KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:42 2014 Check: 00 .. Name: bmy_06009T0/1-338 Len: 612 Check: 503 Weight: 1.00 Name: ENSTTRP00000008291/1-382 Len: 612 Check: 7741 Weight: 1.00 Name: ENSP00000273588/1-403 Len: 612 Check: 5443 Weight: 1.00 Name: ENSBTAP00000002992/1-397 Len: 612 Check: 2035 Weight: 1.00 Name: BACU002398/1-610 Len: 612 Check: 6577 Weight: 1.00 // 1 50 bmy_06009T0/1-338 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008291/1-382 ---------- ---------- ---------- ---------- ---------- ENSP00000273588/1-403 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002992/1-397 ---------- ---------- ---------- ---------- ---------- BACU002398/1-610 MSRVSVPCHV KGTVALQVGD VRTSQGRPGV LVIDVTFPSV APFELQEIMF 51 100 bmy_06009T0/1-338 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008291/1-382 ---------- ---------- ---------- ---------- ---------- ENSP00000273588/1-403 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002992/1-397 ---------- ---------- ---------- ---------- ---------- BACU002398/1-610 KNYYTAFLTI RVRQHTSTHT PAKWVTCLRD YCLMPDPHSE EGAQEYVSLF 101 150 bmy_06009T0/1-338 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008291/1-382 ---------- ---------- ---------- ---------- ---------- ENSP00000273588/1-403 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002992/1-397 ---------- ---------- ---------- ---------- ---------- BACU002398/1-610 KHQMLCDMGK VLELRLILRQ PSPLWLSFTV EELQIYQQGP KDLGIWFQVS 151 200 bmy_06009T0/1-338 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008291/1-382 ---------- ---------- ---------- ---------- ---------- ENSP00000273588/1-403 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002992/1-397 ---------- ---------- ---------- ---------- ---------- BACU002398/1-610 PTLPASGQYA FALQSPSMTF PKWLSHPVPC EQPAPLLEGL PDPSRVSSEV 201 250 bmy_06009T0/1-338 ---------- ---------- ----METSLL CRALQ----- ---------H ENSTTRP00000008291/1-382 --------MQ RAGSMMSRLG SCLQALPSAL RRSLSSAQDV LRRTPLYDFH ENSP00000273588/1-403 --------MQ RAVSVVARLG FRLQAFPPAL CRPLSCAQEV LRRTPLYDFH ENSBTAP00000002992/1-397 ---------- ----MVSRLS SRLQALASAP CRSLSCAQDV LHRTPLYDFH BACU002398/1-610 QQMWALTEMI RASHTSTRIG -RFDALPSAL RRSLSSAQDV IRRTPLYDFH 251 300 bmy_06009T0/1-338 LAHGR----- ---------- ---------- ---CSVRGPR ANVVFLSF-Q ENSTTRP00000008291/1-382 LAHGGKMVAF AGWNLPVQYR DSHVDSHLHT RRHCSLFDVS HMLQTKIFGH ENSP00000273588/1-403 LAHGGKMVAF AGWSLPVQYR DSHTDSHLHT RQHCSLFDVS HMLQTKILGS ENSBTAP00000002992/1-397 LAHGGKMVAF AGWSLPVQYR DSHVNSHLHT RQHCSLFDVS HMLQTKIFGC BACU002398/1-610 LAHGGKMVAF AGWNLPVQYR