KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:40 2014 Check: 00 .. Name: ENSTTRP00000005834/1-984 Len: 1079 Check: 1937 Weight: 1.00 Name: ENSP00000360163/1-1054 Len: 1079 Check: 3715 Weight: 1.00 Name: ENSBTAP00000002973/1-1078 Len: 1079 Check: 9164 Weight: 1.00 Name: bmy_20500T0/1-946 Len: 1079 Check: 9367 Weight: 1.00 Name: BACU008849/1-992 Len: 1079 Check: 2825 Weight: 1.00 // 1 50 ENSTTRP00000005834/1-984 ---------- ---------- ---------- ---------- ---------- ENSP00000360163/1-1054 MEQDTAAVAA TVAAADATAT IVVIEDEQPG PSTSQEEGAA AAAT---EAT ENSBTAP00000002973/1-1078 MEPDTAAVAG TVAASDATAA IVLIEDDQPG PSTSKEEGAA AAATAATEAT bmy_20500T0/1-946 MEPDTAAVAA TVAASDATAT IVVIEDEQPG PSTSKEEGAA AAAT---EAT BACU008849/1-992 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000005834/1-984 ---------- --------LK LAAKASKSEK VYMDPEYEEK MKADRAKRFE ENSP00000360163/1-1054 AATEKGEKKK EKNVSSFQLK LAAKAPKSEK E-MDPEYEEK MKADRAKRFE ENSBTAP00000002973/1-1078 VATEKGEKKK EKNVSPFQLK LAVKASKSEK E-MDPEYEEK MKADRAKRFE bmy_20500T0/1-946 VAKEKGEKKK EKNLSPFQLK LAAKASKSEK E-MDPEYEEK MKADRAKRFE BACU008849/1-992 ---------- ---------- ---------- --MDPEYEEK MKADRAKRFE 101 150 ENSTTRP00000005834/1-984 FLLKQTELFA HFIQPSAQKS PTSPLNMKLG RPRIKKDDKQ SLISVGDYRH ENSP00000360163/1-1054 FLLKQTELFA HFIQPSAQKS PTSPLNMKLG RPRIKKDEKQ SLISAGDYRH ENSBTAP00000002973/1-1078 FLLKQTELFA HFIQPSAQKS PTSPLNMKLG RPRIKKDDKQ SLISVGDYRH bmy_20500T0/1-946 FLLKQTELFA HFIQPSAQKS PTSPLNMKLG RPRIKKDDKQ SLISVGDYRH BACU008849/1-992 FLLKQTELFA HFIQPSAQKS PTSPLNMKLG RPRIKKDDKQ SLISVGDYRH 151 200 ENSTTRP00000005834/1-984 RRTEQEEDEE LLSESRKTSN VCVRFEVSPS YVKGGPLRDY QIRGLNWLIS ENSP00000360163/1-1054 RRTEQEEDEE LLSESRKTSN VCIRFEVSPS YVKGGPLRDY QIRGLNWLIS ENSBTAP00000002973/1-1078 RRTEQEEDEE LLSESRKTSN VCVRFEVSPS YVKGGPLRDY QIRGLNWLIS bmy_20500T0/1-946 RRTEQEEDEE LLSESRKTSN VCVRFEVSPS YVKGGPLRDY QIRGLNWLIS BACU008849/1-992 RRTEQEEDEE LLSESRKTSN VCVRFEVSPS YVKGGPLRDY QIRGLNWLIS 201 250 ENSTTRP00000005834/1-984 LYENGVNGIL ADEMGLGKTL QTIALLGYLK HYRNIPGPHM VLVPKSTLHN ENSP00000360163/1-1054 LYENGVNGIL ADEMGLGKTL QTIALLGYLK HYRNIPGPHM VLVPKSTLHN ENSBTAP00000002973/1-1078 LYENGVNGIL ADEMGLGKTL QTIALLGYLK HYRNIPGPHM VLVPKSTLHN bmy_20500T0/1-946 LYENGVNGIL ADEMGLGKTL