KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:46 2014 Check: 00 .. Name: ENSTTRP00000000809/1-1007 Len: 1016 Check: 7111 Weight: 1.00 Name: ENSBTAP00000003007/1-941 Len: 1016 Check: 9951 Weight: 1.00 Name: ENSP00000281419/1-1006 Len: 1016 Check: 1843 Weight: 1.00 Name: bmy_17692T0/1-864 Len: 1016 Check: 7200 Weight: 1.00 Name: BACU016794/1-915 Len: 1016 Check: 7952 Weight: 1.00 // 1 50 ENSTTRP00000000809/1-1007 -MPDQISVSE FVAETHEDYK APTASSFTTR TAQCRNTVAA IEDALDVDRM ENSBTAP00000003007/1-941 ---------- ---------- ---------- ---------- ---------- ENSP00000281419/1-1006 -MPDQISVSE FVAETHEDYK APTASSFTTR TAQCRNTVAA IEEALDVDRM bmy_17692T0/1-864 MNENSLMVSL IPFIGCDGIY LNDLYSSKIP FKSTLFKKPS TDRALDVDRM BACU016794/1-915 ---------- ---------- ---------- ---------- ---------M 51 100 ENSTTRP00000000809/1-1007 VLYKMKKSVK AINISGLXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000003007/1-941 ---------- -------AHV ENEEQYTQAL EKFGGNCVCR DDPDLGSAFL ENSP00000281419/1-1006 VLYKMKKSVK AINSSGLAHV ENEEQYTQAL EKFGGNCVCR DDPDLGSAFL bmy_17692T0/1-864 VLYKMKKSVK AINISGLAHV ENEEQYTQAL EKFGGNCVCR DDPDLGSAFL BACU016794/1-915 VLYKMKKSVK AINISGLAHV ENEEQYTQAL EKFGGNCVCR DDPDLGSAFL 101 150 ENSTTRP00000000809/1-1007 XXXXXXXXXX XXXXXXIQNM NNIISFPLDS LLKGDLKGVK GDLKKPFDKA ENSBTAP00000003007/1-941 KFSVFTKELT ALFKNLIQNM NNIISFPLDS LLKGDLKGVK GDLKKPFDKA ENSP00000281419/1-1006 KFSVFTKELT ALFKNLIQNM NNIISFPLDS LLKGDLKGVK GDLKKPFDKA bmy_17692T0/1-864 KFSVFTKELT ALFKNLIQNM NNIISFPLDS LLKGDLKGVK GDLKKPFDKA BACU016794/1-915 KFSVFTKELT ALFKNLIQNM NNIISFPLDS LLKGDLKGVK GDLKKPFDKA 151 200 ENSTTRP00000000809/1-1007 WKDYETKITK IEKEKKEHAK LHGMIRTEIS GAEIAEEMEK ERRFFQLQMC ENSBTAP00000003007/1-941 WKDYETKITK IEKEKKEHAK LHGMIRTEIS GAEIAEEMEK ERRYFQLQMC ENSP00000281419/1-1006 WKDYETKITK IEKEKKEHAK LHGMIRTEIS GAEIAEEMEK ERRFFQLQMC bmy_17692T0/1-864 WKDYETKITK IEKEKKEHAR LHGMIRTEIS GAEIAEEMEK ERRLFQLQMC BACU016794/1-915 WKDYETKITK IEKEKKEHAK LHGMIRTEIS GAEIAEEMEK ERRFFQLQMC 201 250 ENSTTRP00000000809/1-1007 EYLLKVNEIK IKKGVDLLQN LIKYFHAQCN FFQDGLKAVE SLKPSIETLS ENSBTAP00000003007/1-941 EYLLKVNEIK IKKGVDLLQN LIKYFHAQCN