DSHVDSHLHT RRHCSLFDVS HMLQTKIFGH 301 350 bmy_06009T0/1-338 DKVRELQNM- -GSDVGLEVM DNALLALQV- ---WYHALLL PATRLHGLWA ENSTTRP00000008291/1-382 DRVKLMESLV VGDIAELKPN QXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000273588/1-403 DRVKLMESLV VGDIAELRPN QGTLSLFTNE AGGILDDLIV TNTSEGHLYV ENSBTAP00000002992/1-397 DRVKLMESLV VGDIAELKPN QGTLSLFTNE AGGILDDLIV TSASEGHLYV BACU002398/1-610 DRVKLMESLV VGDIAELKPN QGTLSLFTNE AGGILDDLIV TNTSEGHLYV 351 400 bmy_06009T0/1-338 RASSPTYRVG LAQGLFWSLR AVIQLSGAPG PGHLVIGSLG -PGPTAAQVL ENSTTRP00000008291/1-382 XXXXXXXXXX XXXXXXXXXX XXXXMGNDVG LEVMDNALL- LQGPTAAQVL ENSP00000273588/1-403 VSNAGCWEKD LAL-MQDKVR ELQNQGRDVG LEVLDNALLA LQGPTAAQVL ENSBTAP00000002992/1-397 VSNAGCREKD LTL-MQDKVR ELQNKGSDVA LEVMDNALLA LQGPTAAQVL BACU002398/1-610 VSNAGCWEKD LTL-MQDKVR ELQNMGSDVG LEVMDNALLA LQGPTAAQVL 401 450 bmy_06009T0/1-338 QAGVADDLRK LPFMTSAVME VFGVSGCRVT RCGYTGEDGV EISVLAAEAV ENSTTRP00000008291/1-382 QAGVADDLRK LPFMTSAVME VFGVSGCRVT RCGYTGEDGV EISVLAAEAV ENSP00000273588/1-403 QAGVADDLRK LPFMTSAVME VFGVSGCRVT RCGYTGEDGV EISVPVAGAV ENSBTAP00000002992/1-397 QAGVADDLRK LPFMTSAVME VFGVSGCRVT RCGYTGEDGV EISVPAAEAV BACU002398/1-610 QAGVADDLRK LPFMTSAVME VFGVSGCRVT RCGYTGEDGV EISVLAAEAV 451 500 bmy_06009T0/1-338 RLATALLENP EVKLAGLAAR DSLRLEAGLC LYGNDIDEHT TPVEGSLSWT ENSTTRP00000008291/1-382 RLATALLENP EVKLAGLAAR DSLRLEAGLC LYGNDIDEHT TPVEGSLSWT ENSP00000273588/1-403 HLATAILKNP EVKLAGLAAR DSLRLEAGLC LYGNDIDEHT TPVEGSLSWT ENSBTAP00000002992/1-397 HLAAALLKNP EVKLAGLAAR DSLRLEAGLC LYGNDIDEHT TPVEGSLSWT BACU002398/1-610 RLATALLENP EVKLAGLAAR DSLRLEAGLC LYGNDIDEHT TPVEGSLSWT 501 550 bmy_06009T0/1-338 LGKRRRAAMD FPGASVIVPQ LKGKVQRRRV GLMCEGAPVR AHNPILSTEG ENSTTRP00000008291/1-382 LGKRRRAAMD FPGASVIVPQ LKGKVQRRRV GLMCEGAPVR AHNPILSTEG ENSP00000273588/1-403 LGKRRRAAMD FPGAKVIVPQ LKGRVQRRRV GLMCEGAPMR AHSPILNMEG ENSBTAP00000002992/1-397 LGKRRRAAMD FPGASVIVPQ LKSKAQRRRV GLMCDGAPVR AQSPILSPEG BACU002398/1-610 LGKRRRAAMD FPGASVIVPQ LKGKVQRRRV GLMCEGAPVR AHNPILSTEG 551 600 bmy_06009T0/1-338 TVLGAVTSGC PSPCLRKNVA MGYVPYEYSR PGTLLLVEVR RKQQMAMVSK ENSTTRP00000008291/1-382 TVLGAVTSGC PSPCLKKNVA MGYVPCEYSR PGTLLLVEVR R--------- ENSP00000273588/1-403 TKIGTVTSGC PSPSLKKNVA MGYVPCEYSR PGTMLLVEVR RKQQMAVVSK ENSBTAP00000002992/1-397 TVIGAVTSGC PSPCLKKNVA MGYVPYEYSR PGTPLLVEVR RKQQPAVVSK BACU002398/1-610 TVLGAVTSGC PSPCLRKNVA MGYVPYEYSR PGTLLLVEVR RKQQMAMVSK 601 650 bmy_06009T0/1-338 MPFVPTNYYT LK ENSTTRP00000008291/1-382 ---------- -- ENSP00000273588/1-403 MPFVPTNYYT LK ENSBTAP00000002992/1-397 MPFVSTNYYI LK BACU002398/1-610 MPFVPTNYYT LK