KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:43 2014 Check: 00 .. Name: ENSTTRP00000002048/1-1080 Len: 1160 Check: 3505 Weight: 1.00 Name: ENSP00000003302/1-1077 Len: 1160 Check: 6522 Weight: 1.00 Name: ENSBTAP00000002998/1-1081 Len: 1160 Check: 8110 Weight: 1.00 Name: bmy_19847T0/1-1154 Len: 1160 Check: 9143 Weight: 1.00 Name: BACU004006/1-1096 Len: 1160 Check: 7717 Weight: 1.00 // 1 50 ENSTTRP00000002048/1-1080 MTAELQQDDA AGAADRHGSS CQMLLNQLRE ITGIQDPSFL HEALKASNGD ENSP00000003302/1-1077 MTAELQQDDA AGAADGHGSS CQMLLNQLRE ITGIQDPSFL HEALKASNGD ENSBTAP00000002998/1-1081 MTAELQQDDA AGATDRHGSS CQMLLNQLRE ITGIQDPSFL HEALKASNGD bmy_19847T0/1-1154 MTAELQQDDA AGAADRHGSS CQMLLNQLRE ITGIQDPSFL HEALKASNGD BACU004006/1-1096 ---------- ---------S CQMLLNQLRE ITGIQDPSFL HEALKASNGD 51 100 ENSTTRP00000002048/1-1080 ITQAVSLLTD ERVKEPSQET AATEPSEVAG SAANKEELA- ---------- ENSP00000003302/1-1077 ITQAVSLLTD ERVKEPSQDT VATEPSEVEG SAANKEVLA- ---------- ENSBTAP00000002998/1-1081 ITQAVSLLTD ERVKEPSQET AA-EPSEEEG SAASKEELA- ---------- bmy_19847T0/1-1154 ITRAVSLLTD ERVKEPSQET AATEPSEVAG SAASKEELAS XYILAWSRSE BACU004006/1-1096 ITRAVSLLTD ERVKEPSQET AATEPSEVAG SAASKEELA- ---------- 101 150 ENSTTRP00000002048/1-1080 ---KVVDLTL DNNDDLHAAI AWSLLES-TL PADGXXXXXX XXXXXXXXXR ENSP00000003302/1-1077 ---KVIDLTH DNKDDLQAAI ALSLLESPKI QADGRDLNRM HEATSAETKR ENSBTAP00000002998/1-1081 ---KVIDLTH DSKDDLQAAI ALSLLESPKI QADGRDLNRM HEATSAETKR bmy_19847T0/1-1154 LAEKVIDLTH DNKDDLQAAI ALSLLESPKI QADGRDLNRM HEATSAETKR BACU004006/1-1096 ---KVIDLTH DNKDDLQAAI ALSLLESPKI QADGRDLNRM HEATSAETKR 151 200 ENSTTRP00000002048/1-1080 SKRKRCEVWG ENPNPNDWRR VDGWPVGLKN VGNTCWFSAV IQSLFQLPEF ENSP00000003302/1-1077 SKRKRCEVWG ENPNPNDWRR VDGWPVGLKN VGNTCWFSAV IQSLFQLPEF ENSBTAP00000002998/1-1081 SKRKRCEVWG ENPNPNDWRR VDGWPVGLKN VGNTCWFSAV IQSLFQLPEF bmy_19847T0/1-1154 SKRKRCEVWG ENPNPNDWRR VDGWPVGLKN VGNTCWFSAV IQSLFQLPEF BACU004006/1-1096 SKRKRCEVWG ENPNPNDWRR VDGWPVGLKN VGNTCWFSAV IQ-------- 201 250 ENSTTRP00000002048/1-1080 RRLVLSYSLP QNVLENCPSH TXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000003302/1-1077 RRLVLSYSLP QNVLENCRSH TEKRNIMFMQ ELQYLFALMM GSNRKFVDPS ENSBTAP00000002998/1-1081 RRLVLSYSLP QNVLENCPSH TEKRNIVFMQ ELQYLFALMM GSNRKFVDPS bmy_19847T0/1-1154 RRLVLSYSLP QNVLENCPSH TEKRNIVFMQ ELQYLFALMM GSNRKFVDPS BACU004006/1-1096 ---------- ---------- -EKRNIVFMQ ELQYLFALMM GSNRKFVDPS 251 300 ENSTTRP00000002048/1-1080 