FFQDGLKAVE SLKPSIETLS ENSP00000281419/1-1006 EYLLKVNEIK IKKGVDLLQN LIKYFHAQCN FFQDGLKAVE SLKPSIETLS bmy_17692T0/1-864 EYLLKVNEIK IKKGVDLLQN LIKYFHAQCN FFQDGLKAVE SLKPSIETLS BACU016794/1-915 EYLLKVNEIK IKKGVDLLQN LIKYFHAQCN FFQDGLKAVE SLKPSIETLS 251 300 ENSTTRP00000000809/1-1007 TDLHTIKQAQ DEERRQLIQL RDILKSALQV EQKEDS---- QLRQSTAYSL ENSBTAP00000003007/1-941 TDLHTIKQAQ DEERRQLIQL RDILKSALQV EQKEEATQDL QMRQSTAYSL ENSP00000281419/1-1006 TDLHTIKQAQ DEERRQLIQL RDILKSALQV EQKEDS---- QIRQSTAYSL bmy_17692T0/1-864 TDLHTIKQAQ DEERRQLIQL RDILKSALQV EQKEDS---- QLRQSTAYSL BACU016794/1-915 TDLHTIKQAQ DEERRQLIQL RDILKSALQV EQKEDS---- QLRQSTAYSL 301 350 ENSTTRP00000000809/1-1007 HQPQGNKEHG TERNGNLYKK SDGIRKVWQK RKCSVKNGFL TISHG--TAN ENSBTAP00000003007/1-941 HQPQGNKEHG TERTGSLYKK SDGLDQVNGN LKNRIHHPVL CVSHGALTAN ENSP00000281419/1-1006 HQPQGNKEHG TERNGSLYKK SDGIRKVWQK RKCSVKNGFL TISHG--TAN bmy_17692T0/1-864 HQPQGNKEHG TERNGNLYKK SDGL---LSS NQAAVHTA-- -------RAN BACU016794/1-915 HQPQGNKEHG TERNGNLYKK SDGIRKVWQK RKCSVKNGFL TISHG--TAN 351 400 ENSTTRP00000000809/1-1007 RPPAKLNLLT CQVKTNPEEK KCFDLISHDR TYHFQAEDEP ECQIWMSVLQ ENSBTAP00000003007/1-941 RPPAKLNLLT CQVKTNPEEK KCFDLISHDR TYHFQAEDEP ECQIWMSVLQ ENSP00000281419/1-1006 RPPAKLNLLT CQVKTNPEEK KCFDLISHDR TYHFQAEDEQ ECQIWMSVLQ bmy_17692T0/1-864 RPPAKLNLLT CQVKTNPEEK KCFDLISH-- ---------- ---------- BACU016794/1-915 RPPAKLNLLT CQVKTNPEEK KCFDLISHDR TYHFQAEDEQ ECQIWMSVLQ 401 450 ENSTTRP00000000809/1-1007 NSKEEALNNA FKGDDNTGEN NIVQELTKEI ISEVQRMTGN DVCCDCGAPD ENSBTAP00000003007/1-941 NSKEEALNNA FKGDDNTGEN NIVQELTKEI ISEVQGMTGN DVCCDCGAPD ENSP00000281419/1-1006 NSKEEALNNA FKGDDNTGEN NIVQELTKEI ISEVQRMTGN DVCCDCGAPD bmy_17692T0/1-864 ---------- ---------- ---------- ---------- ---------- BACU016794/1-915 NSKEEALNNA FKGDDNTGEN NIVQELTKEI ISEVQRMTGN DVCCDCGAPD 451 500 ENSTTRP00000000809/1-1007 PTWLSTNLGI LTCIECSGIH RELGVHYSRM QSLTLDVLGT SELLLAKNIG ENSBTAP00000003007/1-941 PTWLSTNLGI LTCIECSGIH RELGVHYSRM QSLTLDVLGT SELLLAKNIG ENSP00000281419/1-1006 PTWLSTNLGI LTCIECSGIH RELGVHYSRM QSLTLDVLGT SELLLAKNIG bmy_17692T0/1-864 PTWLSTNLGI LTCIECSGIH RELGVHYSRM