KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:41 2014 Check: 00 .. Name: ENSTTRP00000013658/1-758 Len: 822 Check: 442 Weight: 1.00 Name: ENSP00000300954/1-755 Len: 822 Check: 8689 Weight: 1.00 Name: BACU006514/1-730 Len: 822 Check: 7001 Weight: 1.00 Name: ENSBTAP00000002975/1-672 Len: 822 Check: 6516 Weight: 1.00 Name: bmy_06675T0/1-807 Len: 822 Check: 1264 Weight: 1.00 // 1 50 ENSTTRP00000013658/1-758 MRPARSALWL RLTLALGLAL VGPMAVGWAS PRAPIYVSSW AVRVSQGYQE ENSP00000300954/1-755 MRPAPIALWL RLVLA--LAL VRPRAVGWAP VRAPIYVSSW AVQVSQGNRE BACU006514/1-730 ---------- ---------- ---MAVGWAS PRAPIYVSSW AVRVSQGYQE ENSBTAP00000002975/1-672 MRPARTALCL RLTLALGLAL VGPMAVGWAS ARAPIYVSSW AVRVSQGYQE bmy_06675T0/1-807 MRPSRSALWL RLTLALGLAL VGPMAVGWAS PRAPIYVSSW AVRVSQGYQE 51 100 ENSTTRP00000013658/1-758 IERLARKFGF VNLGPIFPDG QYFHLRHRGV VQQSLTPHWG HRLRLKKDPK ENSP00000300954/1-755 VERLARKFGF VNLGPIFPDG QYFHLRHRGV VQQSLTPHWG HRLHLKKNPK BACU006514/1-730 IELLARKFGF VNLGPIFPDG QYFHLRHRGV VQQSLTPHWG HRLRLKKDPK ENSBTAP00000002975/1-672 VDRLARKFGF VNFGQIFPDG QYFHLRHRGV VQQSLTPHWG HRLRLKKDPK bmy_06675T0/1-807 IERLARKFGF VNLGPIFPDG QYFHLRHRGV VQQSLTPHWG HRLRLKKDPK 101 150 ENSTTRP00000013658/1-758 VQWLQQQTVQ RRVKRSLVVP TDPWFSKQWY MNKEVQPDLN ILQVWSQGLS ENSP00000300954/1-755 VQWFQQQTLQ RRVKRSVVVP TDPWFSKQWY MNSEAQPDLS ILQAWSQGLS BACU006514/1-730 VQWFQQQTVQ RRVKRSLVVP TDPWFSKQWY MNKEVQPDLN ILQVWSQGLS ENSBTAP00000002975/1-672 VQWFQQQTVQ RRVKRSLVVP TDPWFSKQWY MNNEMQSDLN ILQVWSQGLS bmy_06675T0/1-807 VQWFQQQTVQ RRVKRSLVVP TDPWFSKQWY LNKEVQPDLN ILQVWSQGLS 151 200 ENSTTRP00000013658/1-758 GQGIVVSVLD DGIEKDHPDL WANYDPLASY DFNDYDPDPQ PRYTSSDENR ENSP00000300954/1-755 GQGIVVSVLD DGIEKDHPDL WANYDPLASY DFNDYDPDPQ PRYTPSKENR BACU006514/1-730 GQGIVVSVLD DGIEKDHPDL WANYDPLASY DFNDYDPDPQ PRYTPSDENR ENSBTAP00000002975/1-672 GQGVVVSVLD DGIEKDHPDL WANYDPLASY DFNDYDPDPQ PRYTPSDENR bmy_06675T0/1-807 GQGIVVSVLD DGIEKDHPDL WANYDPLASY DFNDYDPDPQ PRYTPSDENR 201 250 ENSTTRP00000013658/1-758 HGTRCAGEVA ATANNGFCGA GVSYNARIGX XXXXXXXXXX XXXAQSLSLQ ENSP00000300954/1-755 HGTRCAGEVA AMANNGFCGV GVAFNARIGG VRMLDGTITD VIEAQSLSLQ BACU006514/1-730 HGTRCAGEVA AMANNRFCGA GVAYNARIGG VRMLDGTITD VIEAQSLSLQ ENSBTAP00000002975/1-672 HGTRCAGEVA AMANNRFCGA GVAYNTRIGG VRMLDGTITD VIEAQSLSLQ bmy_06675T0/1-807 HGTRCAGEVA AMANNRFCGA