XXXXXXXXXX XXXXXXXQDV SEFTHKLLDW LEDAFQLAVN VN-NPRNKSE ENSP00000003302/1-1077 AALDLLKGAF RSSEEQQQDV SEFTHKLLDW LEDAFQLAVN VN-SPRNKSE ENSBTAP00000002998/1-1081 AALDLLKGAF RSPEEQQQDV SEFTHKLLDW LEDAFQLAVN VN-NPRNKSE bmy_19847T0/1-1154 AALDLLKGAF RSPEEQQQDV SEFTHKLLDW LEDAFQLAVN VNSNPRNKSE BACU004006/1-1096 AALDLLKGAF RSPEEQQQDV SEFTHKLLDW LEDAFQLAVN VN-NPRNKSE 301 350 ENSTTRP00000002048/1-1080 NPMVQLFYGT FLTEGIHEGK PFCNNETFGQ YPLQVNGYRN LDECLEGAMV ENSP00000003302/1-1077 NPMVQLFYGT FLTEGVREGK PFCNNETFGQ YPLQVNGYRN LDECLEGAMV ENSBTAP00000002998/1-1081 NPMVQLFYGT FLTEGIREGK PFCNNETFGQ YPLQVNGYRN LDECLEGAMV bmy_19847T0/1-1154 NPMVQLFYGT FLTEGIHEGK PFCNNETFGQ YPLQVNGYRN LDECLEGAMV BACU004006/1-1096 NPMVQLFYGT FLTEGIHEGK PFCNNETFGQ YPLQVNGYRN LDECLEGAMV 351 400 ENSTTRP00000002048/1-1080 EGDIELLPSD HSVKYGQERW FTKLPPVLTF ELSRFEFNQS LGQPEKIHNK ENSP00000003302/1-1077 EGDVELLPSD HSVKYGQERW FTKLPPVLTF ELSRFEFNQS LGQPEKIHNK ENSBTAP00000002998/1-1081 EGDIELLPSD HSVKYGQERW FTKLPPVLTF ELSRFEFNQS LGQPEKIHNK bmy_19847T0/1-1154 EGDIELLPSD HSVKYGQERW FTKLPPVLTF ELSRFEFNQS LGQPEKIHNK BACU004006/1-1096 EGDIELLPSD HSVKYGQERW FTKLPPVLTF ELSRFEFNQS LGQPEKIHNK 401 450 ENSTTRP00000002048/1-1080 LEFPQIIYMD RYMYRSKELV RSKRECIRKL KEEIKVLQQK LERYVKYGSG ENSP00000003302/1-1077 LEFPQIIYMD RYMYRSKELI RNKRECIRKL KEEIKILQQK LERYVKYGSG ENSBTAP00000002998/1-1081 LEFPQIIYMD RYMYRSKELV RSKRDCIRKL KEEIKILQQK LERYVKYGSG bmy_19847T0/1-1154 LEFPQIIYMD ----RSKELV RSKRECIRKL KEEIKVLQQK LERYVKYGSG BACU004006/1-1096 LEFPQIIYMD RYMYRSKELV RSKRECIRKL KEEIKVLQQK LERYVKYGSG 451 500 ENSTTRP00000002048/1-1080 PARFPLPDML KYVIEFASTK PASENSASQS DARMTLPLSS EHCPASD-LI ENSP00000003302/1-1077 PARFPLPDML KYVIEFASTK PASESCPPES DTHMTLPLSS VHCSVSD-QT ENSBTAP00000002998/1-1081 PARFPLPDML KYVIEFASTK PASESSASQS DACMTEPLSS AHCLTSD-LT bmy_19847T0/1-1154 PARFPLPDML KYVIEFASTK PASENSASQS DARVTLPLSS AHCPASD-LI BACU004006/1-1096 PARFPLPDML KYVIEFASTK PASENSASQS DARMTLPLSS AHCPASDHLI 501 550 ENSTTRP00000002048/1-1080 SKESTSKEST SQDAESTF-S SEGSLHKSKV ANQPLTPSRS SMEMPSHPAP ENSP00000003302/1-1077 SKESTSTESS SQDVESTFSS PEDSLPKSK- ---PLTSSRS SMEMPSQPAP ENSBTAP00000002998/1-1081 SKESTSEEST SQEAEGTFSS SEDSGRKSRM AEQPLKPPRS SVEMPAHPAP bmy_19847T0/1-1154 SKESTSKEST SQDAESTF-S SEDSLHKSKM ANQPLIPSRS CMEMPSHPAP BACU004006/1-1096 SKESTSKEST SQDAESTF-S SEDSLHKSKM ANQPLTPSRS FMEMPSHPAP 551 600 ENSTTRP00000002048/1-1080 RTVTDEEINF VKTCLQRWRS EIEQDIQDLK NCIASTTQTI