QSLTLDVLGT SELLRPLII- BACU016794/1-915 PTWLSTNLGI LTCIECSGIH RELGVHYSRM QSLTLDVLGT SELLLAKNIG 501 550 ENSTTRP00000000809/1-1007 NAGFNEIMEC CLPAEDSIKP NPSSDM-NAR KDYITAKYIE RKYARKRHAD ENSBTAP00000003007/1-941 NAGFNEIMEC CLPAEDSVKP NPGSDM-NAR KDYITAKYIE RKYARKKHAD ENSP00000281419/1-1006 NAGFNEIMEC CLPAEDSVKP NPGSDM-NAR KDYITAKYIE RRYARKKHAD bmy_17692T0/1-864 ---YEAIM-- ---------- ---FDFRNAR KDYITAKYIE RKYARKRHAD BACU016794/1-915 NAGFNEVMEC CLPAEDSIKP NPSSDM-NAR KDYITAKYIE RKYARKRHAD 551 600 ENSTTRP00000000809/1-1007 NAAKLHSLCE AVKARDIYGL LQAYADGVDL TEXXXXXXXX EPDETALHLA ENSBTAP00000003007/1-941 NAAKLHSLCE AVKTRDIFGL LQAYADGVDL TEKIPLANGH EPDETALHLA ENSP00000281419/1-1006 NAAKLHSLCE AVKTRDIFGL LQAYADGVDL TEKIPLANGH EPDETALHLA bmy_17692T0/1-864 NVAKLHSLCE AVKTRDIFGL LQAYADGVDL TEKIPLANGH EPDETALHLA BACU016794/1-915 NAAKLHSLCE AVKTRDIFGL LQAYADGVDL TEKIPLANGH ELDETALHLA 601 650 ENSTTRP00000000809/1-1007 VRSVDRTSLH IVDFLVQNSG NLDKQTGKGS TALHYCCLTD SAECLKLLLR ENSBTAP00000003007/1-941 VRSVDRTSLH IVDFLVQNSG NLDKQTGKGS TALHYCCLTD SAECLKLLLR ENSP00000281419/1-1006 VRSVDRTSLH IVDFLVQNSG NLDKQTGKGS TALHYCCLTD NAECLKLLLR bmy_17692T0/1-864 VRSVDRTSLH IVDFLVQNSG NLDKQTGKGS TALHYCCLTD SAECLKLLLR BACU016794/1-915 VRSVDRTSLH IVDFLVQNSG NLDKQTGKGS TALHYCCLTD SAECLKLLLR 651 700 ENSTTRP00000000809/1-1007 GKASIGIANE SGETPLDIAK RLRHERCEEL LTQALSGRFN SHVHVEYEWR ENSBTAP00000003007/1-941 GKASIGIANE SGETPLDIAK RLRHERCEEL LNQALSGRFN SHVHVEYEWR ENSP00000281419/1-1006 GKASIEIANE SGETPLDIAK RLKHEHCEEL LTQALSGRFN SHVHVEYEWR bmy_17692T0/1-864 GKASIGIANE SGETPLDIAK RLRHERCEEL LTQALSGRFN SHVHVEYEWR BACU016794/1-915 GKASIGIANE SGETPLDIAK RLRHERCEEL LTQALSGRFN SHVHVEYEWR 701 750 ENSTTRP00000000809/1-1007 LLHEDLDESD DDVDEKLQPS PSRREDRPVS FYQLGSSQLQ SNAASLARDA ENSBTAP00000003007/1-941 LLPEDLDESD DDMDEKLQPS PSRREDRPVS FYQLGPSQLP SSAAALARDA ENSP00000281419/1-1006 LLHEDLDESD DDMDEKLQPS PNRREDRPIS FYQLGSNQLQ SNAVSLARDA bmy_17692T0/1-864 LLHEDLDESD DDVDEKLQPS PSRREDRPVS FYQLGSSQLQ SNAASLARDA BACU016794/1-915 LLHEDLDESD DDVDEKLQPS PSRREDRPVS FYQLGSGQLQ PNAASLARDA 751 800 ENSTTRP00000000809/1-1007 ASLAKDKQRS FVPSILQNET