ILQELYERCW SHSSEESFSP CSLAWLYLNL 1051 1100 ENSP00000382767/1-1132 RLLWGAILHS ALIYFLGTFL LSILIAWTVQ YFQSVSASDP PPRPSQASPD ENSBTAP00000002970/1-1078 RLIWGAVLHS ALIYFLGTFL LSILIAWTVQ YFQSVSASSS HLMPARVSEN bmy_02056T0/1-565 RLIWGATLHS ALIYFLGTFL LSALIAWTVH --------GS HPTPTRAPPD BACU002253/1-979 RLIWGATLHS ALIYFLGTFL LSALIAWTVQ YCQSVSASGS HATPARAPRD ENSTTRP00000006440/1-1050 RLIWGATLHS ALIYFLGTFL LSALIAWTVQ YCQSVS---- ---------- 1101 1150 ENSP00000382767/1-1132 TATSTASPAV TPAADASDQD QPTVTNNPEP R--------- ---------- ENSBTAP00000002970/1-1078 PTDPTASPAV TPTADASAQD QPTITNNPEP R--------- ---------- bmy_02056T0/1-565 PTAPTASPAV TPAADASAQD QPTVINNPEP QIPRADSGYT KGYQTNTRSI BACU002253/1-979 PTAPTASPSV TPAADTSAQD QPTVTNNPEP R--------- ---------- ENSTTRP00000006440/1-1050 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000382767/1-1132 --------G ENSBTAP00000002970/1-1078 --------G bmy_02056T0/1-565 LITGTCRGG BACU002253/1-979 --------G ENSTTRP00000006440/1-1050 ---------