KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:51 2014 Check: 00 .. Name: ENSTTRP00000014690/1-369 Len: 635 Check: 5211 Weight: 1.00 Name: ENSP00000297679/1-369 Len: 635 Check: 8868 Weight: 1.00 Name: ENSBTAP00000003028/1-368 Len: 635 Check: 6224 Weight: 1.00 Name: bmy_00732T0/1-635 Len: 635 Check: 5434 Weight: 1.00 Name: BACU011949/1-411 Len: 635 Check: 8666 Weight: 1.00 // 1 50 ENSTTRP00000014690/1-369 MANSAQAQKL VYLVTGGCGF LGXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000297679/1-369 MADSAQAQKL VYLVTGGCGF LGEHVVRMLL QREPRLGELR VFDQHLGPWL ENSBTAP00000003028/1-368 MADSAETQEL VYLVTGGCGF LGEHVVRMLL QREPRLRELR IFDLHLGPWL bmy_00732T0/1-635 MADSAQAQKL VYLVTGGCGF LGEHVVRMLL QQEPQLRELR IFDLHLGPWL BACU011949/1-411 MADSAQAQKL VYLVTGGCGF LGEHVVRMLL QQEPQLRELR IFDLHLGPWL 51 100 ENSTTRP00000014690/1-369 XXXXX----- ---------- ---------- ---------- -------XPV ENSP00000297679/1-369 EELKT----- ---------- ---------- ---------- -------GPV ENSBTAP00000003028/1-368 EELKT----- ---------- ---------- ---------- -------GPV bmy_00732T0/1-635 EELKTVRMDR MNESHWENVA PKGVGRTQQL ADSLSSDIAS GCPYPLPGPV BACU011949/1-411 EELKTVRMDR MNESHWENVA PKGVGRTQQL ADSLSSDIAS GCPYPLPGPV 101 150 ENSTTRP00000014690/1-369 QVTAIQGDVT QAHEVAAAVA GAHVVIHTAG LVDVFGKTSP ETIHEVNVQ- ENSP00000297679/1-369 RVTAIQGDVT QAHEVAAAVA GAHVVIHTAG LVDVFGRASP KTIHEVNVQ- ENSBTAP00000003028/1-368 QVTAIQGDVT QAHEVAAAVA GAHVVIHTAG LVDVFGKTSP ETIHEVNVQ- bmy_00732T0/1-635 QVTAIQGDVT QAHEVAAAVA GAHVVIHTAG LVDVFGKTSP ETIHEVNVQG BACU011949/1-411 QVTAIQGDVT QAHEVAAAVA GAHVVIHTAG LVDVFGKTSP ETIHEVNVQ- 151 200 ENSTTRP00000014690/1-369 ---------- ---------- ---------- ---------- ------GTRN ENSP00000297679/1-369 ---------- ---------- ---------- ---------- ------GTRN ENSBTAP00000003028/1-368 ---------- ---------- ---------- ---------- ------GTQN bmy_00732T0/1-635 QPSLTCCGSP WAWGKKARVL IQLWDGEGKD AEGEEASAWI HPRLPPGTWN BACU011949/1-411 ---------- ---------- ---------- ---------- ------GTRN 201 250 ENSTTRP00000014690/1-369 VIEACVQTGT RFLVYTSSME VVGPNIKGQP FYRGNENTPY EAVHRHPYPC ENSP00000297679/1-369 VIEACVQTGT RFLVYTSSME VVGPNTKGHP FYRGNEDTPY EAVHRHPYPC ENSBTAP00000003028/1-368 VIEACVQTGT RFLIYTSSME VVGPNIKGQP FYRGNENTPY EAVHRHPYPC bmy_00732T0/1-635 VIEACVQTGT RFLVYTSSME VVGPNIKGQP FYRGNENTPY EAVHRHPYPC BACU011949/1-411 VIEACVQTGT RFLVYTSSME VVGPNIKGQP FYRGNENTPY EAVHRHPYPC 251 300 ENSTTRP00000014690/1-369 SKALAEQLVL EANGRKVLGG LPLVTCALRP TGIYGEGHQI MRDFYHQGLR ENSP00000297679/1-369 SKALAEWLVL EANGRKVRGG LPLVTCALRP TGIYGEGHQI MRDFYRQGLR ENSBTAP00000003028/1-368 SKALAEQLVL EANGREVLGG LPLVTCALRP TGIYGEGHQI MRDFYHQGLR bmy_00732T0/1-635 SKALAEQLVL EANGRKVLGG LPLVTCALRP TGIYGEGHQI