YGAILSSSPP PAQPAAPSAA SAPPLPPRNV ENSBTAP00000003007/1-941 GSLAKDKQRG FVPSLLQNET YGAILSGSPP PTQPAAPGSS SAPPLPPRNV ENSP00000281419/1-1006 ANLAKEKQRA FMPSILQNET YGALLSGSPP PAQPAAPSTT SAPPLPPRNV bmy_17692T0/1-864 ASLAKDKQRG FVPSILQNET YGAILSGSPP PTQPAAPSTA SAPPLPPRNV BACU016794/1-915 ASLAKDKQRG FVPSILQNET YGAILSGSPP PTQPAAPSTV SAPPLPPRNV 801 850 ENSTTRP00000000809/1-1007 AKVQPASSAN ALWKTNSVSV DSVSRQRSSS DPPAVHPPLP PLRVTSTNPL ENSBTAP00000003007/1-941 AKAQPASSAN APWKTNSVSV DSISRQRSSS DPPAVHPPLP PLRVTSTNPL ENSP00000281419/1-1006 GKVQTASSAN TLWKTNSVSV DGGSRQRSSS DPPAVHPPLP PLRVTSTNPL bmy_17692T0/1-864 AK-------- ---------- ---------- ---------- -------DPL BACU016794/1-915 AK-------- ---------- ---------- ---------- -------DPL 851 900 ENSTTRP00000000809/1-1007 APTPPPPVAK TPSVLEALSQ QSKPAQPGLP PSKAPPPLPP QLPSRLPQKR ENSBTAP00000003007/1-941 APTPPPPVAK TPSVIEALSQ QSKPAQSGLP PSKAPPPLPP QPPSRLPQKR ENSP00000281419/1-1006 TPTPPPPVAK TPSVMEALSQ PSKPAPPGIS QIR-PPPLPP QPPSRLPQKK bmy_17692T0/1-864 APTPPPPVAK TPSVLEALSQ QSKPAQPGLP PGKAPPPLPP QLPSRLPQKR BACU016794/1-915 APTPPPPVAK TPSVLEALSQ QSKPAQPGLL PGKAPPPLPP QLPSRLPQRR 901 950 ENSTTRP00000000809/1-1007 PAPGPDKSSP LINKGQPRGP -VDLSGTETL GPLSNAVVTQ PPAPMPRKSQ ENSBTAP00000003007/1-941 PAPGPDKSSP LINKGQPRGP -------EAL GPLSNAVVMQ PPAPMPRKSQ ENSP00000281419/1-1006 PAPGADKSTP LTNKGQPRGP -VDLSATEAL GPLSNAMVLQ PPAPMPRKSQ bmy_17692T0/1-864 PAPGPDKSSP LINKGQPRGP AVDLSGTEAV GSLSNAVVTQ PPAPMPRKSQ BACU016794/1-915 PAPGPDKSSP LINKGQPRGP AVDLSGTEAV GPLSNAVVTQ PPAPMPRKSQ 951 1000 ENSTTRP00000000809/1-1007 VTRLKPKRVK ALYNCVADNP DELTFSEGDV IVVDGEEDQE WWIGHIDGDP ENSBTAP00000003007/1-941 TTKLKPKRVK ALYNCVADNP DELTFSEGDV IIVDGEEDQE WWIGHIDGDP ENSP00000281419/1-1006 ATKLKPKRVK ALYNCVADNP DELTFSEGDV IIVDGEEDQE WWIGHIDGDP bmy_17692T0/1-864 ATKLKPKRVK ALYNCVADNP DELTFSEGDV IIVDGEEDQE WWIGHIDGDP BACU016794/1-915 ATKLKPKRVK ALYNCVADNP DELTFSEGDV IIVDGEEDQE WWIGHIDGDP 1001 1050 ENSTTRP00000000809/1-1007 SRKGAFPVSF VHFIAD ENSBTAP00000003007/1-941 SRKGAFPVSF VHFIAD ENSP00000281419/1-1006 GRKGAFPVSF VHFIAD bmy_17692T0/1-864 SRKGAFPVSF VHFIAD BACU016794/1-915 SRKGAFPVSF VHFIAD