KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:45 2014 Check: 00 .. Name: BACU013626/1-634 Len: 1390 Check: 4537 Weight: 1.00 Name: ENSTTRP00000013558/1-1332 Len: 1390 Check: 7542 Weight: 1.00 Name: ENSP00000366271/1-1336 Len: 1390 Check: 6891 Weight: 1.00 Name: bmy_01434T0/1-720 Len: 1390 Check: 8595 Weight: 1.00 Name: ENSBTAP00000003003/1-1309 Len: 1390 Check: 4153 Weight: 1.00 // 1 50 BACU013626/1-634 ---------- ---------- ---------- MSRALWFGSL -QRPIDRQRY ENSTTRP00000013558/1-1332 MAGPLMGSRE D-----PPKK DVVEKKKNYI YTKCFEFGSA -TRPIDRQRY ENSP00000366271/1-1336 MAGPQMGGSA EDHPPRKRHA AEKQKKKTVI YTKCFEFESA TQRPIDRQRY bmy_01434T0/1-720 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003003/1-1309 ---------- ---------- ---------- MEAEKDSGRR -LRPIDRQRY 51 100 BACU013626/1-634 DENEDLSDVE EIVSVRGFSL EEKLRSQLYQ GDFVHAMEGK DFNYEYVQRE ENSTTRP00000013558/1-1332 DENEDLSDVE EIVSVRGFSL EEKLRSQLYQ GDFVHAMEGK DFNYEYVQRE ENSP00000366271/1-1336 DENEDLSDVE EIVSVRGFSL EEKLRSQLYQ GDFVHAMEGK DFNYEYVQRE bmy_01434T0/1-720 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003003/1-1309 DENEDLSDVE EIVSARGFSL EEKLRSQLYQ GDFVHAMEGK DFNYEYVQRE 101 150 BACU013626/1-634 ALRVPLIFRE KDGLGIKMTD TSEAVPNFEE MFASRFTEDD KEHQEYLKRP ENSTTRP00000013558/1-1332 ALRVPLIFRE KDGLGIKMPD -----PDFT- ---------- ---------- ENSP00000366271/1-1336 ALRVPLIFRE KDGLGIKMPD -----PDFT- ---------- ---------- bmy_01434T0/1-720 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003003/1-1309 ALRVPLVFRE KDGLGIKMPD -----PDFT- ---------- ---------- 151 200 BACU013626/1-634 PESSPIVEEW NSRAGGNQRN RGSRLQDNRQ FRGSRRLVDV MDVNTQKGAE ENSTTRP00000013558/1-1332 ---------- ---------- ----VRDVKL LVXSRRLVDV MDVNTQKGSE ENSP00000366271/1-1336 ---------- ---------- ----VRDVKL LVGSRRLVDV MDVNTQKGTE bmy_01434T0/1-720 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003003/1-1309 ---------- ---------- ----VRDVKL LVGSRRLVDV MDVNTQKGTE 201 250 BACU013626/1-634 MSMSQFVRYY ETPEAQRDKL YNVISLEFSH TKLEHLVKRP TVVDLVDWVD ENSTTRP00000013558/1-1332 MSMSQFVRYY ETPEAQRDKL YNVISLEFSH TKLEHLVKRP TVVDLVDWVD ENSP00000366271/1-1336 MSMSQFVRYY ETPEAQRDKL YNVISLEFSH TKLEHLVKRP TVVDLVDWVD bmy_01434T0/1-720 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003003/1-1309 