MRDFYHQGLR BACU011949/1-411 SKALAEQLVL EANGRKVLGG LPLVTCALRP TGIYGEGHQI MRDFYHQGLR 301 350 ENSTTRP00000014690/1-369 LGGRLFRAIP ASVEHGRVYV ---------- ---------- ---------- ENSP00000297679/1-369 LGGWLFRAIP ASVEHGRVYV ---------- ---------- ---------- ENSBTAP00000003028/1-368 LGGRLFRAIP ASVEHGRVYV ---------- ---------- ---------- bmy_00732T0/1-635 LGGRLFRAIP ASVEHGRVYV GEAGARRWGR LKKQGRTHRF WGEGLFCTLA BACU011949/1-411 LGGRLFRAIP ASVEHGRVYV ---------- ---------- ---------- 351 400 ENSTTRP00000014690/1-369 ---------- ---------- ---------- ---------- ---------- ENSP00000297679/1-369 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003028/1-368 ---------- ---------- ---------- ---------- ---------- bmy_00732T0/1-635 KKGWSVHGPE QTLICGPCLQ GPQRKQCPCQ LGRLRSIPCH RLRKGLQFCE BACU011949/1-411 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000014690/1-369 ---------- ---------- ---------- ---------- ---------- ENSP00000297679/1-369 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003028/1-368 ---------- ---------- ---------- ---------- ---------- bmy_00732T0/1-635 QHLPRRGEGE HLPRTNRRRN SIHIGWPGRV NGYRGLGESS LQQGRSYVGS BACU011949/1-411 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000014690/1-369 ---------- ---------- ---------- ---------- -------XXX ENSP00000297679/1-369 ---------- ---------- ---------- ---------- -------GNV ENSBTAP00000003028/1-368 ---------- ---------- ---------- ---------- -------GNV bmy_00732T0/1-635 IYMGPRTGCL VHALAQKRAV STWLQGHSRT YPPPVLSSAP PLPPVPTGNV BACU011949/1-411 ---------- ---------- ---------- ---------- -------GNV 501 550 ENSTTRP00000014690/1-369 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000297679/1-369 AWMHVLAARE LEQRATLMGG QVYFCYDGSP YRSYEDFNME FLGPCGLRLV ENSBTAP00000003028/1-368 AWMHVLVARE LEHRAALMGG QVYFCYDNSP YKSYEDFNME FLGPCGLRLV bmy_00732T0/1-635 AWMHVLVARE LEHRAALMGG QVYFCYDNSP YKSYEDFNME FLGPCGLRLV BACU011949/1-411 AWMHVLVARE LEHRAALMGG QVYFCYDNSP YKSYEDFNME FLGPCGLRLV 551 600 ENSTTRP00000014690/1-369 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXVS ENSP00000297679/1-369 GARPLLPYWL LVFLAALNAL LQWLLRPLVL YAPLLNPYTL AVANTTFTVS ENSBTAP00000003028/1-368 GTRPLMPYWL LVLLAALNTL LQWLLRPLML YAPLLNPYTL AVANTTFTVS bmy_00732T0/1-635 GTRPLLPYWL LVFLAALNVL LQWLLRPLLL YAPLLNPYTL AMANTTFTVS BACU011949/1-411 GTRPLLPYWL LVFLAALNVL LQWLLRPLLL YAPLLNPYTL AMANTTFTVS 601 650 ENSTTRP00000014690/1-369 TDKARRHFGY EPLFSWEESR TRTIRWVQAV EGSAQ ENSP00000297679/1-369 TDKAQRHFGY EPLFSWEDSR TRTILWVQAA TGSAQ ENSBTAP00000003028/1-368 TDKARRHFGY EPLFSWEESR TRTIRWVQTV EGSA- bmy_00732T0/1-635 TDKARRHFGY EPPFSWEESR TRTIRWVQAM EGSAQ BACU011949/1-411 TDKARRHFGY EPPFSWEESR TRTIRWVQAM EGSAQ