QTIALLGYLK HYRNIPGPHM VLVPKSTLHN BACU008849/1-992 LYENGVNGIL ADEMGLGKTL QTIALLGYLK HYRNIPGPHM VLVPKSTLHN 251 300 ENSTTRP00000005834/1-984 WMNEFKRWVP SLRVICFVGD KDARAAFIRD EMI-GEWDVC VTSYEMVIKE ENSP00000360163/1-1054 WMNEFKRWVP SLRVICFVGD KDARAAFIRD EMMPGEWDVC VTSYEMVIKE ENSBTAP00000002973/1-1078 WMNEFKRWVP SLRVICFVGD KDARAAFIRD EMMPGEWDVC VTSYEMVIKE bmy_20500T0/1-946 WMNEFKRWVP SLRVICFVGD KDAR------ ---------- ---------- BACU008849/1-992 WMNEFKRWVP SLRVICFVGD KDARAAFIRD EMMPGEWDVC VTSYEMVIKE 301 350 ENSTTRP00000005834/1-984 KSVFKKFHWR Y-VIDEAHRI KNEKSKLSEI VREFKSTNRL LLTGTPLQNN ENSP00000360163/1-1054 KSVFKKFHWR YLVIDEAHRI KNEKSKLSEI VREFKSTNRL LLTGTPLQNN ENSBTAP00000002973/1-1078 KSVFKKFHWR YLVIDEAHRI KNEKSKLSEI VRDFKSTNRL LLTGTPLQNN bmy_20500T0/1-946 ---------- ---------- ------LSEI VREFKSTNRL LLTGTPLQNN BACU008849/1-992 KSVFKKFHWR YLVIDEAHRI KNEKSKLSEI VREFKSTNRL LLTGTPLQNN 351 400 ENSTTRP00000005834/1-984 LHELWAXXXX XXXXXXXXXX DFDSWFDTKN CLGDQKLVER LHAVLKPFLL ENSP00000360163/1-1054 LHELWALLNF LLPDVFNSAD DFDSWFDTKN CLGDQKLVER LHAVLKPFLL ENSBTAP00000002973/1-1078 LHELWALLNF LLPDVFNSAE DFDSWFDTKN CLGDQKLVER LHTVLKPFLL bmy_20500T0/1-946 LHELWALLNF LLPDVFNSAD DFDSWFDTKN CLGDQKLVER LHAVLKPFLL BACU008849/1-992 LHELWALLNF LLPDVFNSAD DFDSWFDTKN CLGDQKLVER LHAVLKPFLL 401 450 ENSTTRP00000005834/1-984 RRIKTDVEKS LPPKKEIKIY LGLSKMQREW YTKILMKDID VLNSAGKMDK ENSP00000360163/1-1054 RRIKTDVEKS LPPKKEIKIY LGLSKMQREW YTKILMKDID VLNSSGKMDK ENSBTAP00000002973/1-1078 RRIKTDVEKS LPPKKEIKIY LGLSKMQREW YTKILMKDID VLNSAGKMDK bmy_20500T0/1-946 RRIKTDVEKS LPPKKEIKIY LGLSKMQREW YTKILMKDID VLNSAGKMDK BACU008849/1-992 RRIKTDVEKS LPPKKEIKIY LGLSKMQREW YTKILMKDID VLNSAGKMDK 451 500 ENSTTRP00000005834/1-984 MRLLNILMQL RKCCNHPYLF DGAEPGPPYT TDEHIVSNSG KMVVLDKLLA ENSP00000360163/1-1054 MRLLNILMQL RKCCNHPYLF DGAEPGPPYT TDEHIVSNSG KMVVLDKLLA ENSBTAP00000002973/1-1078 MRLLNILMQL RKCCNHPYLF DGAEPGPPYT TDEHIVSNSG KMVVLDKLLA bmy_20500T0/1-946 MRLLNILMQL RKCCNHPYLF DGAEPGPPYT TDEHIVSNSG KMVVLDKLLA BACU008849/1-992 MRLLNILMQL RKCCNHPYLF DGAEPGPPYT TDEHIVSNSG KMVVLDKLLA 501 550 ENSTTRP00000005834/1-984 KLKEQXXXXX XXXQMTRLLD ILEDYCMWRG YEYCRLDGQT PHEERED--- ENSP00000360163/1-1054 KLKEQGSRVL IFSQMTRLLD ILEDYCMWRG YEYCRLDGQT