MSMSQFVRYY ETPEAQRDKL YNVISLEFSH TKLEHLVKRP TVVDLVDWVD 251 300 BACU013626/1-634 NMWPQHLKEK QTEATNAIAE MKYPKVKKYC LMSVKGCFTD FHIDFGGTSV ENSTTRP00000013558/1-1332 NMWPQHLKEK QTEATNAIAE MKYPKVKXXX XXXXXXXXXX XXXXXXXXXX ENSP00000366271/1-1336 NMWPQHLKEK QTEATNAIAE MKYPKVKKYC LMSVKGCFTD FHIDFGGTSV bmy_01434T0/1-720 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003003/1-1309 NMWPQHLKEK QTEATNAIAE MKYPKVKKYC LMSVKGCFTD FHIDFGGTSV 301 350 BACU013626/1-634 WYHVFRGGKI FWLIPPTLHN LALYEEWVLS GKQSDIFLGD RVERCQRIEL ENSTTRP00000013558/1-1332 XXXXXXXXXI FWLIPPTLHN LALYEEWVLS GKQSDIFLGD RVERCQRIEL ENSP00000366271/1-1336 WYHVFRGGKI FWLIPPTLHN LALYEEWVLS GKQSDIFLGD RVERCQRIEL bmy_01434T0/1-720 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003003/1-1309 WYHVFRGGKI FWLIPPTLHN LALYEEWVLS GKQSDIFLGD RVERCQRIEL 351 400 BACU013626/1-634 KQGYTFFIPS GWIHAVYTPV DSLVFGGNIL HSFNVPMQLR IYEIEDRTRV ENSTTRP00000013558/1-1332 KQGYTFFIPS GWIHAVYTPV DSLVFGGNIL HSFNVPMQLR IYEIEDRTRV ENSP00000366271/1-1336 KQGYTFFIPS GWIHAVYTPV DSLVFGGNIL HSFNVPMQLR IYEIEDRTRV bmy_01434T0/1-720 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003003/1-1309 KQGYTFFIPS GWIHAVYTPV DSLVFGGNIL HSFNVPMQLR IYEIEDRTRV 401 450 BACU013626/1-634 QPKFRYPFYY EMCWYVLERY VYCVTQRSYL TQEYQRESML IDAPRKPSID ENSTTRP00000013558/1-1332 QPKFRYPFYY EMCWYVLERY VYCVTQRSYL TQEYQRESML IDAPRKPSID ENSP00000366271/1-1336 QPKFRYPFYY EMCWYVLERY VYCVTQRSHL TQEYQRESML IDAPRKPSID bmy_01434T0/1-720 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003003/1-1309 QPKFRYPFYY EMCWYVLERY VYCMTQRSYL TQEYQRESML IDAPRKPSID 451 500 BACU013626/1-634 GFSSDSWLEM EEESCEQQPQ EE-EKEEEGE EEEEGADKTP KAPTDGPASP ENSTTRP00000013558/1-1332 GFSSDSWLEM EEESCEQQPQ EE-EKEGEGE EEEEGADKTP KAPTDGPASP ENSP00000366271/1-1336 GFSSDSWLEM EEEACDQQPQ EEEEKDEEG- ---EGRDRAP KPPTDGSTSP bmy_01434T0/1-720 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003003/1-1309 GFSSDSWLEM EEESCEQQPQ EEKEEEEEEE EEEEGADKTP RASTDGPASP 501 550 BACU013626/1-634 TSTPSEDQET PGKKPKAPAM RFLKRTLSNE SEDSVKSATV PIDYPKTPTG ENSTTRP00000013558/1-1332 SSTPSEDPEA PGKKPKAPAM RFLKRTLSNE SEDSVKSTTV PIDYPKTPTG ENSP00000366271/1-1336 TSTPSEDQEA LGKKPKAPAL RFLKRTLSNE SEESVKSTTL AVDYPKTPTG bmy_01434T0/1-720 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003003/1-1309 TSTPSEDQEA PGKKPKAPAM RFLKRTLSNE SEDSVKSATM PTDYPKTPTG 551 600 BACU013626/1-634 SPATEVSAKW THLTEFELKG LKALVEKLES LPENKKCVPE GIEDPQALLE ENSTTRP00000013558/1-1332 SPATEVSAKW THLTEFELKG LKALVEKLES LPENKKCVPE GIEDPQALLE ENSP00000366271/1-1336 SPATEVSAKW THLTEFELKG LKALVEKLES LPENKKCVPE GIEDPQALLE bmy_01434T0/1-720 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003003/1-1309 SPATEVSAKW THLTEFELKG LKALVEKLES LPENKKCVPE GIEDPQALLE 601 650 BACU013626/1-634 GVK------- ---------- ---------- -----VGRGS PRAG------ ENSTTRP00000013558/1-1332 GVKNVLKEHA DDDPSLAITG VPVVTWPKKT PKNRAVGRPK GKLGPASAVK ENSP00000366271/1-1336 GVKNVLKEHA DDDPSLAITG VPVVTWPKKT PKNRAVGRPK GKLGPASAVK bmy_01434T0/1-720 ---------- ---------- ---------- --NRAVGRPK GKLGPASAVK ENSBTAP00000003003/1-1309 GVKNVLKEHA EDDPSLAITG VPVVTWPKKT PKNRAVGRPK GKLGPASAVK 651 700 BACU013626/1-634 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013558/1-1332 LAANRTTA-A RRRRTRCRKC EACLRTECGE CHFCXXXXXX XXXXXXXXXX ENSP00000366271/1-1336 LAANRTTAGA RRRRTRCRKC EACLRTECGE CHFCKDMKKF GGPGRMKQSC bmy_01434T0/1-720 LAANRTTAGA RRRRTRCRKC EACLRTECGE CHFCKDMKKF GGPGRMKQSC ENSBTAP00000003003/1-1309 LAANRTTAGA RRRRTRCRKC EACLRTECGE CHFCKDMKKF GGPGRMKQSC 701 750 BACU013626/1-634 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013558/1-1332 XXXXXXXPVL PHTAVCLVCG EAGKEDTVEE EEGKFNLMLM ECSICNEIIH ENSP00000366271/1-1336 IMRQCIAPVL PHTAVCLVCG EAGKEDTVEE EEGKFNLMLM ECSICNEIIH bmy_01434T0/1-720 IMRQCIAPVL PHTAVCLVCG EAGKEDTVEE EEGKFNLMLM ECSICNEIIH ENSBTAP00000003003/1-1309 IMRQCIAPVL PHTAVCLVCG EAGKEDTVEE EEGKFNLMLM ECSICNEIIH 751 800 BACU013626/1-634 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013558/1-1332 PGCLKIKESE GVVNDELPNC WECPKCNHAG KTGKQKRGPG FKYASNLPGS ENSP00000366271/1-1336 PGCLKIKESE GVVNDELPNC WECPKCNHAG KTGKQKRGPG FKYASNLPGS bmy_01434T0/1-720 PGCLKIKESE GVVNDELPNC WECPKCNHAG KTGKQKRGPG FKYASNLPGS ENSBTAP00000003003/1-1309 PGCLKIKESE GVVNDELPNC WECPKCNHAG KTGKQKRGPG FKYASNLPGS 801 850 BACU013626/1-634 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013558/1-1332 LLKEQKMNRD SKEGQEPAKR RSECEEAPRR RPDEHPKKVP PDGILRRKSD ENSP00000366271/1-1336 LLKEQKMNRD NKEGQEPAKR RSECEEAPRR