EQMYCDPLLR ENSP00000003302/1-1077 RTVTDEEINF VKTCLQRWRS EIEQDIQDLK TCIASTTQTI EQMYCDPLLR ENSBTAP00000002998/1-1081 RTVTDEEINF VKTCLQRWRN EIEQDIQDLK NSIASTTQTI EQMYCDPLLR bmy_19847T0/1-1154 RTVTDEEINF VKTCLQRWRS EIEQDIQDLK NCIASTTQTI EQMYCDPLLR BACU004006/1-1096 RRVTDEEINF VKTCLQRWRS EIEQDIQDLK NCIASTTQTV EQMYCDPLLR 601 650 ENSTTRP00000002048/1-1080 QVPYRLHAVL VHEGQANAGH YWAYIYNQPR QVWLKYNDIS VTESSWEELE ENSP00000003302/1-1077 QVPYRLHAVL VHEGQANAGH YWAYIYNQPR QSWLKYNDIS VTESSWEEVE ENSBTAP00000002998/1-1081 QVPYRLHAVL VHEGQANAGH YWAYVYNQPR QVWLKYNDIS VTESSWEELE bmy_19847T0/1-1154 QVPYRLHAVL VHEGQANAGH YWAYIYNQPR QVWLKYNDIS VTESSWEELE BACU004006/1-1096 QVPYRLHAVL VHEGQANAGH YWAYIYNQPR QVWLKYNDIS VTESSWEELE 651 700 ENSTTRP00000002048/1-1080 RDSYGGLRNV SAYCLMYIND KLPHFSAEAA PNELDQMSGE VEALSVELKH ENSP00000003302/1-1077 RDSYGGLRNV SAYCLMYIND KLPYFNAEAA PTESDQMS-E VEALSVELKH ENSBTAP00000002998/1-1081 RDSYGGQRNV SAYCLMYIND KLPHFNAEAA PNELDQMSGE VEALSVELKH bmy_19847T0/1-1154 RDSYGGLRNV SAYCLMYIND KLPHFSAEAA PNELDQMSGE VEALSVELKH BACU004006/1-1096 RDSYGGLRNV SAYCLMYIND KLPHFSAEAA PNELDQMSGE VEALSVELKH 701 750 ENSTTRP00000002048/1-1080 YIQEDNWRFE QEVEEWEEEQ SCKIPQMESS TSSASQDFSS SQESSVASSH ENSP00000003302/1-1077 YIQEDNWRFE QEVEEWEEEQ SCKIPQMESS TNSSSQDYST SQEPSVASSH ENSBTAP00000002998/1-1081 YIQEDNWRFE QEVEEWEEEQ SCKIPQMASS TSSASQDFSP SQESSVASSH bmy_19847T0/1-1154 YIQEDNWRFE QEVEEWEEEQ SCKIPQMESS TSSASQDFSP SQESSVASSH BACU004006/1-1096 YIQEDNWRFE QEVEEWEEEQ SCKIPQMESS TSSASQDFSP SQESSVASSH 751 800 ENSTTRP00000002048/1-1080 GARCLSSEHA VIVKEQTAQA IANTARAYEK SGVEAALS-- ---------- ENSP00000003302/1-1077 GVRCLSSEHA VIVKEQTAQA IANTARAYEK SGVEAALS-- ---------- ENSBTAP00000002998/1-1081 GARCLSSEHA VIVKEQTAQA IANTAHAYEN SGVEAALS-- ---------- bmy_19847T0/1-1154 GARCLSSEHA VIVKEQTAQA IANTARAYEK SGVEAALSEL KEAEPQKPMS BACU004006/1-1096 GARCLSSEHA VIVKEQTAQA IANTARAYEK SGVEAALSEL KEAEPQKPMS 801 850 ENSTTRP00000002048/1-1080 ---------- ---------- ---------- ---------- ---------- ENSP00000003302/1-1077 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002998/1-1081 ---------- ---------- ---------- ---------- ---------- bmy_19847T0/1-1154 PETDLAEQPE QPAQARDAES AAQPNAEVSE VEIPSVGRIL VRSDADGYDE BACU004006/1-1096 PETDLAEQPE QPAQAHDAES AAQPNAEVSE VEIPSVGRIL VRSDADGYDE 851 900 ENSTTRP00000002048/1-1080 EVMLSPAMQG VILAIAKARQ TFDRDGSEAG LIKAFHEEYS RLYQLAKETP ENSP00000003302/1-1077 EVMLSPAMQG VILAIAKARQ TFDRDGSEAG LIKAFHEEYS RLYQLAKETP ENSBTAP00000002998/1-1081 EVMLSPAMQG VILAIAKARQ TFDRDGSEAG LIKAFHEEYS RLYQLAKETP bmy_19847T0/1-1154 EVMLSPAMQG VILAIAKARQ TFDRDGSEAG LIKAFHEEYS RLYQLAKETP BACU004006/1-1096 EVMLSPAMQG VILAIAKARQ TFDRDGSEAG LIKAFHEEYS RLYQLAKETP 901 950 ENSTTRP00000002048/1-1080 TSHSDPRLQH VLVYFFQNEA PKRVVERTLL EQFADKNLSY DERSISIMKV ENSP00000003302/1-1077 TSHSDPRLQH VLVYFFQNEA PKRVVERTLL EQFADKNLSY DERSISIMKV ENSBTAP00000002998/1-1081 TSHSDPRLQH VLIYFFQNEA PKRVVERTLL EQFADKNLSY DERSISIMKV bmy_19847T0/1-1154 TSHSDPRLQH VLVYFFQNEA PKRVVERTLL EQFADKNLSY DERSISIMKV BACU004006/1-1096 TSHSDPRLQH VLVYFFQNEA PKRVVERTLL EQFADKNLSY DERSISIMKV 951 1000 ENSTTRP00000002048/1-1080 AQAKLKEIGP DDMNMEEYKK WHEDYSLFRK VSVYLLTGLE LYQKGKYQEA ENSP00000003302/1-1077 AQAKLKEIGP DDMNMEEYKK WHEDYSLFRK VSVYLLTGLE LYQKGKYQEA ENSBTAP00000002998/1-1081 AQAKLKEIGP DDMNMEEYKK WHEDYSLFRK VSVYLLTGLE LYQKGKYQEA bmy_19847T0/1-1154 AQAKLKEIGP DDMNMEEYKK WHEDYSLFRK VSVYLLTGLE LYQKGKYQEA BACU004006/1-1096 AQAKLKEIGP DDMNMEEYKK WHEDYSLFRK VSVYLLTGLE LYQKGKYQEA 1001 1050 ENSTTRP00000002048/1-1080 LSYLVYAYQS NAALLMKGPR RGVKESVIAL YRRKCLLELN AKAASLFETN ENSP00000003302/1-1077 LSYLVYAYQS NAALLMKGPR RGVKESVIAL YRRKCLLELN AKAASLFETN ENSBTAP00000002998/1-1081 LSYLVYAYQS NATLLMKGPQ RGVKESVIAL YRRKCLLELN AKAASLFETN bmy_19847T0/1-1154 LSYLVYAYQS NAALLMKGPR RGVKESVIAL YRRKCLLELN AKAASLFETN BACU004006/1-1096 LSYLVYAYQS NAALLMKGPR RGVKESVIAL YRRKCLLELN AKAASLFETN 1051 1100 ENSTTRP00000002048/1-1080 DEHSVTEGIN VMNELIIPCI HLIINNDISK DDLDAIEIMR NHWCSYLGQD ENSP00000003302/1-1077 DDHSVTEGIN VMNELIIPCI HLIINNDISK DDLDAIEVMR NHWCSYLGQD ENSBTAP00000002998/1-1081 DEHSVTEGIN VMNELIIPCI HLIINNDISK DDLDAIEVMR NHWCSYLGQD bmy_19847T0/1-1154 DEHSVTEGIN VMNELIIPCI HLIINNDISK DDLDAIEIMR NHWCSYLGQD BACU004006/1-1096 DEHSVTEGIN VMNELIIPCI HLIINNDISK DDLDAIEIMR NHWCSYLGQD 1101 1150 ENSTTRP00000002048/1-1080 IAENLQLCLG EFLPRLLDPS AEIIVLKEPP TIRPNSPYDL CSRFAAVMES ENSP00000003302/1-1077 IAENLQLCLG EFLPRLLDPS AEIIVLKEPP TIRPNSPYDL CSRFAAVMES ENSBTAP00000002998/1-1081 IAENLQLCLG EFLPRLLDPS AEIIVLKEPP TIRPNSPYDL CSRFAAVMES bmy_19847T0/1-1154 IAENLQLCLG EFLPRLLDPS AEIIVLKEPP TIRPNSPYDL CSRFAAVMES BACU004006/1-1096 IAENLQLCLG EFLPRLLDPS AEIIVLKEPP TIRPNSPYDL CSRFAAVMES 1151 1200 ENSTTRP00000002048/1-1080 IQGVSTVTVK ENSP00000003302/1-1077 IQGVSTVTVK ENSBTAP00000002998/1-1081 IQGVSAVTVK bmy_19847T0/1-1154 IQGVSTVTVK BACU004006/1-1096 IQGVSTVTVK