PHEERED--- ENSBTAP00000002973/1-1078 KLKEQGSRVL IFSQMTRLLD ILEDYCMWRG YEYCRLDGQT PHEEREEILK bmy_20500T0/1-946 KLKEQGSRVL IFSQMTRLLD ILEDYCMWRG YEYCRLDGQT PHEERE---- BACU008849/1-992 KLREQGSRVL IFSQMTRLLD ILEDYCMWRG YEYCRLDGQT PHEERED--- 551 600 ENSTTRP00000005834/1-984 --KFLEVELL GQREAIEAFN VRNSSKFIFM LSTRAGGL-I NLASADVVIL ENSP00000360163/1-1054 --KFLEVEFL GQREAIEAFN APNSSKFIFM LSTRAGGLGI NLASADVVIL ENSBTAP00000002973/1-1078 DFKIIFHEYQ GSNEAIEAFN IPNSSKFIFM LSTRAGGLGI NLASADVVIL bmy_20500T0/1-946 ---------- ---EAIEAFN VPNSSKFIFM LSTRAGGLGI NLASADVVIL BACU008849/1-992 --KFLEVELL GQREAIEAFN VPNSSKFIFM LSTRAGGLGI NLASADVVIL 601 650 ENSTTRP00000005834/1-984 YDSDWNPQVD LQAMDRAHRI GQKKPVRVFR LITDNTVEER IVERAEIKLR ENSP00000360163/1-1054 YDSDWNPQVD LQAMDRAHRI GQKKPVRVFR LITDNTVEER IVERAEIKLR ENSBTAP00000002973/1-1078 YDSDWNPQVD LQAMDRAHRI GQKKPVRVFR LITDNTVEER IVERAEIKLR bmy_20500T0/1-946 YDSDWNPQVD LQAMDRAHRI GQKKPVRVFR LITDNTVEER IVERAEIKLR BACU008849/1-992 YDSDWNPQVD LQAMDRAHRI GQKKPVRVFR LITDNTVEER IVERAEIKLR 651 700 ENSTTRP00000005834/1-984 LDSIVIQQGR LIDQQSNKMA KEEMLQMIRH GATHVFASKE SELTDEDITT ENSP00000360163/1-1054 LDSIVIQQGR LIDQQSNKLA KEEMLQMIRH GATHVFASKE SELTDEDITT ENSBTAP00000002973/1-1078 LDSIVIQQGR LIDQQSNKMA KEEMLQMIRH GATHVFASKE SELTDEDITT bmy_20500T0/1-946 LDSIVIQQGR LIDQQSNKMA KEEMLQMIRH GATHVFASKE SELTDEDITT BACU008849/1-992 LDSIVIQQGR LIDQQSNKMA KEEMLQMIRH GATHVFASKE SELTDEDITT 701 750 ENSTTRP00000005834/1-984 LLERGEKKTA EMNERLQKMG ESSLRNFRMD TEQSLYKFEG EDYREKQKLG ENSP00000360163/1-1054 ILERGEKKTA EMNERLQKMG ESSLRNFRMD IEQSLYKFEG EDYREKQKLG ENSBTAP00000002973/1-1078 LLERGEKKTA EMNERLQKMG ESSLRNFRMD IEQSLYKFEG EDYREKQKLG bmy_20500T0/1-946 LLERGEKKTA EMNERLQKMG ESSLRNFRMD TEQSLYKFEG EDYREKQKLG BACU008849/1-992 LLERGEKKTA EMNERLQKMG ESSLRNFRMD TEQSLYKFEG EDYREKQKLG 751 800 ENSTTRP00000005834/1-984 MVEWIEPPKR ERKANYAVDA YFREALRVSE PKIPKAPR-P KQPNIQDFQF ENSP00000360163/1-1054 MVEWIEPPKR ERKANYAVDA YFREALRVSE PKIPKAPRPP KQPNVQDFQF ENSBTAP00000002973/1-1078 MVEWIEPPKR ERKANYAVDA YFREALRVSE PKVPKAPRPP KQPNVQDFQF bmy_20500T0/1-946 MVEWIEPPKR ERKANYAVDA YFREALRVSE PKIPKAPRPP KQPNVQDFQF BACU008849/1-992 MVEWIEPPKR ERKANYAVDA YFREALRVSE PKIPKAPRPP KQPNVQDFQF 801 850 