RSDEHSKKVP PDGLLRRKSD bmy_01434T0/1-720 LLKEQKMNRD SKEGQEPARR RGECEEAPRR RSDEHPKKLP PDGILRRKSD ENSBTAP00000003003/1-1309 LLKEQKMNRD NKEGQEPAKR RSECEEAPRR RSDEHPKKVP PDGILRRKSD 851 900 BACU013626/1-634 --QLRRVRQV ---------- ---------- ---------- ---------- ENSTTRP00000013558/1-1332 DVHLRRKRKY EKPQELSGRK RASTLQTSPG SSSHLSPRPP LGSSLSPWWR ENSP00000366271/1-1336 DVHLRKKRKY EKPQELSGRK RASSLQTSPG SSSHLSPRPP LGSSLSPWWR bmy_01434T0/1-720 DVHLRRKRKY EKPQELSGRK R--------- ---------- ---------- ENSBTAP00000003003/1-1309 DVHLRRKRKY EKPQELSGRK RASTLQTSPG SSSHLSPRPP LGSSLSPWWR 901 950 BACU013626/1-634 ---------- -------LFN KQV------- ---------- ---------- ENSTTRP00000013558/1-1332 SSLTYFQQQL KPGKEDKLFR KKRRSWKNAE DRMALANKPL RRFKQEPEDD ENSP00000366271/1-1336 SSLTYFQQQL KPGKEDKLFR KKRRSWKNAE DRMALANKPL RRFKQEPEDE bmy_01434T0/1-720 ---------L KPGKEDKLFR KKRRSWKNAE DRMALANKPL RRFKQEPEDD ENSBTAP00000003003/1-1309 SSLTYFQQQL KPGKEDKLFR KKRRSWKNAE DRITLANKPL RRFKQEPEDD 951 1000 BACU013626/1-634 -PE------- ---------- -GSSAPG--- ---------- ---------- ENSTTRP00000013558/1-1332 LPEAPPKTRE SDHSRSSSPT AGPSTEGAEG PEEKRKVKMR RKRRLPNKEL ENSP00000366271/1-1336 LPEAPPKTRE SDHSRSSSPT AGPSTEGAEG PEEKKKVKMR RKRRLPNKEL bmy_01434T0/1-720 LPEAPPKTRE SDHSRSSSPT AGPSTEGAEG PEEKRKVKMR RKRRLPNKEL ENSBTAP00000003003/1-1309 LPEAPPKTRE SDHSRSSSPT AGPSTEGAEG PEEKKKVKMR RKRRLPNKEL 1001 1050 BACU013626/1-634 ---------- ---------- ---------- ---------- --GL------ ENSTTRP00000013558/1-1332 SKELSKELNQ EIQKTESSLA HENHQPIKSE PESENEEPKR PLGLCERPHR ENSP00000366271/1-1336 SRELSKELNH EIQRTENSLA NENQQPIKSE PESEGEEPKR PPGICERPHR bmy_01434T0/1-720 SKELSKELNQ EIQKTESSLA HENHQPIKSE PESENEEPKR PLGLCERPHR ENSBTAP00000003003/1-1309 SKELSKELNQ EIQKTESSLA QENHQPIKSE PESENEEPKR PLGLCERPHR 1051 1100 BACU013626/1-634 ---------- -VQTVLG--- ---------- ---------- ------VRP- ENSTTRP00000013558/1-1332 FSKGPNGTPR ELRHQLGPSL RSPPRVISRP PPSVSPPKCI QMERHVIRPP ENSP00000366271/1-1336 FSKGLNGTPR ELRHQLGPSL RSPPRVISRP PPSVSPPKCI QMERHVIRPP bmy_01434T0/1-720 FSKGPNGTPR ELRHQLGPSL RSPPRVISRP PPSVSPPKCI QMERHVIRPP ENSBTAP00000003003/1-1309 FSKGLNGTPR ELRHQLGPGL RSPPRVISRP PPSVSPPKCI QMERHVIRPP 1101 1150 BACU013626/1-634 ---------- ---------- ---------- ---------- ---------C