GVAYNARIGG VRMLDGTITD VIEAQSLSLQ 251 300 ENSTTRP00000013658/1-758 PQHIHIYSAS WGPEDDGRTV DGPGILTREA FRRGVTKGRG GLGTLFIWAS ENSP00000300954/1-755 PQHIHIYSAS WGPEDDGRTV DGPGILTREA FRRGVTKGRG GLGTLFIWAS BACU006514/1-730 PQHIHIYSAS WGPEDDGRTV DGPGILTREA FRRGVTQGRG GLGTLFIWAS ENSBTAP00000002975/1-672 PQHIHIYSAS WGPEDDGRTV DGPGILTREA FRRGVTKGRG GLGTLFIWAS bmy_06675T0/1-807 PQHIHIYSAS WGPEDDGRTV DGPGILTREA FRRGVTQGRG GLGTLFIWAS 301 350 ENSTTRP00000013658/1-758 GNGGLHYDNC NCDGYTNSIH TLSVGSTTQQ GRVPWYSEAC ASTLTTTYSS ENSP00000300954/1-755 GNGGLHYDNC NCDGYTNSIH TLSVGSTTQQ GRVPWYSEAC ASTLTTTYSS BACU006514/1-730 GNGGLHYDNC NCDGYTNSIH TLSVGSTTQQ GHVPWYSEAC ASTLTTTYSS ENSBTAP00000002975/1-672 GNGGLHYDNC NCDGYTNSIH TLSVGSTTQQ GHVPWYSEAC ASTLTTTYSS bmy_06675T0/1-807 GNGGLHYDNC NCDGYTNSIH TLSVGSTTQQ GHVPWYSEAC ASTLTTTYSS 351 400 ENSTTRP00000013658/1-758 GIAANPQIVT TDLHHRCTDK HTGTSASAPL AAGMIALALE ANPFLTWRDM ENSP00000300954/1-755 GVATDPQIVT TDLHHGCTDQ HTGTSASAPL AAGMIALALE ANPFLTWRDM BACU006514/1-730 GVAADPQIVT TDLHHRCTDK HTGTSASAPL AAGMIALALE ANPFLTWRDM ENSBTAP00000002975/1-672 GVATDPQIVT TDLHHQCTDK HTGTSASAPL AAGMIALALE ANPLLTWRDM bmy_06675T0/1-807 GVAADPQIVT TDLHHRCTDK HTGTSASAPL AAGMIALALE ANPFLTWRDM 401 450 ENSTTRP00000013658/1-758 QHLVVRASRP AQLQAEDWRT NGVGRQVSHH YGYGLLDAGL LVDLARSWLP ENSP00000300954/1-755 QHLVVRASKP AHLQAEDWRT NGVGRQVSHH YGYGLLDAGL LVDTARTWLP BACU006514/1-730 QHLVVRASRP AQLQAEDWRT NGVGRQVSHH YGYGLLDAGL LVDLARSWLP ENSBTAP00000002975/1-672 QHLVVRASRP AQLQAEDWRT NGAGRRVSHH YGYGLLDAAL LVGLARSWLP bmy_06675T0/1-807 QHLVVRASRP AQLQAEDWRT NGVGRQVSHH YGYGLLDAGL LVDLARSWLP 451 500 ENSTTRP00000013658/1-758 TQPQRKCIIR IVHTPT---- ---------- -PILQ-MHV- EDVSACLGHA ENSP00000300954/1-755 TQPQRKCAVR VQSRPT---- ---------- -PILPLIYIR ENVSACAGLH BACU006514/1-730 TQPQKKCVIR IVHTPT---- ---------- -PILRVMHVR KNVSACIGHA ENSBTAP00000002975/1-672 TQPQKKCVIH IVHTRT---- ---------- -PILPVMHVR KNVSACAGHA bmy_06675T0/1-807 TQPQKKCIIR IVHTPTRPAG GALASRAAAP SPILRVMHVR KNVSACIGHA 501 550 ENSTTRP00000013658/1-758 NYIRSLEHV- VQLSLSYXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000300954/1-755 NSIRSLEHVQ AQLTLSYSRR GDLEISLTSP MGTRSTLVAI RPLDVSTEGY BACU006514/1-730 NYIRSLEHVQ VQLSLSYSRR GDLEISLTSP MGTRSTLVAI RPFDVSGQGY ENSBTAP00000002975/1-672 NSIRSLEHVQ VQLSLSYSRR GDLEISLTSP MGTRSTLVAI