ENSTTRP00000005834/1-984 FPPRLFELLR KEILYYRTI- -YRVPRNPDI PNPAVAQREE QKKIDGAEPL ENSP00000360163/1-1054 FPPRLFELLE KEILYYRKTI GYKVPRNPDI PNPALAQREE QKKIDGAEPL ENSBTAP00000002973/1-1078 FPPRLFELLE KEILYYRKTI GYKVPRNPDI PNPAVAQREE QKKIDGAEPL bmy_20500T0/1-946 FPPRLFELLE KEILYYRKTI GYKVPRNPDI PNPAVTQREE QKKIDGAEPL BACU008849/1-992 FPPRLFELLE KEILYYRKTI GYKVPRNPDI PNPAVAQREE QKKIDGAEPL 851 900 ENSTTRP00000005834/1-984 TPEETEEKEK LLTQGFTNWT KRDFNQFIKA NEKYGRDDID NIAREVEGKS ENSP00000360163/1-1054 TPEETEEKEK LLTQGFTNWT KRDFNQFIKA NEKYGRDDID NIAREVEGKS ENSBTAP00000002973/1-1078 TPEETEEKEK LLTQGFTNWT KRDFNQFIKA NEKYGRDDID NIAREVEGKS bmy_20500T0/1-946 TPEETEEKEK LLTQGFTNWT KRDFNQFIKA NEKYGRDDID NIAREVEGKS BACU008849/1-992 TPEETEEKEK LLTQGFTNWT KRDFNQFIKA NEKYGRDDID NIAREVEGKS 901 950 ENSTTRP00000005834/1-984 PEEVMEYSAV FWERCNELQD IEKIMAQIER GEARIQRRIS IKKALDAKIA ENSP00000360163/1-1054 PEEVMEYSAV FWERCNELQD IEKIMAQIER GEARIQRRIS IKKALDAKIA ENSBTAP00000002973/1-1078 PEEVMEYSAV FWERCNELQD IEKIMAQIER GEARIQRRIS IKKALDAKIA bmy_20500T0/1-946 PEEVMEYSAV FWERCNELQD IEKIMAQIER GEARIQRRIS IKKALDAKIA BACU008849/1-992 PEEVMEYSAV FWERCNELQD IEKIMAQIER GEARIQRRIS IKKALDAKIA 951 1000 ENSTTRP00000005834/1-984 RYKAPFHQLR IQYGTSKGKN YTEEEDRFLI CMLHKMGFDR ENVYEELRQC ENSP00000360163/1-1054 RYKAPFHQLR IQYGTSKGKN YTEEEDRFLI CMLHKMGFDR ENVYEELRQC ENSBTAP00000002973/1-1078 RYKAPFHQLR IQYGTSKGKN YTEEEDRFLI CMLHKMGFDR ENVYEELRQC bmy_20500T0/1-946 RYKAPFHQLR IQYGTSKGKN YTEEEDRFLI CMLHKMGFDR ENVYEELRQC BACU008849/1-992 RYKAPFHQLR IQYGTSKGKN YTEEEDRFLI CMLHKMGFDR ENVYEELRQC 1001 1050 ENSTTRP00000005834/1-984 VRNAPQFRFD WFIKSRTAME FQRRCNTLIS LIEKENMEIE ERERAEKKKR ENSP00000360163/1-1054 VRNAPQFRFD WFIKSRTAME FQRRCNTLIS LIEKENMEIE ERERAEKKKR ENSBTAP00000002973/1-1078 VRNAPQFRFD WFIKSRTAME FQRRCNTLIS LIEKENMEIE ERERAEKKKR bmy_20500T0/1-946 VRNAPQFRFD WFIKSRTAM- ---------- ---------- ---------- BACU008849/1-992 VRNAPQFRFD WFIKSRTAME FQRRCNTLIS LIEKENMEIE ERERAEKKKR 1051 1100 ENSTTRP00000005834/1-984 ATKTPMVKFS AFS------- --------- ENSP00000360163/1-1054 ATKTPMVKFS AFS------- --------- ENSBTAP00000002973/1-1078 ATKTPMSQKR KAESATESSG KKDVKKVKS bmy_20500T0/1-946 ---------- ---------- --------- BACU008849/1-992 ATKTPMSQKR KAESATESSG KKDVKKVKS