ENSTTRP00000013558/1-1332 PISPPPDSLP LDDGAAHVMH REVWMAVFSY LSQQDLCVCM RVCRTWNRWC ENSP00000366271/1-1336 PISPPPDSLP LDDGAAHVMH REVWMAVFSY LSHQDLCVCM RVCRTWNRWC bmy_01434T0/1-720 PISPPPDSLP LDDGAAHVMH REVWMAVFSY LSHQDLCVCM RVCRTWNRWC ENSBTAP00000003003/1-1309 PISPPPDSLP LDDGAAHVMH REVWMAVFSY LSHQDLCVCM RVCKTWNRWC 1151 1200 BACU013626/1-634 AERVLWSK-- ---------- ---------- ---------- -QAHLG---- ENSTTRP00000013558/1-1332 CDKRLWTRID LNHCKSITPL MLSGIIRRQP VSKDLSWTNI SKKQLSWLID ENSP00000366271/1-1336 CDKRLWTRID LNHCKSITPL MLSGIIRRQP VSLDLSWTNI SKKQLSWLIN bmy_01434T0/1-720 CDKRLWTRID LNHCKSITPL MLSGIIRRQP VSLDLSWTNI SKKQLSWLIN ENSBTAP00000003003/1-1309 CDKRLWTRID LNHCKSITPL MLSGIIRRQP VSLDLSWTNI SKKQLSWLIN 1201 1250 BACU013626/1-634 ---------- ---------- -----CP--- ---------- ---------- ENSTTRP00000013558/1-1332 RLPGLRDLVL SGCSWIAVSA LCSSSCPLLR TLDVQWVEGL KDAQMRDLLS ENSP00000366271/1-1336 RLPGLRDLVL SGCSWIAVSA LCSSSCPLLR TLDVQWVEGL KDAQMRDLLS bmy_01434T0/1-720 RLPGLRDLVL SGCSWIAVSA LCSSSCPLLR TLDVQWVEGL KDAQMRDLLS ENSBTAP00000003003/1-1309 RLPGLRDLVL SGCSWIAVSA LCSSSCPLLR TLDVQWVEGL KDAQMRDLLS 1251 1300 BACU013626/1-634 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013558/1-1332 PPTDNRPGQM DNRSKLRNIV ELRLAGLDIT DASLRLIIRH MPLLSKLHLS ENSP00000366271/1-1336 PPTDNRPGQM DNRSKLRNIV ELRLAGLDIT DASLRLIIRH MPLLSKLHLS bmy_01434T0/1-720 PPTDNRPGQM DNRSKLRNIV ELRLAGLDIT DASLRLIIRH MPLLSKLHLS ENSBTAP00000003003/1-1309 PPTDNRPGQM DNRSKLRNIV ELRLAGLDIT DASLRLIIRH MPLLSKLHLS 1301 1350 BACU013626/1-634 ---------- ---------- ---------- ---------- -----SGGHC ENSTTRP00000013558/1-1332 YCNHVTDQSI NLLTAVGTTT RDSLTEINLS XXXXXXXXXX XXXXXXXXXX ENSP00000366271/1-1336 YCNHVTDQSI NLLTAVGTTT RDSLTEINLS DCNKVTDQCL SFFKRCGNIC bmy_01434T0/1-720 YCNHVTDQSI NLLTAVGTTT RDSLTEINLS DCNKVTDQCL SFFKRCGNIC ENSBTAP00000003003/1-1309 YCNHVTDQSI NLLTAVGTTT RDSLTEINLS DCNKVTDQCL SFFKRCGNIC 1351 1400 BACU013626/1-634 ---------- ---------- ---------- ---------- ENSTTRP00000013558/1-1332 HIDLRYCKQV TKEGCEQFIA EMSVSVQFGQ VEEKLLQKLS ENSP00000366271/1-1336 HIDLRYCKQV TKEGCEQFIA EMSVSVQFGQ VEEKLLQKLS bmy_01434T0/1-720 HIDLRYCKQV TKEGCEQFIA EMSVSVQFGQ VEEKLLQKLS ENSBTAP00000003003/1-1309 HIDLRYCKQV TKEGCEQFIA EMSVSVQFGQ VEEKLLQKLS