RPFDVSSQGY bmy_06675T0/1-807 NYIRSLEHVQ VQLSLSYSRR GDLEISLTSP MGTRSTLVAI RPFDVSGQGY 551 600 ENSTTRP00000013658/1-758 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXT-LYHYT LLLYGTA-ED ENSP00000300954/1-755 NNWVFMSTHF WDENPQGVWT LGLENKGYYF NTGT-LYRYT LLLYGTA-ED BACU006514/1-730 NNWTFMSTHF WDEDPRGLWT LVLENKGYYF NKGT-LYRYT LLLYGTA-ED ENSBTAP00000002975/1-672 NNWIFMSTHF WDEDPRGLWI LGLENKGYYF NTGEGQCACA AWVEGRAGRG bmy_06675T0/1-807 NNWIFMSTHF WDEDPRGLWT LVLENKGYYF NTGT-LYRYT LLLYGTA-ED 601 650 ENSTTRP00000013658/1-758 MTARPSGPQG TSSACVQRDT EGPCQECQSP AYLLGHLCLT YCP-PRYFNH ENSP00000300954/1-755 MTARPTGPQV TSSACVQRDT EGLCQACDGP AYILGQLCLA YCP-PRFFNH BACU006514/1-730 MTARPSGPQV TSSACVQRDT EGPCQGMGSK A--KKRVVLP TCPAPPTVEQ ENSBTAP00000002975/1-672 GRSQPHSPM- --------DV SVPHAECHSP AYILGHLCLA YCP-PRYFNH bmy_06675T0/1-807 MTARPSSPQV TSSACVQRDT EGPCQECQSP AYILGHLCLA YCP-PRYFNH 651 700 ENSTTRP00000013658/1-758 TQQAVTAEPG RPAA--PALR VCSSCHPSCY TCRGSSPLDC TACPPPSMLD ENSP00000300954/1-755 T-RLVTAGPG HTAA--PALR VCSSCHASCY TCRGGSPRDC TSCPPSSTLD BACU006514/1-730 ILEDVRGAPA EDLVFTALAR EGSVVIGKCA S--------T PSWPPPTSLI ENSBTAP00000002975/1-672 TQQAVTAGPG HSAV--PAMR ---------- ---------- ---------- bmy_06675T0/1-807 TQQAVTAEPG RPAA--PALR VCSSCHSSCY TCRGSSPLDC TACPPPSMLD 701 750 ENSTTRP00000013658/1-758 TQRGSCSG-- ---------- ---------- ------PDPP EGPPQPTATA ENSP00000300954/1-755 QQQGSCMG-- ---------- ---------- ------PTTP DSRPRLRAAA BACU006514/1-730 AESTD----- ---------- ---------- ------PPAP SGRAEDTEAQ ENSBTAP00000002975/1-672 ---------- ---------- ---------- ---------- -PRQLPAGLH bmy_06675T0/1-807 AQRGSCSGWP WPSGAPSSAA SSSWAARHHG WDTPARGTTP VTTPDPAASW 751 800 ENSTTRP00000013658/1-758 CP-------C RHGPAQAVVL ALLAVAFGSP LLCRILLVGC PPPWVGP-PG ENSP00000300954/1-755 CP-------H HRCPASAMVL SLLAVTLGGP VLCGMSMDLP LYAWLSR--- BACU006514/1-730 RE-------Q LYQQSRVYVA TNQRLWHAGA ----QLKQQR EELRRAREEL ENSBTAP00000002975/1-672 CL-------- ---PSTVHAG RAAGLLLGPP ---------- ---------- bmy_06675T0/1-807 NPELVDKDSQ RAPPPRSLVG TAALLSRRAP --CGNLPREG PGCHRGRGPG 801 850 ENSTTRP00000013658/1-758 AGATPITLQT PLQAGTQ--- -- ENSP00000300954/1-755 ARATPTKPQV WLPAGT---- -- BACU006514/1-730 EQEVSHVGQV ALPGAAAATS LG ENSBTAP00000002975/1-672 ----P----- ---------- -- bmy_06675T0/1-807 AAAWDPAPRT WQVQ------ --